genome.fa.s186.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000186.1 Hibiscus syriacus cultivar Beakdansim tig00000329_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3152351

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  2  of  17  ( 1977 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
208144--208216	32	2.3	32	87	0	110	36	10	16	35	1.84
211860--211906	21	2.2	22	80	7	60	36	27	12	23	1.91
211867--211918	21	2.5	21	90	0	86	28	28	19	23	1.98
212183--212259	38	2.1	37	87	2	109	35	11	24	28	1.91
212436--212495	21	2.9	21	94	0	111	18	15	31	35	1.91
215697--215725	10	2.9	10	100	0	58	62	0	0	37	0.96
215697--215734	20	1.9	20	84	10	51	65	2	0	31	1.06
217115--217160	3	15.3	3	95	0	83	63	0	2	34	1.07
217470--217919	111	4.0	112	84	9	555	28	19	13	38	1.89
217482--217927	223	2.0	220	85	7	607	28	19	13	38	1.90
218651--219352	83	8.5	83	95	2	1283	36	21	13	28	1.92
220482--220533	7	7.3	7	83	12	70	1	13	0	84	0.70
220482--220541	8	8.0	8	78	14	58	1	15	0	83	0.73
220482--220541	13	4.1	15	79	16	72	1	15	0	83	0.73
220482--220544	21	3.0	21	80	15	76	1	15	0	82	0.74
233189--233240	3	17.3	3	84	7	70	61	0	1	36	1.07
237190--237240	22	2.3	22	82	0	75	52	1	3	41	1.31
239556--239739	92	2.0	91	89	3	280	30	35	11	21	1.90
245593--245636	18	2.4	18	88	3	61	31	13	38	15	1.87
247586--247640	28	2.0	28	88	0	83	38	23	10	27	1.88
249656--249706	25	2.0	25	84	0	66	27	13	17	41	1.87
258717--258841	58	2.2	56	82	5	153	45	10	8	36	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
260297--260365	36	1.9	36	84	0	93	43	27	14	14	1.84
272049--272131	24	3.5	24	83	9	107	16	18	18	46	1.84
272063--272143	12	6.8	12	73	10	67	16	16	18	49	1.80
288883--288923	18	2.2	20	86	8	59	56	4	2	36	1.34
294077--294210	60	2.2	60	83	0	160	31	24	5	38	1.80
297788--297841	18	3.3	15	82	15	54	29	1	0	68	1.00
297810--297841	9	3.6	9	100	0	64	25	0	0	75	0.81
297826--297893	34	2.0	34	88	5	102	35	2	0	61	1.11
297813--297893	11	7.5	11	77	10	55	34	2	0	62	1.08
303974--304124	69	2.2	69	87	2	214	26	20	21	31	1.98
307629--307672	22	2.1	22	87	8	65	34	2	2	61	1.21
307614--307680	23	3.0	22	71	20	57	35	2	1	59	1.22
310217--310252	10	3.8	10	89	10	58	61	0	30	8	1.26
315945--316003	21	2.8	21	89	0	100	8	30	42	18	1.80
324044--324068	11	2.3	11	100	0	50	68	0	0	32	0.90
325299--325344	13	3.1	14	84	15	58	69	0	0	30	0.89
325301--325366	30	2.2	30	79	12	75	65	1	0	33	1.02
325300--325374	17	4.2	19	75	14	70	64	1	0	34	1.02
325362--325767	34	11.3	33	75	14	145	44	5	4	44	1.48
325375--325767	38	10.9	37	77	14	319	44	6	4	44	1.49
325396--325774	75	5.2	72	76	14	264	44	5	4	45	1.48
343424--344859	727	2.0	716	93	2	2463	24	22	16	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
350849--350901	21	2.5	22	87	3	72	32	13	16	37	1.88
350995--351052	21	2.8	21	100	0	116	29	24	17	29	1.97
350849--351177	167	2.0	167	89	0	505	31	19	14	34	1.92
355404--355455	22	2.4	22	80	0	59	44	17	11	26	1.83
355908--355959	21	2.5	21	90	3	79	46	30	0	23	1.53
365809--365871	32	2.0	32	83	0	81	42	19	11	26	1.84
366325--366371	21	2.2	21	88	0	76	19	25	17	38	1.92
366367--366551	20	9.3	20	96	1	327	38	20	19	21	1.93
366367--366551	99	1.9	100	94	1	327	38	20	19	21	1.93
366378--366557	59	3.0	59	91	4	290	38	19	20	21	1.93
366548--366591	20	2.2	20	100	0	88	31	25	20	22	1.98
367432--367485	24	2.2	24	86	0	72	22	20	18	38	1.93
369918--369986	20	3.4	21	90	7	108	34	26	21	17	1.95
369958--370053	33	2.9	34	85	3	131	42	20	22	13	1.87
369991--370057	20	3.7	19	72	22	72	46	19	20	13	1.83
370090--370143	14	3.5	14	73	22	54	11	24	20	44	1.83
370068--370163	33	2.9	34	88	3	140	12	22	20	43	1.86
371729--371773	21	2.3	18	81	11	54	24	11	42	22	1.86
372275--372362	20	4.4	20	91	0	104	37	23	17	21	1.94
372406--372584	20	9.6	20	75	16	143	19	18	20	40	1.91
372459--372561	34	3.1	34	73	8	102	15	18	20	45	1.85
372370--372584	40	5.9	39	70	17	142	19	19	20	41	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
374459--374548	20	4.6	20	85	1	101	45	23	16	14	1.84
374885--374950	22	3.0	22	81	0	78	25	13	36	24	1.92
375154--375279	20	6.3	20	87	3	191	20	20	20	38	1.94
375269--375321	21	2.5	21	93	0	88	35	16	24	22	1.95
375597--375676	35	2.3	35	91	4	126	42	22	0	35	1.54
375597--375692	35	2.7	35	87	3	122	40	26	1	32	1.63
375850--376138	147	2.0	148	95	0	517	38	6	9	46	1.62
376635--376714	35	2.3	35	89	4	117	32	1	22	43	1.61
379856--379951	45	2.1	45	98	0	183	43	18	15	21	1.87
385923--385965	20	2.2	20	84	8	54	46	9	20	23	1.79
386858--386896	17	2.2	19	86	9	55	64	7	0	28	1.21
390734--390790	26	2.2	27	90	6	91	71	3	3	21	1.15
392355--392602	122	2.0	122	96	0	460	40	21	12	26	1.88
400287--400341	20	2.7	21	82	5	67	36	23	14	25	1.93
402328--402484	82	1.9	82	89	0	242	28	36	12	23	1.91
402582--402629	23	2.1	23	88	0	69	35	4	27	33	1.76
402848--402890	19	2.2	20	80	12	54	20	2	9	67	1.30
403506--403549	4	11.0	4	85	0	61	50	18	0	31	1.47
403506--403549	8	5.5	8	91	0	70	50	18	0	31	1.47
410268--410647	186	2.0	186	84	4	500	36	4	9	48	1.56
410170--410847	196	3.5	192	79	8	686	37	4	8	49	1.56
410713--410979	142	1.9	142	85	5	369	39	5	7	47	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
414540--414578	18	2.2	17	90	4	60	56	5	5	33	1.43
417001--417099	36	2.7	37	87	1	137	41	16	20	22	1.90
417134--417203	21	3.6	20	65	31	53	40	12	21	25	1.89
417118--417381	36	7.5	36	76	10	258	41	12	19	27	1.87
417001--417226	121	1.9	121	85	1	319	42	14	20	23	1.88
417118--417277	73	2.2	71	85	6	214	41	13	20	25	1.88
417190--417379	101	1.9	103	83	2	249	42	11	18	27	1.85
417318--417377	19	3.3	19	65	25	56	45	6	20	28	1.76
418727--418986	95	2.7	95	84	4	310	32	16	16	33	1.92
431167--431205	16	2.5	15	87	8	51	20	2	2	74	1.06
432071--432119	16	3.1	16	93	0	80	24	24	6	44	1.76
432074--432127	16	3.4	16	80	14	58	24	22	7	46	1.77
436790--436831	16	2.6	16	80	0	57	21	26	9	42	1.83
436788--436842	25	2.2	25	78	15	62	23	21	9	45	1.80
438816--438856	20	2.0	20	90	4	64	39	14	4	41	1.67
441253--441316	29	2.2	29	85	0	92	31	9	6	53	1.58
443467--443511	22	2.0	23	82	4	56	33	15	11	40	1.83
447275--447351	38	2.0	38	97	0	145	35	5	20	38	1.75
457018--457079	29	2.1	29	87	0	88	30	16	20	32	1.95
470303--470367	21	3.2	20	77	14	64	24	15	23	36	1.93
473967--474018	21	2.4	21	80	6	59	40	1	1	55	1.22
474029--474061	17	2.0	17	88	5	50	63	0	0	36	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
487351--487404	19	2.8	20	77	11	58	31	3	1	62	1.23
487843--487876	3	11.7	3	93	6	61	67	0	32	0	0.91
488370--488415	17	2.9	16	81	15	51	52	8	2	36	1.45
496268--496306	15	2.6	16	84	12	55	61	7	12	17	1.54
504053--504198	25	5.9	25	79	10	149	43	1	15	39	1.56
511694--511772	17	4.4	18	72	12	56	24	2	36	36	1.69
514720--514771	19	2.8	19	81	16	65	59	1	3	34	1.27
514976--515027	26	2.0	26	100	0	104	34	15	19	30	1.93
515093--515391	129	2.3	127	75	7	289	27	17	29	26	1.97
515558--515730	91	1.9	91	91	2	285	23	20	15	41	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17