genome.fa.s190.2.7.7.80.10.50.1000.62.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000190.1 Hibiscus syriacus cultivar Beakdansim tig00000340_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14308945

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   

This is table  62  of  62  ( 7381 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14229080--14229124	23	2.0	23	86	8	65	37	17	6	37	1.76
14229167--14229211	23	2.0	23	90	0	72	37	20	6	35	1.79
14231899--14231967	22	3.0	22	81	8	68	37	0	4	57	1.18
14232467--14232508	21	2.0	22	85	4	59	52	2	0	45	1.13
14234578--14234617	21	1.9	21	89	0	62	22	37	25	15	1.93
14235503--14235558	23	2.4	23	81	0	76	17	21	23	37	1.94
14236006--14236051	2	23.0	2	95	0	83	52	0	0	47	1.00
14238941--14239014	23	3.2	23	84	3	96	31	27	21	20	1.98
14243467--14243537	18	3.9	18	92	0	124	29	32	21	16	1.95
14244182--14244228	19	2.5	19	82	0	67	25	29	12	31	1.93
14250351--14250421	18	3.9	18	88	0	106	29	32	18	19	1.96
14255968--14256036	18	3.8	18	90	0	111	28	31	20	18	1.96
14258247--14258372	32	3.9	32	90	0	207	34	19	18	27	1.95
14258619--14258649	10	3.1	10	100	0	62	29	19	9	41	1.83
14263893--14264329	219	2.0	218	99	0	865	34	16	23	25	1.96
14264878--14264903	2	13.0	2	100	0	52	50	0	0	50	1.00
14268622--14268680	3	19.0	3	82	6	64	59	0	0	40	0.97
14268974--14269634	106	6.0	109	91	7	1070	28	18	16	36	1.92
14268974--14269634	219	3.0	219	97	0	1241	28	18	16	36	1.92
14270348--14270599	92	2.7	92	100	0	504	35	22	15	26	1.94
14271749--14271821	1	73.0	1	72	0	56	0	13	0	86	0.58
14271751--14271820	5	13.8	5	80	14	72	0	14	0	85	0.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14271751--14271827	15	4.9	16	87	12	108	0	15	0	84	0.62
14271749--14271827	25	3.0	26	82	15	99	0	15	0	84	0.61
14271751--14271815	11	5.6	11	82	14	78	0	13	0	86	0.58
14284435--14284505	3	23.0	3	86	11	99	63	0	0	36	0.95
14285010--14285060	22	2.3	21	75	15	50	33	3	1	60	1.26
14287117--14287161	8	5.6	8	81	0	54	66	0	0	33	0.92
14287094--14287161	16	4.1	16	80	15	84	63	0	0	36	0.95
14287237--14287278	19	2.1	19	86	8	57	35	2	0	61	1.09
14289518--14289575	29	2.0	29	96	0	107	43	3	29	24	1.70
14290155--14290206	21	2.5	21	81	3	61	38	19	25	17	1.93
14290192--14290323	41	3.2	41	78	6	133	34	25	16	23	1.95
14290195--14290309	20	5.7	20	82	6	115	31	26	18	24	1.97
14290497--14290540	22	2.0	22	90	0	70	20	43	15	20	1.88
14292137--14292177	18	2.3	18	86	0	64	26	46	12	14	1.80
14292659--14292724	20	3.4	20	81	4	73	37	24	22	15	1.92
14292659--14292760	20	5.6	19	74	16	63	41	23	21	13	1.89
14292772--14292829	14	3.9	14	79	16	71	8	17	25	48	1.75
14292767--14292845	32	2.4	33	93	2	133	10	17	24	48	1.78
14292839--14292885	20	2.3	20	92	0	76	14	23	25	36	1.93
14294707--14294742	14	2.6	14	90	0	54	30	0	22	47	1.52
14294859--14294945	19	4.8	19	89	10	139	47	17	21	13	1.82
14294830--14294945	33	3.4	33	84	11	151	43	19	22	13	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14294964--14295021	20	2.9	20	92	0	98	17	22	22	37	1.93
14296077--14296130	24	2.2	24	90	0	81	24	16	20	38	1.92
14296304--14296328	12	2.1	12	100	0	50	72	0	28	0	0.86
14298612--14298738	33	3.8	33	84	8	177	44	18	21	15	1.87
14298612--14298742	19	7.7	19	64	23	76	44	19	21	15	1.87
14298617--14298745	66	2.0	66	93	0	222	44	18	20	16	1.87
14298747--14298826	32	2.5	33	87	4	117	12	23	18	45	1.84
14298933--14298969	14	2.6	14	91	0	65	45	24	0	29	1.53
14300342--14300417	21	3.6	21	64	7	55	22	23	30	23	1.99
14300353--14300443	42	2.2	42	83	0	119	24	17	36	21	1.95
14300662--14300844	90	2.0	89	89	6	278	46	19	12	21	1.83
14302547--14302646	37	2.9	33	86	7	119	45	22	21	12	1.84
14302521--14302651	19	7.1	19	74	16	114	46	19	20	13	1.83
14302647--14302718	19	3.7	19	81	3	81	11	19	23	45	1.82
14303273--14303326	20	2.7	20	97	0	99	25	18	24	31	1.97
14303233--14303347	61	1.9	61	81	3	142	21	20	23	34	1.96
14307903--14308021	57	2.1	57	93	3	204	27	14	22	35	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62

The End!