genome.fa.s186.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000186.1 Hibiscus syriacus cultivar Beakdansim tig00000329_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3152351

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  5  of  17  ( 1977 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
941353--941481	19	7.3	19	75	17	125	8	17	28	45	1.77
941353--941444	33	2.8	33	93	3	150	7	18	28	45	1.76
941525--941904	93	4.1	93	99	0	753	46	18	12	22	1.83
941525--941904	185	2.0	186	99	0	753	46	18	12	22	1.83
943609--943698	14	5.7	14	74	23	81	41	23	26	8	1.84
943601--943715	33	3.5	33	92	0	203	44	20	25	9	1.82
943608--943720	19	6.8	18	72	23	88	42	22	25	9	1.84
943732--943786	14	3.6	14	73	21	56	9	27	23	40	1.85
943907--943979	33	2.2	33	90	2	112	47	19	20	12	1.81
944159--944213	22	2.5	22	81	0	74	20	16	40	23	1.91
944359--944551	20	9.6	20	82	5	219	19	19	25	35	1.95
944359--944551	60	3.2	60	83	0	251	19	19	25	35	1.95
944607--944658	20	2.6	20	96	0	95	21	13	26	38	1.90
944898--944927	15	2.0	15	100	0	60	46	6	13	33	1.69
950665--950734	32	2.2	32	94	0	122	37	0	34	28	1.58
950912--950948	2	18.5	2	100	0	74	51	0	0	48	1.00
959520--959629	36	3.0	38	78	8	136	40	11	15	32	1.84
959520--959757	70	3.4	70	80	11	249	40	11	18	29	1.86
959520--959687	34	4.8	36	76	8	141	41	11	17	29	1.85
960054--960102	19	2.5	19	80	3	53	32	28	16	22	1.95
960107--960182	21	3.7	21	75	3	73	26	21	17	35	1.95
960175--960224	20	2.5	20	86	0	73	32	20	18	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
962401--962445	21	2.1	21	84	8	56	22	15	33	28	1.95
962450--962499	21	2.4	21	80	6	57	20	12	38	30	1.88
964002--964099	21	4.7	20	79	13	99	20	33	19	26	1.96
964002--964109	42	2.6	42	85	5	130	19	35	18	26	1.95
964044--964109	21	3.1	21	77	12	73	18	36	19	25	1.94
965452--965488	17	2.1	18	95	5	67	32	0	18	48	1.49
965476--965624	64	2.3	64	91	0	235	28	2	16	53	1.54
965720--965813	20	4.7	20	85	2	109	43	19	17	20	1.88
965725--965813	40	2.2	40	91	0	142	43	19	16	20	1.88
968296--968349	24	2.2	24	90	0	81	46	22	12	18	1.83
968475--968508	12	2.8	12	90	0	50	14	0	29	55	1.40
969293--969381	20	4.4	22	72	17	68	35	14	21	28	1.93
969294--969404	40	2.8	40	78	1	132	35	13	20	30	1.91
969314--969383	20	3.5	19	76	7	77	34	15	22	27	1.95
969398--969484	21	4.2	21	94	1	140	36	16	26	20	1.93
971161--971228	30	2.3	30	95	5	122	41	10	10	38	1.73
978405--978479	30	2.5	30	84	0	96	21	22	20	36	1.96
979708--979745	2	20.0	2	89	10	62	50	0	0	50	1.00
985374--985404	3	10.3	3	92	0	53	64	0	0	35	0.94
995944--995969	13	2.0	13	100	0	52	15	30	0	53	1.42
1000858--1000938	40	2.0	40	100	0	162	32	16	19	32	1.94
1002813--1002863	26	2.0	26	96	0	93	25	13	17	43	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1004971--1005001	15	2.1	15	93	0	53	45	0	0	54	0.99
1010289--1010357	33	2.1	33	100	0	138	27	14	23	34	1.94
1011238--1011297	29	2.1	28	84	6	77	53	1	1	43	1.20
1011428--1011492	10	6.0	10	72	20	51	61	4	0	33	1.16
1011430--1011492	23	2.7	23	97	0	117	60	4	0	34	1.18
1011705--1011800	48	2.0	49	89	2	149	33	10	10	45	1.72
1014321--1014466	73	2.0	73	100	0	292	49	6	13	30	1.68
1015164--1015230	5	13.8	5	69	12	50	71	1	2	23	1.08
1015192--1015230	20	2.0	20	100	0	78	71	0	2	25	0.98
1016463--1016500	2	19.0	2	100	0	76	50	0	0	50	1.00
1017530--1017585	29	1.9	29	96	0	103	16	39	26	17	1.91
1017634--1017753	61	2.0	61	91	3	197	15	18	35	30	1.92
1018240--1018294	18	3.4	18	65	31	52	38	0	9	52	1.33
1018557--1018634	30	2.6	29	84	15	97	43	2	8	44	1.49
1018578--1018658	22	3.3	22	70	23	72	45	1	11	41	1.47
1019940--1019984	23	2.0	23	86	0	63	40	2	2	55	1.24
1019934--1019984	23	2.5	20	77	20	52	39	1	1	56	1.22
1020902--1020986	21	4.2	21	66	19	54	45	12	0	41	1.42
1020872--1021287	60	6.8	60	75	11	396	44	11	2	41	1.54
1021059--1021130	14	4.7	14	74	15	54	47	9	1	41	1.45
1021059--1021144	21	3.8	22	69	20	61	50	8	1	40	1.40
1021061--1021168	48	2.2	49	95	1	191	46	10	0	42	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1021152--1021236	21	4.2	21	66	19	54	45	12	0	41	1.42
1021222--1021384	48	3.4	48	94	3	274	46	11	0	41	1.40
1021059--1021553	216	2.3	216	89	4	757	46	11	0	41	1.42
1021319--1021444	60	2.1	60	92	4	211	45	14	0	40	1.45
1021059--1021553	109	4.6	109	87	5	727	46	11	0	41	1.42
1021378--1021493	49	2.3	49	92	4	189	45	13	0	40	1.44
1021428--1021575	60	2.5	60	91	3	246	45	14	0	40	1.45
1021547--1021639	26	3.6	26	80	7	100	41	7	2	48	1.43
1021601--1021809	61	3.6	60	77	13	256	44	9	1	44	1.46
1021666--1021752	26	3.3	26	93	0	147	42	5	3	48	1.44
1021567--1021809	113	2.2	112	87	5	357	44	8	2	45	1.45
1021650--1021778	52	2.5	52	74	13	138	44	7	2	44	1.45
1021949--1022038	18	4.8	18	68	18	67	43	7	0	48	1.31
1025003--1025063	26	2.4	24	76	15	59	42	1	6	49	1.38
1025110--1025154	21	2.2	21	84	4	56	40	6	6	46	1.56
1025299--1025358	17	3.3	17	73	15	57	50	11	0	38	1.39
1025815--1025839	8	3.1	8	100	0	50	60	12	0	28	1.32
1025858--1025906	21	2.3	21	85	3	71	53	16	0	30	1.43
1026061--1026103	6	7.2	6	86	0	50	4	27	18	48	1.68
1026523--1026677	36	4.0	36	78	15	184	18	39	21	20	1.93
1026507--1026735	82	2.6	86	89	8	340	19	39	20	20	1.92
1026646--1026738	29	3.2	29	62	17	75	19	36	22	21	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1026732--1026811	29	2.8	29	92	0	133	7	23	36	32	1.83
1028137--1028163	2	13.5	2	100	0	54	48	0	0	51	1.00
1028724--1028794	2	36.0	2	97	2	135	50	0	0	49	1.00
1029647--1029682	17	2.1	18	89	5	56	61	8	0	30	1.26
1030519--1030557	6	6.7	6	88	5	53	82	0	0	17	0.68
1030513--1030556	17	2.5	18	82	14	56	77	2	0	20	0.88
1030518--1030551	14	2.4	14	90	0	50	79	0	0	20	0.73
1030968--1031003	17	2.1	17	94	0	63	50	16	0	33	1.46
1032134--1032364	53	4.4	53	86	1	293	23	25	19	31	1.98
1032735--1032821	42	2.1	41	87	4	122	34	24	16	25	1.95
1032775--1032987	80	2.7	80	93	0	354	29	21	17	30	1.96
1032949--1033173	42	5.1	42	71	11	173	29	21	20	28	1.98
1032970--1033030	20	3.0	20	71	17	61	29	24	22	22	1.99
1032959--1033022	20	3.0	21	70	17	69	31	25	18	25	1.98
1033018--1033042	13	1.9	13	100	0	50	24	20	24	32	1.98
1032896--1033165	135	2.0	135	90	1	425	28	22	18	31	1.97
1039460--1039495	6	6.0	6	93	0	63	47	16	19	16	1.83
1042022--1042054	11	2.8	12	86	9	50	84	0	0	15	0.61
1042022--1042055	17	2.0	17	94	0	59	85	0	0	14	0.60
1042467--1042502	17	2.1	17	94	0	63	50	16	0	33	1.46
1043601--1043648	25	1.9	25	86	0	69	41	2	22	33	1.66
1044454--1044493	21	1.9	21	94	0	71	12	20	25	42	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1045116--1045192	33	2.4	32	89	4	127	44	15	9	31	1.78
1045181--1045222	21	2.0	21	100	0	84	47	9	14	28	1.75
1049663--1049714	27	1.9	27	100	0	104	25	15	23	36	1.93
1059899--1059952	17	3.1	17	81	7	56	40	11	11	37	1.76
1063764--1063841	33	2.4	33	95	4	142	37	3	8	50	1.52
1067843--1067894	21	2.4	22	84	9	63	36	13	0	50	1.42
1069116--1069166	15	3.0	16	81	18	59	70	1	0	27	0.98
1071153--1072094	84	11.3	84	83	1	1068	24	18	24	32	1.97
1072140--1072649	124	4.2	124	86	2	678	25	16	25	32	1.96
1072136--1072596	247	1.9	248	89	0	726	25	17	24	32	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17