genome.fa.s186.2.7.7.80.10.50.1000.17.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000186.1 Hibiscus syriacus cultivar Beakdansim tig00000329_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3152351

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  17  of  17  ( 1977 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3037282--3037355	24	3.2	24	69	21	68	45	5	4	44	1.45
3036986--3037325	2	172.0	2	62	22	60	49	4	4	42	1.43
3037231--3037316	18	4.6	18	73	19	77	48	1	4	45	1.30
3038460--3038504	18	2.5	18	88	0	72	33	17	15	33	1.92
3041121--3041147	6	4.5	6	100	0	54	29	33	18	18	1.95
3043490--3043588	44	2.2	44	85	5	128	28	24	24	23	2.00
3044648--3044701	21	2.6	21	96	0	99	29	22	11	37	1.89
3046219--3046272	28	1.9	28	81	7	65	61	0	33	5	1.19
3048135--3048174	13	2.9	14	81	7	55	70	0	7	22	1.12
3048786--3048818	13	2.5	13	95	0	57	75	0	15	9	1.03
3053235--3053288	13	3.9	13	77	13	54	74	0	5	20	1.02
3060803--3060835	16	2.0	17	94	5	59	30	24	12	33	1.91
3062540--3062716	93	1.9	93	91	0	291	38	5	15	40	1.71
3065244--3065323	24	3.3	24	67	19	67	21	2	25	51	1.60
3069744--3069784	19	2.2	19	86	4	57	68	0	9	21	1.18
3069825--3069853	4	7.5	4	92	7	51	79	0	0	20	0.74
3070485--3070515	12	2.5	13	89	10	55	61	0	0	38	0.96
3070441--3070630	76	2.6	71	85	5	220	55	12	1	30	1.44
3070441--3070654	76	2.9	76	82	6	217	57	11	1	29	1.44
3073848--3073900	26	2.0	26	96	0	97	30	28	3	37	1.75
3073889--3073952	11	6.0	11	69	20	55	31	23	0	45	1.53
3073891--3073960	19	3.5	19	74	14	77	32	24	0	42	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3073886--3073970	42	2.0	42	100	0	170	28	27	0	44	1.54
3087506--3087546	19	2.2	19	86	4	57	68	0	9	21	1.18
3088204--3088390	76	2.6	75	85	5	233	57	11	1	30	1.41
3089221--3089297	20	3.8	20	70	3	55	31	22	19	27	1.98
3090229--3090274	20	2.2	21	88	3	67	17	13	34	34	1.88
3091643--3091722	26	3.2	25	73	20	67	52	22	0	25	1.47
3092180--3092215	2	18.0	2	100	0	72	50	0	0	50	1.00
3094387--3094417	2	15.5	2	100	0	62	48	0	0	51	1.00
3108248--3108279	14	2.1	16	88	11	50	37	9	6	46	1.61
3109080--3109133	23	2.3	23	87	9	74	42	3	3	50	1.38
3110306--3110368	17	3.7	17	78	17	69	17	7	0	74	1.05
3114372--3114613	106	2.3	106	91	1	387	35	25	16	23	1.95
3115098--3115346	84	3.0	84	81	3	243	31	24	17	26	1.97
3115195--3115380	84	2.2	84	80	4	196	31	23	17	26	1.97
3116736--3116760	5	5.0	5	100	0	50	20	0	0	80	0.72
3116736--3116784	13	3.5	13	80	8	53	22	2	0	75	0.90
3116736--3116788	18	2.9	19	86	8	74	20	3	0	75	0.96
3116880--3116942	4	15.5	4	79	9	65	26	3	0	69	1.03
3116871--3116916	17	2.8	16	83	9	65	26	4	0	69	1.07
3120892--3121153	106	2.5	106	94	1	445	33	25	19	21	1.97
3121618--3121871	84	3.0	84	81	4	255	31	24	17	26	1.97
3121712--3121889	84	2.1	85	81	5	209	31	22	19	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3123386--3123433	17	2.9	15	79	11	51	22	6	0	70	1.09
3123397--3123455	13	4.5	13	70	17	50	25	5	0	69	1.09
3125133--3125267	64	2.1	64	88	1	200	45	6	13	34	1.69
3125295--3126017	199	3.6	199	82	5	860	31	14	12	40	1.84
3130118--3131284	200	5.8	200	87	3	1516	31	15	14	37	1.88
3130118--3131284	399	2.9	395	86	3	1576	31	15	14	37	1.88
3132726--3133882	200	5.8	197	82	5	1317	31	15	14	38	1.88
3132748--3133882	400	2.8	399	87	2	1552	31	15	15	38	1.89
3136114--3136157	21	2.1	21	95	0	79	13	34	11	40	1.81
3138343--3138834	182	2.7	182	93	0	797	28	15	14	41	1.87
3140041--3140074	2	17.0	2	100	0	68	50	0	0	50	1.00
3141986--3142020	17	2.1	17	94	0	61	14	5	0	80	0.89
3148295--3148332	20	1.9	19	89	5	58	21	13	0	65	1.26

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17

The End!