genome.fa.s186.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000186.1 Hibiscus syriacus cultivar Beakdansim tig00000329_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3152351

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  11  of  17  ( 1977 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1851535--1851576	22	1.9	22	85	9	59	78	7	9	4	1.08
1852546--1852626	32	2.5	32	81	0	90	30	13	23	32	1.93
1852917--1853467	166	3.3	168	79	7	522	35	21	16	26	1.94
1852917--1853491	83	6.9	85	79	5	466	35	22	15	26	1.94
1853861--1855425	181	8.5	182	85	4	1960	31	27	15	24	1.96
1853861--1855425	363	4.2	366	86	3	1993	31	27	15	24	1.96
1853861--1855433	555	2.8	546	86	4	2077	31	27	15	24	1.96
1859936--1859980	16	2.8	16	100	0	90	37	11	6	44	1.66
1862418--1862514	27	3.6	26	68	15	63	22	8	17	51	1.72
1862405--1862516	53	2.2	51	86	3	152	20	7	20	51	1.70
1864266--1864379	59	2.0	57	92	3	192	35	7	8	48	1.63
1869074--1869157	20	4.2	20	76	3	96	34	22	17	25	1.96
1869131--1869237	40	2.7	41	83	11	127	37	25	15	21	1.93
1869151--1869237	20	4.3	20	85	10	115	37	26	14	20	1.92
1869204--1869276	19	3.7	19	85	5	83	34	21	10	32	1.89
1869269--1869315	18	2.5	19	79	6	51	29	19	14	36	1.92
1869452--1869488	16	2.4	16	86	8	51	29	5	0	64	1.15
1870219--1870265	24	2.0	24	91	0	76	25	21	19	34	1.96
1870224--1870277	24	2.2	24	93	0	90	20	18	20	40	1.91
1872533--1872568	18	2.0	18	94	0	63	55	25	2	16	1.55
1872768--1872823	19	2.8	20	86	5	87	42	21	19	16	1.89
1872998--1873169	66	2.6	64	87	8	229	52	15	2	29	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1874486--1874579	21	4.5	20	76	12	91	23	21	36	19	1.95
1874486--1874604	42	2.8	42	84	5	143	26	20	33	19	1.96
1874510--1874604	21	4.5	21	82	5	104	28	18	32	20	1.96
1876623--1876689	20	3.3	20	89	0	107	52	20	16	10	1.73
1876632--1876697	20	3.3	19	91	4	96	57	15	15	12	1.65
1876719--1876758	20	2.0	20	85	0	53	25	17	12	45	1.83
1877276--1877446	20	8.6	20	80	13	174	18	16	25	40	1.90
1877276--1877446	60	2.8	60	85	5	222	18	16	25	40	1.90
1877276--1877481	60	3.4	60	81	9	172	18	16	27	37	1.92
1884365--1884410	21	2.2	21	84	7	58	32	4	13	50	1.61
1884542--1884606	22	2.8	22	76	15	69	63	0	1	35	1.04
1884538--1884616	25	3.1	25	80	10	81	63	0	1	35	1.03
1884548--1884613	7	8.5	8	76	18	52	62	0	1	36	1.05
1885092--1885169	33	2.4	32	89	4	113	64	11	1	23	1.34
1885119--1885177	13	5.0	13	74	19	58	66	11	0	22	1.24
1891921--1891954	17	1.9	18	88	5	52	58	2	0	38	1.13
1892140--1892176	17	2.1	18	90	5	58	43	0	0	56	0.99
1892987--1893011	1	25.0	1	100	0	50	0	0	0	100	0.00
1895131--1895204	3	24.7	3	94	0	130	35	1	0	63	1.03
1900777--1900808	15	2.2	15	94	5	57	46	6	3	43	1.44
1908073--1908132	16	3.9	16	76	8	70	81	0	15	3	0.81
1908073--1908133	15	4.0	15	75	10	61	80	0	16	3	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1908074--1908130	30	1.9	30	92	0	96	80	0	15	3	0.84
1909271--1909572	83	3.6	83	92	3	509	25	14	23	36	1.93
1910328--1910755	113	3.8	113	91	1	682	38	13	19	28	1.90
1911075--1911154	3	26.7	3	94	0	142	35	1	0	63	1.02
1913633--1913657	3	8.3	3	100	0	50	36	0	32	32	1.58
1915449--1915478	15	2.1	15	93	6	53	30	0	3	66	1.07
1916079--1916125	20	2.5	20	86	10	64	29	0	0	70	0.88
1919017--1919051	18	1.9	18	94	0	61	28	34	20	17	1.95
1919512--1919558	23	2.0	24	88	12	71	42	14	0	42	1.46
1923697--1923745	22	2.2	23	85	7	66	24	24	20	30	1.98
1924390--1924614	32	7.1	32	94	2	354	34	21	18	25	1.96
1929304--1929355	26	2.0	26	85	14	72	32	1	0	65	1.04
1929311--1929348	16	2.3	17	90	4	60	31	2	0	65	1.06
1941311--1941526	110	2.0	109	83	5	278	55	5	13	25	1.59
1942152--1943440	657	2.0	654	92	2	2131	35	14	11	38	1.82
1943401--1943480	20	4.0	20	83	0	88	23	25	10	41	1.85
1954985--1955009	13	1.9	13	100	0	50	60	0	40	0	0.97
1955187--1955247	19	3.0	20	78	9	61	49	21	1	27	1.59
1956547--1956600	27	1.9	29	81	7	67	46	1	0	51	1.11
1958667--1958740	32	2.3	32	100	0	148	25	29	24	20	1.99
1960929--1960973	13	3.4	13	75	6	54	35	20	24	20	1.96
1963053--1963077	12	2.1	12	100	0	50	48	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1963127--1963282	78	2.0	78	87	6	226	42	8	10	37	1.70
1967175--1967211	19	1.9	19	94	0	65	54	0	0	45	1.00
1967534--1967990	171	2.6	178	83	6	537	43	12	15	28	1.84
1970015--1970045	14	2.2	14	94	0	53	19	9	61	9	1.54
1970122--1970185	21	3.1	21	86	2	85	42	10	29	17	1.83
1971456--1971480	4	6.2	4	100	0	50	24	0	28	48	1.52
1972032--1972076	18	2.6	18	96	3	83	33	2	11	53	1.49
1972297--1972668	195	1.9	194	92	3	624	37	14	18	29	1.90
1974968--1975027	21	2.8	20	76	13	66	28	18	31	21	1.97
1974952--1975038	22	4.0	22	75	8	79	28	19	28	22	1.98
1975057--1975257	97	2.0	99	92	5	336	36	24	13	25	1.92
1976564--1976617	18	2.8	20	78	18	69	20	27	24	27	1.99
1978773--1978819	18	2.7	17	87	6	67	72	6	4	17	1.22
1980115--1980215	3	35.0	3	81	11	122	62	0	0	36	1.02
1980343--1981193	145	5.8	150	91	5	1368	35	21	21	21	1.96
1980343--1981193	74	11.6	74	92	5	1360	35	21	21	21	1.96
1980343--1981193	220	3.9	221	91	5	1356	35	21	21	21	1.96
1981135--1981239	46	2.3	47	96	1	194	29	22	22	24	1.99
1981059--1981314	122	2.1	122	97	1	487	33	21	21	23	1.97
1980985--1981389	197	2.1	197	93	3	701	34	21	21	22	1.97
1981182--1981523	75	4.6	75	93	3	568	35	21	21	21	1.96
1981182--1981523	149	2.3	150	92	3	568	35	21	21	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1982321--1982545	114	2.0	113	87	0	324	31	20	15	33	1.93
1984652--1984691	14	3.1	13	85	7	55	2	15	0	82	0.77
1984652--1984699	21	2.2	21	81	3	60	2	18	0	79	0.84
1989360--1989410	20	2.6	21	78	9	63	66	0	7	25	1.18
1994497--1994540	11	3.9	11	82	5	52	50	0	0	50	1.00
1994580--1994626	17	2.7	17	90	3	67	74	6	4	14	1.17
1995949--1996073	3	41.0	3	85	3	169	61	2	0	36	1.09
1996372--1997084	184	3.9	184	95	1	1274	36	13	16	33	1.88
2000294--2000338	23	2.0	23	86	0	63	35	13	11	40	1.80
2016003--2016045	3	14.3	3	100	0	86	32	0	0	67	0.91
2020332--2020418	35	2.5	34	80	12	97	54	10	8	27	1.62
2022758--2022796	18	2.2	18	95	4	71	64	2	0	33	1.08
2039341--2039378	3	12.7	3	100	0	76	0	34	0	65	0.93
2040688--2040737	26	2.0	26	84	4	66	30	24	6	40	1.79
2047877--2048093	81	2.7	80	82	4	249	38	23	18	19	1.93
2047877--2048091	20	10.6	20	75	7	166	38	23	19	18	1.93
2047942--2048088	40	3.6	40	91	1	231	38	23	19	19	1.93
2047877--2048091	101	2.1	101	80	3	236	38	23	19	18	1.93
2048650--2048728	20	3.9	21	86	5	94	51	17	18	11	1.75
2048727--2048771	19	2.4	19	96	0	81	46	28	17	6	1.73
2048772--2048845	19	3.8	19	83	3	103	12	20	17	50	1.78
2050542--2050864	94	3.4	94	96	0	585	21	13	19	46	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2051214--2051318	21	5.0	21	74	3	86	22	35	18	23	1.96
2052673--2052708	14	2.6	14	90	0	54	30	0	22	47	1.52
2052843--2053028	19	10.8	19	71	22	151	45	17	22	14	1.85
2052881--2053001	14	7.6	14	69	24	71	43	19	23	13	1.86
2052862--2053021	33	4.8	33	93	0	275	45	18	22	13	1.85
2053057--2053099	19	2.3	19	91	0	68	18	18	13	48	1.80
2053766--2053831	18	3.6	18	83	4	78	24	15	22	37	1.92
2053800--2053970	20	8.4	20	77	5	182	19	18	23	38	1.93
2053784--2053970	40	4.7	40	89	2	261	19	18	23	38	1.93
2053784--2053992	41	5.2	39	86	5	187	20	18	23	37	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17