genome.fa.s186.2.7.7.80.10.50.1000.16.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000186.1 Hibiscus syriacus cultivar Beakdansim tig00000329_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3152351

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  16  of  17  ( 1977 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2857970--2858052	41	2.0	41	100	0	166	19	37	12	31	1.88
2866424--2867010	276	2.1	275	93	0	994	32	14	22	29	1.94
2867599--2867640	21	2.0	21	95	0	75	26	28	21	23	1.99
2867746--2867812	19	3.5	19	91	0	89	35	13	10	40	1.79
2867814--2867888	31	2.4	31	93	4	125	41	17	8	33	1.78
2868051--2868099	24	2.0	24	96	0	89	32	2	8	57	1.40
2871444--2871525	21	3.8	20	77	15	67	24	36	24	14	1.93
2879777--2879809	4	8.2	4	100	0	66	48	27	0	24	1.51
2883693--2883764	23	3.0	24	75	15	78	37	11	6	44	1.67
2889359--2889471	24	5.3	24	61	27	74	46	10	15	28	1.79
2889349--2889485	41	3.3	41	96	1	247	46	13	16	24	1.82
2890591--2890626	18	1.9	19	94	5	65	38	8	0	52	1.32
2890810--2890843	17	2.0	17	88	0	50	47	0	0	52	1.00
2890878--2890911	16	2.2	15	89	5	50	32	0	0	67	0.91
2897436--2897580	38	3.8	38	92	1	229	35	10	16	37	1.83
2897704--2897733	14	2.1	14	93	0	51	33	10	6	50	1.62
2902074--2902122	24	2.0	24	100	0	98	42	12	12	32	1.79
2903593--2903651	26	2.3	26	100	0	118	37	5	3	54	1.39
2918309--2918881	112	5.1	112	93	1	918	46	14	13	24	1.81
2918309--2918881	223	2.6	223	92	1	925	46	14	13	24	1.81
2918753--2919207	182	2.5	182	92	0	741	43	13	15	27	1.84
2920401--2920476	29	2.8	28	80	13	95	36	0	0	63	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2920409--2920476	26	2.6	25	84	9	84	36	0	0	63	0.95
2920400--2920456	3	19.7	3	82	13	75	35	0	0	64	0.93
2920887--2920940	28	2.0	27	82	10	65	53	31	11	3	1.53
2921713--2921783	25	2.9	25	75	20	62	26	1	5	66	1.22
2933685--2933719	18	1.9	18	100	0	70	31	5	5	57	1.46
2934895--2935541	123	5.5	123	80	11	685	38	14	19	27	1.90
2935018--2935458	112	3.8	112	83	8	451	38	14	18	28	1.90
2935244--2935541	124	2.5	119	87	8	424	39	14	19	25	1.90
2935781--2935848	3	23.7	3	85	14	99	33	0	0	66	0.92
2935798--2935866	18	3.8	19	83	11	83	36	1	0	62	1.04
2937105--2937175	25	2.9	25	75	20	62	26	1	5	66	1.22
2940007--2940094	3	29.3	3	100	0	176	67	0	0	32	0.91
2945084--2945142	29	2.0	29	100	0	118	23	13	13	49	1.78
2949741--2949799	29	2.0	29	100	0	118	23	13	13	49	1.78
2950344--2950399	30	1.9	29	82	13	71	23	10	8	57	1.61
2950403--2950493	42	2.1	42	78	7	94	27	8	7	56	1.57
2950425--2950621	42	4.6	42	74	10	170	24	16	8	50	1.73
2950556--2950697	76	1.9	75	80	10	164	23	19	9	46	1.80
2950684--2950714	16	1.9	16	100	0	62	12	19	6	61	1.53
2950704--2950871	44	3.9	44	82	5	200	26	14	10	49	1.74
2950710--2950842	42	3.1	42	91	2	194	25	15	9	49	1.74
2950769--2950932	89	1.9	87	81	2	202	26	17	7	48	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2956131--2956163	16	2.1	16	94	0	57	48	18	0	33	1.48
2957498--2957527	13	2.2	14	94	5	53	36	6	20	36	1.79
2960891--2960938	5	9.6	5	95	0	87	2	58	0	39	1.10
2965963--2966954	495	2.0	495	98	0	1921	42	14	13	29	1.83
2966915--2966939	13	1.9	13	100	0	50	40	12	8	40	1.72
2969493--2969526	17	1.9	18	88	5	52	50	5	5	38	1.51
2971133--2971191	31	1.9	31	92	0	100	40	6	10	42	1.65
2971216--2971258	22	2.0	22	90	0	68	51	13	0	34	1.42
2971206--2972337	54	20.6	54	72	13	819	52	13	0	33	1.43
2971272--2971346	22	3.2	23	77	11	89	56	16	0	28	1.41
2971340--2971393	14	3.6	14	72	18	54	57	5	0	37	1.22
2971238--2972471	112	11.2	111	76	15	733	52	14	0	33	1.43
2971189--2972221	166	6.3	163	79	13	903	52	13	0	33	1.43
2971382--2971423	22	1.9	22	100	0	84	50	14	0	35	1.43
2971384--2971432	22	2.2	22	85	3	62	53	14	2	30	1.52
2971494--2971536	22	2.0	22	100	0	86	51	13	0	34	1.42
2971496--2971544	22	2.2	22	88	3	71	55	14	0	30	1.40
2971553--2971624	22	3.0	23	78	13	76	54	18	0	27	1.44
2971628--2971670	22	2.0	22	95	0	77	51	11	0	37	1.39
2971672--2971725	14	3.6	14	72	18	54	57	5	0	37	1.22
2971825--2971867	22	2.0	22	95	0	77	48	13	0	37	1.43
2971436--2972471	80	12.6	82	78	14	810	52	14	0	33	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2971827--2971875	22	2.2	22	85	3	62	53	14	0	32	1.41
2971881--2971955	22	3.2	22	75	14	69	54	16	0	29	1.42
2971964--2972035	22	3.0	23	78	13	76	54	18	0	27	1.44
2972151--2972193	22	2.0	22	95	0	77	51	11	0	37	1.39
2972153--2972201	22	2.2	22	85	3	62	55	12	0	32	1.37
2972275--2972328	14	3.6	14	72	18	54	55	7	0	37	1.28
2972348--2972563	54	4.1	54	93	5	374	53	11	0	35	1.37
2972397--2972439	22	2.0	22	100	0	86	51	13	0	34	1.42
2972399--2972447	22	2.2	22	88	3	71	55	14	0	30	1.40
2972496--2972645	15	9.5	15	74	15	133	52	4	0	43	1.22
2972419--2972516	32	3.4	32	73	26	126	53	11	0	35	1.37
2976206--2976248	21	2.0	21	86	8	61	27	30	16	25	1.97
2981289--2981319	14	2.2	14	100	0	62	35	12	12	38	1.82
2981507--2981565	18	3.3	18	92	0	100	27	33	16	22	1.95
2981507--2981576	18	3.9	18	90	0	95	30	32	17	20	1.95
2982311--2982366	22	2.5	22	100	0	112	23	23	23	30	1.99
2982410--2982462	22	2.5	22	84	9	74	28	26	13	32	1.93
2982410--2982485	21	3.6	21	74	10	73	28	27	13	30	1.94
2983763--2983797	18	1.9	18	94	0	61	31	17	20	31	1.95
2994333--2994398	31	2.1	32	88	2	98	21	9	28	40	1.83
2998383--2998412	15	1.9	16	93	6	53	50	3	0	46	1.18
2999845--2999913	29	2.3	30	74	16	72	40	1	1	56	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3001748--3001802	2	27.5	2	84	0	74	45	1	5	47	1.36
3001759--3001825	12	5.4	12	78	7	62	46	7	4	41	1.52
3002655--3002685	15	2.1	15	93	0	53	54	0	0	45	0.99
3010506--3010541	2	18.0	2	100	0	72	50	0	0	50	1.00
3010642--3010743	53	1.9	53	85	0	141	35	9	19	35	1.85
3011748--3011776	15	2.0	15	93	6	51	48	6	3	41	1.47
3025375--3025422	23	2.1	23	84	0	60	37	12	16	33	1.86
3025798--3025840	21	2.1	21	86	4	61	48	9	13	27	1.73
3025840--3025912	23	3.2	22	81	14	85	39	20	4	35	1.72
3026228--3026267	21	2.0	21	85	5	55	47	7	15	30	1.72
3025489--3026549	430	2.5	430	97	0	1989	38	11	7	42	1.70
3026280--3026342	23	2.7	23	87	0	90	38	19	4	38	1.73
3027336--3027670	183	1.8	183	90	1	537	33	16	14	35	1.89
3028526--3029915	199	7.1	199	88	5	2166	31	16	15	36	1.90
3028526--3030288	398	4.5	398	92	4	3051	31	16	14	36	1.90
3028526--3030288	597	3.0	580	93	4	2909	31	16	14	36	1.90
3029720--3030288	184	3.0	184	87	7	729	32	17	14	35	1.90
3029904--3030288	199	1.9	199	98	0	752	32	17	14	35	1.90
3030972--3031015	21	2.1	21	91	0	70	15	31	11	40	1.83
3033122--3033179	19	2.7	23	79	20	88	20	12	13	53	1.72
3033317--3033363	20	2.3	20	89	10	78	17	17	10	55	1.69
3033412--3034130	228	3.1	229	97	1	1345	39	8	7	44	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3034352--3034381	11	2.8	11	95	5	53	36	20	6	36	1.79
3034939--3034994	16	3.5	16	80	4	60	32	14	5	48	1.66
3034996--3035038	19	2.3	19	87	0	59	44	0	11	44	1.40
3035672--3035718	18	2.6	18	86	6	51	42	2	10	44	1.51
3035810--3035858	15	3.1	17	75	16	52	48	8	4	38	1.52
3035871--3035925	16	3.6	16	83	11	62	41	0	9	49	1.34
3035868--3035925	14	3.9	16	80	13	70	41	0	8	50	1.33
3037000--3037108	27	3.9	27	77	12	114	50	3	4	41	1.40
3036986--3037108	7	17.6	7	71	17	62	50	3	4	41	1.40
3036986--3037371	20	19.0	20	64	22	82	47	4	4	43	1.44

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17