genome.fa.s190.2.7.7.80.10.50.1000.51.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000190.1 Hibiscus syriacus cultivar Beakdansim tig00000340_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14308945

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   

This is table  51  of  62  ( 7381 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11939052--11939105	2	27.0	2	100	0	108	50	0	0	50	1.00
11939121--11939279	55	2.9	55	93	0	257	27	21	23	28	1.99
11945231--11945270	16	2.5	16	91	0	62	27	12	32	27	1.93
11950585--11950671	23	3.8	23	81	3	104	14	26	25	33	1.95
11950666--11950723	24	2.4	24	97	0	107	12	22	25	39	1.89
11957941--11957967	14	1.9	14	100	0	54	81	3	0	14	0.82
11972959--11973005	21	2.3	21	78	10	53	38	6	2	53	1.39
11985249--11985298	23	2.2	23	86	10	68	82	0	14	4	0.82
11985252--11985309	11	5.4	10	76	19	55	82	0	13	3	0.79
11985249--11985309	28	2.2	28	85	5	88	81	0	14	3	0.80
11985250--11985309	14	4.3	13	79	12	66	83	0	13	3	0.77
11985249--11985312	23	2.8	22	81	9	67	81	0	15	3	0.82
11988384--11988458	36	2.0	36	82	10	89	30	4	1	64	1.20
11988454--11988479	11	2.4	11	100	0	52	0	0	7	92	0.39
11988551--11988613	24	2.6	24	73	12	58	14	4	7	73	1.23
11990693--11990728	2	18.0	2	100	0	72	50	0	0	50	1.00
11991025--11991138	59	2.0	58	82	3	140	31	21	7	40	1.80
11991312--11991425	60	1.9	60	83	7	151	36	6	25	31	1.81
11991320--11991455	60	2.2	61	79	6	143	38	6	24	30	1.81
11995639--11995697	31	1.9	30	86	10	84	20	8	6	64	1.44
12000351--12000385	2	17.5	2	100	0	70	51	0	0	48	1.00
12018246--12018335	44	2.0	44	95	0	162	36	13	20	30	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12033920--12033958	19	2.1	19	100	0	78	0	23	10	66	1.22
12052717--12052760	23	1.9	23	90	0	70	29	4	27	38	1.76
12085025--12085088	32	2.0	31	85	8	85	35	7	9	46	1.65
12086684--12086887	95	2.1	95	85	1	284	35	16	23	25	1.95
12087294--12087738	79	5.6	79	93	0	755	37	11	22	28	1.90
12087428--12087718	34	7.6	34	69	22	177	36	12	22	28	1.90
12090367--12090447	30	2.7	30	94	0	135	29	12	27	30	1.93
12091688--12091730	22	2.0	22	86	9	61	51	18	23	6	1.70
12094083--12094122	18	2.2	18	90	0	62	47	15	0	37	1.45
12095887--12095928	5	8.8	5	79	10	52	2	19	54	23	1.55
12095887--12095928	14	2.9	14	85	3	57	2	19	54	23	1.55
12095886--12095925	19	2.2	18	81	4	53	2	20	55	22	1.56
12095927--12095989	10	6.5	10	76	10	60	34	28	17	19	1.94
12095925--12095982	19	3.1	19	85	5	73	31	29	22	17	1.96
12095927--12095989	29	2.2	29	82	5	74	34	28	17	19	1.94
12107191--12107242	3	17.0	3	88	4	77	61	0	0	38	0.96
12107545--12107635	45	2.0	45	84	0	119	29	18	21	29	1.97
12107583--12107793	76	2.8	76	89	0	305	35	19	19	25	1.96
12107649--12108192	121	4.4	121	88	4	696	34	20	21	23	1.97
12107735--12107838	45	2.3	45	91	0	163	34	20	20	25	1.96
12107555--12107909	197	1.8	197	91	0	584	33	20	21	25	1.97
12107856--12107956	45	2.2	45	92	0	166	34	19	21	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12107725--12108164	166	2.6	163	75	7	445	34	20	22	23	1.97
12107893--12108035	76	1.9	74	92	2	241	35	20	21	21	1.96
12107967--12108192	45	5.0	45	91	1	344	32	19	23	23	1.98
12109612--12109834	105	2.1	106	83	5	276	40	21	14	23	1.90
12111765--12111798	12	2.8	12	100	0	68	61	0	32	5	1.20
12112039--12112093	22	2.5	22	87	0	74	41	12	12	32	1.81
12116398--12116532	72	1.9	72	90	0	216	34	19	21	25	1.96
12118897--12118966	14	5.2	14	71	19	51	54	11	15	18	1.71
12118908--12118970	27	2.4	26	86	2	81	57	11	12	19	1.65
12119030--12119070	6	6.0	7	78	16	50	58	12	14	14	1.63
12119145--12119231	43	2.0	44	88	6	133	33	22	11	32	1.90
12120542--12120581	18	2.3	18	86	4	55	65	5	10	20	1.42
12120542--12120575	17	2.0	17	88	11	52	64	5	11	17	1.45
12122511--12122556	23	2.0	23	100	0	92	4	17	43	34	1.69
12122875--12122933	3	19.0	3	79	6	64	59	1	1	37	1.18
12122874--12122922	19	2.6	19	90	0	71	59	2	2	36	1.21
12124257--12124333	23	3.3	23	81	1	91	33	23	23	19	1.97
12129918--12129978	17	3.5	17	95	2	104	8	22	49	19	1.75
12129906--12129966	17	3.0	21	77	22	76	11	22	47	18	1.80
12129975--12130053	10	8.3	10	70	21	55	27	27	27	16	1.97
12129975--12130053	19	4.2	19	74	16	65	27	27	27	16	1.97
12137285--12137362	19	4.1	19	80	14	97	25	30	26	16	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12137283--12137361	10	8.3	9	80	9	86	25	30	29	15	1.96
12137289--12137382	9	9.8	9	71	13	53	27	27	26	18	1.98
12138839--12138935	22	4.5	22	90	3	153	30	20	28	19	1.97
12138839--12138947	22	5.0	22	87	3	87	30	23	26	19	1.98
12143513--12143586	22	3.4	22	88	1	114	29	21	31	17	1.96
12144625--12144670	24	2.0	24	82	4	58	26	26	23	23	2.00
12145219--12145776	278	2.0	278	100	0	1116	25	13	22	38	1.91
12149400--12149447	20	2.4	20	92	0	78	35	18	8	37	1.81
12151488--12151538	20	2.6	19	81	9	66	27	23	13	35	1.93
12156983--12157067	42	2.1	40	80	6	91	37	16	15	30	1.90
12157045--12157561	41	12.6	41	80	5	463	27	17	18	36	1.93
12157046--12157480	122	3.5	122	81	3	417	27	16	18	37	1.93
12157045--12157561	163	3.2	160	81	6	520	27	17	18	36	1.93
12159305--12159742	43	10.2	43	82	5	485	25	23	19	31	1.98
12164355--12164438	30	2.8	30	78	10	100	54	7	15	22	1.65
12175068--12175104	19	1.9	19	88	0	56	13	27	35	24	1.93
12175086--12175136	23	2.3	23	89	3	77	21	19	37	21	1.95
12184738--12184794	31	1.9	29	82	10	71	49	3	10	36	1.55
12188643--12188756	59	1.9	60	90	1	185	34	26	3	35	1.74
12188609--12188773	59	2.8	59	77	7	181	31	25	5	37	1.79
12188647--12188787	60	2.4	60	83	3	151	32	24	4	37	1.77
12188924--12189095	60	2.9	60	80	10	183	38	7	25	28	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12190448--12190555	28	3.8	29	77	12	118	40	0	0	57	1.11
12191710--12191764	28	2.0	28	96	0	101	21	25	38	14	1.92
12192150--12192308	64	2.5	64	88	6	225	32	22	17	27	1.97
12211043--12211137	21	4.6	21	80	13	99	31	24	22	22	1.98
12211084--12211156	20	3.6	20	79	17	96	35	19	21	23	1.96
12211063--12211219	41	3.8	41	83	9	169	29	20	23	26	1.99
12211146--12211248	21	4.9	21	85	4	145	25	22	24	28	1.99
12211105--12211245	42	3.4	42	84	8	173	26	21	24	27	1.99
12211873--12211902	6	5.0	6	95	0	51	0	16	63	20	1.31
12212024--12212160	21	6.6	21	77	9	138	29	22	21	25	1.99
12212021--12212140	41	2.9	41	80	6	109	32	20	21	25	1.98
12211999--12212160	42	3.9	42	77	11	145	31	21	21	25	1.98
12212169--12212243	21	3.6	21	92	0	123	21	21	26	30	1.98
12213963--12213995	15	2.2	15	100	0	66	21	33	12	33	1.90
12215006--12215075	18	3.9	18	96	0	131	22	34	22	20	1.97
12215011--12215079	9	7.5	10	66	18	51	24	31	24	18	1.98
12216442--12216536	21	4.6	21	80	13	99	31	24	22	22	1.98
12216483--12216555	20	3.6	20	79	17	96	35	19	21	23	1.96
12216545--12216644	21	4.8	21	87	2	139	23	21	27	29	1.99
12216462--12216562	41	2.5	41	93	3	168	33	19	22	23	1.97
12216737--12216790	6	9.5	6	95	2	78	31	51	16	0	1.45
12217443--12217571	21	6.2	21	75	10	113	34	24	18	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12217573--12217641	20	3.4	20	75	18	79	24	18	18	37	1.94
12217562--12217689	41	3.1	41	82	6	152	25	18	21	35	1.96
12217541--12217621	21	4.0	20	74	18	69	24	23	19	32	1.98
12217588--12217703	21	5.6	21	80	9	103	23	18	24	33	1.97
12219424--12219456	15	2.2	15	100	0	66	21	33	12	33	1.90
12224107--12224208	44	2.3	43	80	6	107	28	24	19	27	1.99
12223269--12225138	861	2.2	862	97	0	3553	31	15	17	35	1.92
12224989--12225070	23	3.6	22	70	8	67	23	24	23	29	1.99
12227761--12227883	46	2.7	46	94	0	210	34	18	16	30	1.93
12227798--12227868	22	3.1	22	64	28	58	35	15	14	35	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62