genome.fa.s186.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000186.1 Hibiscus syriacus cultivar Beakdansim tig00000329_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3152351

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  3  of  17  ( 1977 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
515651--516056	117	3.7	107	83	10	464	25	20	15	38	1.92
516492--516603	36	3.1	36	70	2	107	41	16	17	25	1.89
516455--516701	73	3.4	73	85	0	314	37	14	19	27	1.91
516687--516744	28	2.0	29	90	3	91	43	15	12	29	1.83
516716--516900	36	5.1	36	91	0	289	41	12	20	25	1.88
516891--517181	40	7.4	40	90	4	468	40	11	16	31	1.84
516891--517181	114	2.5	115	90	3	458	40	11	16	31	1.84
526779--526828	3	17.0	3	76	19	52	62	2	2	34	1.18
526781--526828	20	2.3	21	86	10	64	62	2	2	33	1.18
532275--532313	20	2.0	20	85	10	53	15	2	7	74	1.15
539455--539535	42	2.0	42	85	2	110	32	18	16	33	1.93
539348--540519	232	5.0	233	82	7	1340	34	15	16	33	1.91
540136--540187	20	2.6	20	96	0	95	21	15	28	34	1.94
539926--540420	253	2.0	252	87	2	724	32	16	17	33	1.93
541016--541067	20	2.6	20	87	0	77	38	30	21	9	1.85
545038--545096	25	2.4	25	97	2	111	30	10	0	59	1.30
549401--549455	24	2.3	24	96	0	101	20	27	10	41	1.85
550820--550855	16	2.2	16	100	0	72	36	11	5	47	1.63
551413--551490	39	2.0	39	92	0	129	30	8	17	42	1.81
555917--555949	16	2.1	16	88	11	50	42	33	0	24	1.55
564504--564623	35	3.3	36	82	8	147	44	18	4	33	1.69
564507--564644	72	2.0	69	84	7	179	43	18	5	32	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
564522--564645	35	3.5	35	81	4	133	43	16	6	33	1.74
567612--567643	15	2.1	15	94	0	55	6	25	15	53	1.65
568389--568421	16	2.0	17	94	5	59	36	21	6	36	1.78
568829--568947	34	3.3	36	81	9	145	45	18	4	31	1.69
573519--573633	41	2.8	41	88	5	153	26	14	22	36	1.93
574183--574334	65	2.4	63	90	3	243	30	17	13	38	1.88
574327--574550	41	5.4	40	69	17	136	30	21	15	32	1.94
574305--574551	82	3.0	81	80	8	266	31	21	14	32	1.93
592012--592070	31	1.9	31	86	6	84	57	5	1	35	1.31
602102--602175	31	2.4	31	86	0	103	31	31	24	13	1.93
602193--602299	31	3.3	31	70	19	92	37	19	21	21	1.95
602194--602322	66	2.0	65	87	1	186	35	20	22	20	1.96
603397--603459	21	3.0	21	95	0	117	34	28	22	14	1.93
604267--604324	20	2.7	20	86	10	71	22	22	22	32	1.98
606906--606971	23	2.7	23	84	13	71	30	16	24	28	1.97
610519--610593	36	2.1	36	94	0	132	30	10	32	26	1.90
612725--613600	443	2.0	443	98	0	1707	38	24	11	25	1.90
615431--615478	15	3.2	15	93	0	78	31	0	6	62	1.20
615687--615721	17	2.1	17	94	0	61	54	8	0	37	1.31
615702--615760	22	2.8	22	85	10	70	47	5	0	47	1.24
616466--616952	229	2.1	228	94	0	866	44	7	7	40	1.61
617074--617408	160	2.1	159	85	5	444	41	14	17	26	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
618503--618589	40	2.2	40	93	2	149	49	17	13	19	1.79
618998--619070	23	3.2	23	88	0	101	34	4	21	39	1.73
623271--623300	15	2.0	15	93	0	51	20	0	23	56	1.42
624123--624167	20	2.3	19	85	11	56	20	26	24	28	1.99
624374--624459	44	2.0	44	100	0	172	33	26	6	32	1.83
637697--637779	23	3.7	23	75	12	82	22	31	25	20	1.98
639084--639124	18	2.3	18	91	0	64	46	21	31	0	1.52
646811--646857	23	2.0	24	95	4	87	51	8	8	31	1.63
646943--646978	17	2.1	18	94	5	65	30	5	11	52	1.59
647775--647825	24	2.1	24	100	0	102	50	7	7	33	1.60
647913--647949	19	1.9	19	100	0	74	21	5	10	62	1.48
651636--651712	25	3.0	25	77	3	91	42	35	1	20	1.61
651636--651712	26	3.0	26	75	9	86	42	35	1	20	1.61
651636--651726	25	3.6	25	74	2	83	39	35	1	24	1.63
652272--652333	28	2.1	30	85	8	83	32	0	1	66	1.02
656518--656548	16	1.9	16	93	0	53	64	0	0	35	0.94
656817--656857	21	2.0	21	85	0	55	53	2	4	39	1.35
657938--657994	3	19.0	3	75	13	55	59	0	0	40	0.97
657927--657989	28	2.2	28	89	10	94	55	0	0	44	0.99
658125--658837	76	9.4	76	97	0	1347	35	22	19	22	1.96
659493--659547	22	2.5	22	84	0	74	36	14	12	36	1.84
661991--662217	115	2.0	114	91	0	364	31	20	14	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
664795--664824	2	15.0	2	100	0	60	50	0	0	50	1.00
667059--667098	21	1.9	21	84	0	53	60	7	15	17	1.57
670162--670192	16	1.9	16	93	0	53	64	0	0	35	0.94
670461--670501	21	2.0	21	85	0	55	53	2	4	39	1.35
671560--671623	11	6.0	11	76	10	53	57	0	0	42	0.98
671571--671627	3	19.0	3	79	13	64	61	0	0	38	0.96
671560--671623	28	2.3	27	89	10	94	57	0	0	42	0.98
679878--679922	21	2.1	21	91	0	72	46	0	4	48	1.22
680659--680750	32	2.9	32	85	0	121	33	15	11	39	1.84
690627--690715	28	3.1	27	72	20	74	44	1	1	52	1.15
690632--690707	15	5.3	15	71	25	74	46	1	1	51	1.17
692045--692107	24	2.5	24	94	5	108	36	7	22	33	1.83
693009--693304	148	2.0	147	94	3	524	44	16	8	30	1.76
698539--698579	3	13.7	3	85	10	57	70	0	0	29	0.87
698721--699210	134	3.7	134	90	0	712	24	16	32	26	1.96
699306--699390	44	1.9	44	90	4	136	38	15	15	30	1.88
699723--699782	31	2.0	30	83	9	77	41	11	13	33	1.80
699572--699884	131	2.4	133	83	5	386	42	13	16	27	1.85
699657--699883	63	3.5	64	78	14	250	44	13	14	28	1.82
700244--700548	104	2.9	104	83	6	355	42	10	14	32	1.80
700608--700681	35	2.1	36	87	7	107	35	8	18	37	1.81
700744--700884	35	3.9	36	77	10	135	34	13	17	34	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
702532--702610	17	4.6	18	78	18	87	0	16	8	74	1.05
702537--702623	25	3.5	24	73	7	66	1	17	6	74	1.09
703911--703945	14	2.5	14	100	0	70	57	14	14	14	1.66
704432--704491	31	1.9	31	90	6	95	60	10	16	13	1.59
704563--704643	32	2.5	32	95	0	144	30	30	14	23	1.95
714442--714482	21	2.0	21	85	9	57	39	19	0	41	1.52
721611--721652	22	2.0	21	90	4	66	59	0	19	21	1.38
724198--724247	3	16.7	3	80	15	59	66	0	30	4	1.10
731043--731085	23	2.0	23	86	9	63	25	44	4	25	1.73
732948--732986	19	2.0	20	95	5	71	41	15	15	28	1.87
735954--736020	33	2.0	33	97	0	125	47	0	8	43	1.34
736270--736317	25	2.0	24	83	4	60	50	0	10	39	1.37
751033--751060	10	2.8	10	100	0	56	32	28	0	39	1.57
755105--755139	16	2.1	17	94	5	63	51	5	20	22	1.68
763314--763362	16	3.0	16	82	8	55	55	0	2	42	1.11
764673--764731	21	2.8	21	89	5	84	49	27	5	18	1.68
768721--768933	41	5.3	41	81	6	208	34	17	19	28	1.94
768768--768926	81	2.0	80	83	6	205	33	17	20	28	1.95
769434--769720	75	3.9	74	82	2	317	40	12	13	33	1.82
769450--769720	147	1.8	147	82	1	346	42	12	12	31	1.81
769630--769841	98	2.2	98	86	1	300	41	13	11	33	1.80
769793--769864	23	3.1	23	87	0	99	36	16	13	33	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
772576--772717	39	3.7	38	84	3	187	21	21	9	47	1.79
772895--773576	122	5.7	123	84	7	713	26	19	14	39	1.90
772895--773589	246	3.0	232	80	10	747	26	19	14	39	1.90
773137--773596	113	4.0	113	84	7	547	26	19	15	38	1.91
773137--773589	225	2.0	228	83	9	582	26	19	15	38	1.91
773989--774109	22	5.5	22	93	0	206	38	14	14	33	1.87
776554--776773	114	1.9	114	87	0	323	28	19	15	35	1.93
778926--778984	22	2.7	22	82	7	59	3	13	1	81	0.90
778925--778992	7	9.4	7	78	12	66	2	14	1	80	0.89
781759--781799	6	6.7	6	83	5	55	53	4	14	26	1.61

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17