genome.fa.s186.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000186.1 Hibiscus syriacus cultivar Beakdansim tig00000329_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3152351

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  14  of  17  ( 1977 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2445812--2445981	84	2.0	84	87	2	243	28	12	32	25	1.93
2445883--2445950	21	3.2	21	62	22	52	27	14	33	23	1.94
2447343--2447400	14	4.1	14	97	0	107	46	29	13	10	1.77
2447367--2447434	35	2.0	34	88	2	100	51	22	10	16	1.74
2447381--2447420	21	2.0	20	85	5	53	55	22	7	15	1.65
2447480--2447537	20	2.9	20	86	0	89	15	15	22	46	1.83
2447467--2447582	34	3.2	35	84	10	130	17	12	20	49	1.79
2447924--2447978	22	2.5	22	90	0	92	23	20	43	12	1.86
2448111--2448233	60	2.0	60	87	0	174	38	13	20	27	1.90
2448087--2448233	20	7.3	20	70	10	77	35	12	20	31	1.90
2448158--2448272	40	2.8	40	84	7	135	35	14	20	28	1.93
2448179--2448254	20	3.8	19	73	20	66	39	13	22	25	1.90
2448118--2448254	60	2.3	60	84	0	166	39	13	21	26	1.89
2448291--2448335	20	2.2	20	84	11	56	26	17	24	31	1.97
2449636--2449714	28	2.8	28	94	0	131	22	25	20	31	1.98
2450455--2450557	26	3.9	26	75	13	102	41	1	0	56	1.10
2450620--2450732	31	3.6	31	80	8	122	55	0	5	38	1.29
2450719--2450781	25	2.5	25	73	21	60	53	1	4	39	1.31
2451116--2451171	28	2.0	28	89	0	85	33	14	19	32	1.92
2454089--2454123	13	2.6	14	86	4	54	71	8	2	17	1.23
2454550--2454593	2	22.0	2	100	0	88	50	0	0	50	1.00
2461813--2461864	26	2.0	26	100	0	104	46	23	3	26	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2464029--2464061	17	1.9	17	93	0	57	42	30	12	15	1.83
2467646--2467680	17	2.1	17	88	0	52	14	8	0	77	0.99
2477428--2477461	17	2.1	16	88	5	50	14	8	0	76	1.01
2484151--2484767	306	2.0	308	97	2	1177	29	24	22	22	1.99
2495876--2496037	63	2.5	64	81	4	168	33	21	19	25	1.97
2496703--2496746	23	1.9	23	90	0	70	18	25	25	31	1.97
2505052--2505079	14	2.0	14	100	0	56	42	21	14	21	1.88
2505686--2505927	31	8.0	31	87	4	320	41	19	18	20	1.91
2505698--2505927	30	7.7	30	86	6	315	41	19	18	20	1.90
2505698--2505927	59	3.8	61	86	6	319	41	19	18	20	1.90
2506470--2506528	19	3.3	19	69	26	65	22	27	37	13	1.91
2510057--2510395	31	11.0	31	92	2	551	38	22	19	20	1.94
2510082--2510383	152	2.0	153	94	0	534	37	21	20	20	1.94
2510057--2510395	183	1.8	184	92	1	583	38	22	19	20	1.94
2510950--2511018	35	2.0	35	100	0	138	20	28	31	18	1.96
2510949--2511012	20	3.5	20	64	27	59	21	28	34	15	1.94
2517146--2517193	2	24.0	2	100	0	96	50	0	0	50	1.00
2517212--2517243	15	2.1	15	94	0	55	28	6	3	62	1.34
2520244--2520347	46	2.2	46	93	1	172	42	5	11	40	1.65
2520429--2520472	21	2.2	20	84	12	54	52	13	6	27	1.66
2520836--2520883	23	2.1	23	88	0	69	35	12	18	33	1.89
2521359--2521431	23	3.2	23	88	0	101	38	20	4	36	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2521368--2521432	23	2.8	23	90	0	103	35	21	3	40	1.69
2520960--2521881	489	1.9	489	98	0	1776	40	10	7	40	1.69
2523509--2523557	20	2.5	20	83	9	64	16	14	10	59	1.61
2523295--2523767	181	2.6	181	85	1	608	27	16	13	42	1.85
2526698--2526728	6	5.2	6	100	0	62	35	0	64	0	0.94
2528040--2528100	32	1.9	32	90	6	97	32	8	13	45	1.72
2532566--2532638	25	2.8	26	70	15	62	46	6	2	43	1.44
2534632--2534694	33	1.9	33	81	12	76	33	22	11	33	1.89
2534670--2534742	27	2.7	26	83	6	83	24	24	17	32	1.97
2534683--2534750	27	2.5	27	80	0	82	20	27	17	33	1.95
2535000--2535048	24	2.0	24	96	0	89	30	10	28	30	1.90
2536256--2536304	22	2.3	22	82	3	55	6	14	10	69	1.35
2538530--2538691	65	2.5	64	79	9	168	32	19	24	23	1.97
2540162--2540214	23	2.3	23	93	0	88	13	26	28	32	1.93
2542960--2542984	11	2.3	11	100	0	50	52	8	0	40	1.31
2548913--2548997	23	3.7	23	90	1	127	23	31	22	22	1.98
2551216--2551250	18	2.1	17	89	10	54	34	0	42	22	1.54
2560673--2560749	31	2.5	31	91	0	118	46	6	11	35	1.66
2562839--2562879	20	2.0	21	85	4	57	58	2	2	36	1.24
2564279--2564310	11	2.8	11	95	4	55	43	0	0	56	0.99
2564306--2564376	3	23.7	3	94	0	124	63	0	1	35	1.03
2564571--2565274	114	6.1	117	91	3	965	30	20	12	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2566006--2566474	84	5.6	84	96	0	825	36	21	13	28	1.91
2566006--2566474	253	1.9	250	94	1	830	36	21	13	28	1.91
2567613--2567696	7	11.9	7	72	15	66	2	16	0	80	0.81
2567613--2567692	15	5.2	15	80	8	74	2	16	0	81	0.80
2567631--2567689	12	4.9	12	78	15	52	3	16	0	79	0.86
2579047--2579087	20	2.0	21	85	4	57	58	2	2	36	1.24
2579968--2580009	21	2.0	20	90	4	66	0	11	7	80	0.88
2579966--2580012	25	1.9	24	91	4	76	0	14	6	78	0.93
2580494--2580518	11	2.3	11	100	0	50	48	0	0	52	1.00
2580514--2580588	3	24.7	3	91	2	123	64	0	1	34	1.02
2580636--2580725	44	2.0	45	95	2	164	22	11	38	27	1.88
2582581--2582620	2	20.0	2	100	0	80	50	0	0	50	1.00
2582987--2583059	2	36.5	2	100	0	146	50	0	0	49	1.00
2583499--2583528	4	7.5	4	100	0	60	23	0	0	76	0.78
2587013--2587068	27	2.1	27	83	6	69	28	10	7	53	1.62
2587341--2587365	12	2.1	12	100	0	50	40	8	36	16	1.77
2587394--2587449	29	1.9	29	96	0	103	10	37	30	21	1.87
2593382--2593431	21	2.4	21	100	0	100	52	4	14	30	1.59
2599997--2600036	20	2.0	20	95	0	71	22	40	25	12	1.89
2604862--2604916	27	2.0	27	86	10	76	45	14	10	29	1.79
2607286--2607327	21	2.0	21	90	0	66	30	11	7	50	1.66
2607320--2607392	33	2.2	32	88	4	110	34	8	15	42	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2608852--2608898	15	3.1	15	87	0	58	21	51	2	25	1.59
2610204--2610245	2	21.0	2	100	0	84	50	0	0	50	1.00
2612164--2612225	3	21.0	3	86	3	81	30	0	3	66	1.08
2616333--2616382	7	7.0	7	82	8	57	14	20	10	56	1.66
2616333--2616382	15	3.5	14	79	12	57	14	20	10	56	1.66
2618954--2618982	11	2.6	11	100	0	58	89	0	10	0	0.48
2623536--2623652	55	2.1	54	90	4	182	40	17	20	22	1.92
2624015--2624069	22	2.5	22	90	0	92	34	12	14	38	1.84
2624745--2625647	76	11.9	76	97	0	1689	22	19	21	36	1.95
2625807--2625868	3	21.0	3	86	3	81	30	0	3	66	1.08
2631720--2631767	22	2.2	23	82	14	57	39	4	0	56	1.19
2633114--2633142	2	14.5	2	100	0	58	51	0	0	48	1.00
2644237--2644327	24	3.8	24	83	2	103	27	17	17	37	1.92
2644405--2644479	35	2.1	35	95	0	132	9	28	28	34	1.88
2646462--2646521	31	1.9	31	89	0	93	16	46	21	15	1.83
2646484--2646532	18	2.7	18	100	0	98	16	48	22	12	1.79
2649022--2649112	24	3.8	24	83	2	112	26	17	18	37	1.93
2649190--2649264	35	2.1	35	97	0	141	9	29	28	33	1.88
2653522--2653568	18	2.6	18	89	0	76	44	6	23	25	1.77
2654977--2655034	29	1.9	31	82	6	75	41	5	12	41	1.64
2658727--2658773	21	2.2	20	79	17	51	27	0	14	57	1.38
2663926--2664425	45	11.2	45	84	3	607	41	11	21	25	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2663946--2664380	220	2.0	220	89	1	667	40	11	22	25	1.87
2669043--2669081	16	2.4	16	95	0	69	51	17	5	25	1.66
2681409--2681957	45	12.2	45	85	4	626	43	12	19	24	1.86
2683873--2683960	24	3.5	24	92	6	131	45	0	1	53	1.07
2683897--2684025	63	2.0	65	95	3	235	43	0	2	54	1.13
2683871--2684001	24	5.9	22	79	13	112	45	0	1	53	1.09
2684020--2684081	19	3.3	19	78	15	58	37	1	0	61	1.06
2684550--2684610	31	2.0	31	90	0	95	45	9	4	39	1.59
2685496--2685542	24	2.0	25	87	8	71	14	21	19	44	1.86
2691222--2691283	2	31.5	2	96	3	117	50	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17