genome.fa.s190.2.7.7.80.10.50.1000.41.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000190.1 Hibiscus syriacus cultivar Beakdansim tig00000340_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14308945

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   

This is table  41  of  62  ( 7381 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9651154--9651559	165	2.5	165	87	1	544	33	14	17	34	1.90
9652462--9652502	2	20.5	2	100	0	82	51	0	0	48	1.00
9654895--9654993	42	2.3	42	85	11	123	21	18	24	36	1.95
9662573--9662618	21	2.2	21	92	0	74	39	8	15	36	1.78
9662573--9662612	21	1.9	21	100	0	80	35	10	15	40	1.80
9663249--9663292	21	2.1	21	91	0	70	38	13	13	34	1.84
9665580--9665627	6	8.2	6	86	9	64	81	0	2	16	0.79
9665584--9665627	11	3.8	11	82	17	54	81	0	2	15	0.78
9666220--9666249	15	2.0	15	93	0	51	60	3	6	30	1.39
9671497--9671536	3	14.3	3	80	15	50	32	0	0	67	0.91
9671496--9671544	14	3.5	14	78	15	57	32	0	0	67	0.91
9671496--9671534	19	2.1	19	90	0	60	30	0	0	69	0.89
9671498--9671541	22	2.0	23	90	4	72	34	0	0	65	0.93
9671498--9671544	11	4.5	11	80	15	55	34	0	0	65	0.93
9673477--9673534	29	1.9	29	82	6	71	34	1	1	62	1.16
9673581--9673618	17	2.2	18	85	4	51	52	2	0	44	1.14
9674140--9674189	20	2.4	21	83	9	59	28	2	2	68	1.12
9675562--9675646	43	2.0	44	85	2	118	32	10	24	31	1.89
9683206--9683269	22	2.9	22	83	0	83	31	17	12	39	1.87
9683672--9684087	113	3.7	113	87	2	564	37	13	19	29	1.90
9684577--9684620	11	3.9	11	85	8	54	34	0	0	65	0.93
9684577--9684644	16	4.1	16	72	20	52	39	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9684676--9684722	14	3.3	14	96	3	85	38	29	19	12	1.89
9686592--9686649	29	1.9	29	82	6	71	34	1	1	62	1.16
9686698--9686735	17	2.2	18	85	4	51	52	2	0	44	1.14
9687520--9687675	78	2.0	78	98	0	303	33	17	16	32	1.92
9692177--9692234	2	29.0	2	100	0	116	50	0	0	50	1.00
9694706--9694958	137	1.8	137	89	0	398	27	14	18	39	1.90
9695584--9695621	18	2.2	18	90	4	60	57	0	7	34	1.28
9699148--9699173	9	2.9	9	100	0	52	46	0	19	34	1.50
9699819--9699861	21	2.0	21	90	0	68	32	27	23	16	1.96
9699891--9699935	22	2.0	22	82	4	54	28	28	26	15	1.96
9700372--9700416	2	22.5	2	100	0	90	51	0	0	48	1.00
9701536--9701594	23	2.6	23	88	0	91	20	28	25	25	1.99
9701632--9701665	17	2.1	17	88	5	52	32	23	5	38	1.79
9704942--9704984	21	2.0	21	86	0	59	30	27	25	16	1.97
9705495--9705541	2	23.5	2	100	0	94	51	0	0	48	1.00
9706695--9706753	23	2.6	23	86	0	82	20	27	25	27	1.99
9706717--9706761	23	2.0	23	86	0	63	20	20	26	33	1.97
9706791--9706824	17	2.1	17	88	5	52	32	23	5	38	1.79
9719539--9719571	15	2.2	15	89	10	50	81	0	0	18	0.68
9719541--9719578	19	2.0	19	90	10	60	78	0	0	21	0.74
9725243--9725283	2	20.5	2	100	0	82	51	0	0	48	1.00
9729021--9729141	32	3.8	32	85	2	147	27	17	20	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9730615--9730679	31	2.0	33	85	5	89	78	4	1	15	0.99
9730614--9730691	12	6.9	11	75	16	54	75	6	1	16	1.07
9732206--9732252	25	1.9	25	91	4	78	8	2	29	59	1.39
9732924--9732963	20	2.0	20	95	0	71	22	20	32	25	1.98
9732929--9732978	20	2.5	20	83	0	55	30	16	26	28	1.96
9732954--9733045	41	2.2	41	79	7	98	36	16	18	28	1.92
9733062--9733217	59	2.7	59	86	4	217	27	12	28	30	1.93
9733239--9733352	42	2.7	41	74	14	108	30	18	21	28	1.97
9733347--9733667	58	5.6	57	76	5	249	39	19	9	30	1.84
9733347--9733673	115	2.9	111	76	11	304	40	18	9	30	1.83
9743434--9743836	200	2.0	202	96	3	751	31	13	22	33	1.93
9747801--9747843	16	2.6	17	82	10	63	58	6	2	32	1.38
9750910--9750985	37	2.1	37	97	0	143	30	17	11	40	1.85
9753011--9753234	63	3.4	66	76	13	176	43	8	6	41	1.60
9766181--9766260	23	3.7	22	83	8	94	16	25	33	25	1.95
9772344--9772424	23	3.7	21	79	9	74	24	30	23	20	1.99
9782105--9782396	100	2.9	100	91	0	485	36	8	10	44	1.70
9782915--9782974	19	2.9	21	90	7	88	70	3	8	18	1.27
9784889--9785020	45	3.0	43	83	6	167	22	19	12	45	1.83
9784892--9785020	43	2.9	45	83	5	165	23	18	12	45	1.83
9791701--9791815	39	2.7	41	81	11	117	53	5	17	23	1.63
9791683--9791855	43	4.1	42	78	8	147	50	5	19	24	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9791835--9791868	14	2.4	14	95	0	59	61	0	20	17	1.34
9791949--9792068	44	2.7	44	79	5	127	56	6	12	24	1.59
9791949--9792068	45	2.7	44	78	6	127	56	6	12	24	1.59
9800548--9800621	26	3.1	25	72	21	77	13	17	0	68	1.20
9800561--9800604	21	2.1	22	87	8	65	13	15	0	70	1.17
9800548--9800638	47	2.0	46	82	6	112	13	19	0	67	1.23
9805774--9805841	30	2.3	30	92	2	120	47	22	13	17	1.82
9807496--9807541	21	2.2	21	96	0	83	21	19	39	19	1.93
9807634--9807691	29	1.9	30	86	6	82	43	20	3	32	1.69
9809100--9809253	60	2.6	59	77	9	168	31	21	5	41	1.75
9809975--9810175	65	3.1	64	75	10	194	27	17	22	31	1.97
9812279--9812316	20	2.0	20	94	5	69	34	7	5	52	1.53
9812701--9812804	23	4.6	22	75	6	93	25	23	25	26	2.00
9816622--9816661	21	1.9	21	85	10	55	35	10	2	52	1.48
9818127--9818196	34	2.1	32	86	5	95	21	31	14	32	1.93
9818482--9818522	21	2.0	21	90	0	64	24	26	17	31	1.97
9818745--9818808	29	2.2	30	85	2	85	48	14	4	32	1.64
9821962--9822002	21	2.0	21	95	0	73	21	26	19	31	1.97
9822032--9822099	17	4.0	17	81	11	68	23	17	36	22	1.94
9822237--9822296	30	2.0	30	93	6	104	41	18	6	33	1.76
9825174--9825208	18	1.9	18	88	0	52	60	0	11	28	1.32
9826435--9826529	24	4.0	24	73	5	84	22	14	16	46	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9827299--9827458	65	2.5	65	89	7	238	28	16	23	32	1.96
9827299--9827499	65	3.1	63	80	13	221	26	16	23	32	1.96
9827888--9828078	60	3.2	60	78	10	162	39	6	19	33	1.78
9837158--9837205	23	2.1	23	85	11	64	16	2	10	70	1.24
9838786--9838921	70	1.9	71	92	1	229	23	14	11	50	1.76
9841943--9842081	60	2.3	60	79	11	151	33	20	4	42	1.71
9844402--9844459	20	2.7	20	84	10	71	31	18	22	27	1.97
9845373--9845468	30	3.2	30	83	2	95	19	21	27	31	1.98
9845400--9845471	29	2.4	30	88	2	101	20	20	27	30	1.98
9846297--9846337	17	2.5	16	88	11	57	21	0	2	75	0.92
9846549--9846581	15	2.1	16	88	5	50	30	3	3	63	1.24
9849033--9849115	23	3.7	23	85	6	100	28	18	25	27	1.98
9851332--9851414	36	2.3	36	93	0	148	28	12	42	16	1.84
9852730--9852787	20	2.6	22	89	10	84	31	20	22	25	1.98
9854268--9854335	23	3.0	23	77	0	73	20	26	25	27	1.99
9856287--9856383	29	3.3	29	95	0	176	50	2	20	26	1.59
9856812--9856888	38	2.0	38	100	0	154	53	2	23	20	1.58
9857870--9857927	20	2.6	22	89	10	84	31	20	22	25	1.98
9871792--9871904	60	1.9	60	84	0	154	32	22	6	38	1.79
9874524--9874571	22	2.2	22	81	7	53	62	0	6	31	1.20
9876431--9876503	31	2.4	31	76	0	74	24	15	12	47	1.79
9891163--9891196	17	2.0	17	94	0	59	41	2	2	52	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9892929--9892965	18	2.1	17	90	5	56	64	8	27	0	1.21
9892923--9892964	15	2.6	16	82	14	50	66	7	26	0	1.17
9897082--9897164	22	3.7	23	83	4	98	18	26	32	22	1.97
9908683--9908738	20	2.8	20	91	0	85	25	28	19	26	1.99
9909813--9909843	15	2.1	15	93	0	53	38	9	29	22	1.86
9919399--9919475	22	3.7	22	89	6	108	24	28	23	23	1.99
9919384--9919475	40	2.3	37	82	14	96	23	30	23	21	1.99
9920967--9921123	64	2.4	63	80	10	158	28	17	20	33	1.95
9927706--9927781	35	2.2	35	90	0	116	39	22	1	36	1.63
9929222--9929259	16	2.3	17	95	4	69	31	13	7	47	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62