genome.fa.s190.2.7.7.80.10.50.1000.61.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000190.1 Hibiscus syriacus cultivar Beakdansim tig00000340_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14308945

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   

This is table  61  of  62  ( 7381 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14050634--14050676	22	2.0	22	95	0	77	53	11	0	34	1.37
14050636--14050684	22	2.2	22	85	3	62	57	12	0	30	1.36
14050624--14051075	54	8.4	54	79	14	395	52	11	0	35	1.43
14050656--14050757	32	3.5	32	70	27	109	52	8	0	37	1.39
14050714--14050765	18	3.1	18	68	21	58	55	11	0	32	1.36
14050690--14050738	22	2.2	22	85	3	62	53	10	2	34	1.47
14050639--14051030	134	2.9	133	95	1	703	52	12	0	34	1.44
14050822--14050864	22	2.0	22	100	0	86	51	13	0	34	1.42
14050827--14050976	80	1.9	80	95	0	273	52	14	0	32	1.42
14050878--14050952	22	3.2	22	75	14	69	54	14	0	30	1.41
14050624--14051075	188	2.4	187	87	6	614	52	11	0	35	1.43
14050956--14050998	22	2.0	22	100	0	86	51	13	0	34	1.42
14050958--14051006	22	2.2	22	88	3	71	55	14	0	30	1.40
14051010--14051052	22	2.0	22	95	0	77	51	11	0	37	1.39
14051012--14051060	22	2.2	22	85	3	62	55	12	0	32	1.37
14051055--14051172	15	7.5	15	81	13	139	52	2	0	44	1.14
14051001--14051157	67	2.3	67	86	5	210	52	5	0	42	1.25
14050921--14051142	54	4.3	50	88	7	149	51	8	0	40	1.33
14057984--14058014	2	15.5	2	100	0	62	48	0	0	51	1.00
14058260--14058316	28	2.0	28	100	0	114	42	7	15	35	1.75
14062536--14062795	4	65.0	4	100	0	520	25	0	25	50	1.50
14063951--14064030	35	2.3	35	86	0	115	42	23	0	33	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14063964--14064045	35	2.3	35	82	0	101	42	29	1	26	1.63
14064645--14064675	16	1.9	16	93	0	53	25	3	9	61	1.42
14064935--14065030	35	2.7	35	88	0	138	30	1	28	40	1.63
14067892--14067934	19	2.2	20	95	4	79	18	27	41	11	1.85
14068094--14068188	29	3.2	30	77	17	83	6	17	3	72	1.19
14068106--14068188	29	2.9	29	79	15	84	6	14	3	75	1.12
14068632--14068680	6	8.0	6	81	4	53	73	0	2	24	0.94
14068632--14068680	25	2.1	25	85	11	68	73	0	2	24	0.94
14068676--14068719	21	2.0	22	91	4	72	63	2	0	34	1.07
14068676--14068709	7	4.9	7	86	13	52	61	0	0	38	0.96
14068670--14068718	16	3.2	15	85	11	64	63	2	0	34	1.06
14068915--14069436	130	4.0	130	82	2	607	29	19	21	29	1.98
14068935--14069436	261	1.9	261	85	0	682	29	19	21	29	1.97
14069664--14069750	41	2.1	42	82	4	104	34	19	20	25	1.96
14069831--14069953	41	3.0	41	77	4	122	32	20	19	27	1.97
14069609--14069995	177	2.2	176	86	3	528	33	16	17	32	1.92
14070334--14070536	58	3.5	58	72	11	218	43	16	10	29	1.81
14070307--14070536	115	2.0	115	91	1	372	44	15	10	29	1.79
14070749--14070790	22	2.0	21	90	9	68	26	14	26	33	1.94
14072685--14072718	17	1.9	18	88	5	52	5	26	8	58	1.51
14081332--14081465	2	67.0	2	100	0	268	50	0	0	50	1.00
14082239--14082277	20	2.0	19	90	5	60	35	7	30	25	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14082430--14082503	36	2.1	36	85	10	98	47	2	0	50	1.15
14082843--14082885	19	2.3	19	91	0	68	32	41	4	20	1.73
14083865--14083922	28	2.1	28	100	0	116	48	13	20	17	1.81
14093456--14093498	18	2.1	22	84	16	58	76	2	0	20	0.89
14093496--14093572	28	2.6	28	82	10	84	51	6	1	40	1.36
14093526--14093583	28	2.0	29	90	6	91	46	6	3	43	1.47
14093555--14093689	40	3.6	36	82	8	144	42	8	3	45	1.51
14093555--14093689	38	3.5	37	83	3	153	42	8	3	45	1.51
14094073--14094112	21	1.9	21	100	0	80	50	5	17	27	1.67
14094073--14094117	21	2.3	20	88	11	67	48	6	15	28	1.70
14098197--14098230	2	17.0	2	100	0	68	50	0	0	50	1.00
14099668--14099774	41	2.6	41	84	1	133	23	25	19	31	1.98
14100025--14100093	20	3.5	20	91	0	111	36	20	15	27	1.93
14100678--14100746	22	3.1	22	87	0	102	39	15	14	30	1.88
14100835--14100944	57	1.9	56	89	5	168	30	23	9	36	1.86
14103210--14103287	24	3.2	24	98	0	147	30	19	3	46	1.68
14121337--14121381	23	2.0	23	86	0	63	40	6	15	37	1.74
14121366--14121629	135	2.0	135	94	1	467	43	12	12	32	1.79
14123950--14124335	200	1.9	200	91	2	632	31	15	13	38	1.87
14124365--14124691	158	2.1	158	86	4	453	29	17	14	38	1.89
14124811--14125432	179	3.4	179	82	7	655	33	15	12	38	1.85
14125054--14125513	198	2.3	199	85	4	588	33	13	13	39	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14126909--14126945	18	2.1	18	89	0	56	51	10	5	32	1.60
14126909--14126964	24	2.3	24	84	6	78	50	12	5	32	1.63
14128350--14128389	12	3.3	12	86	10	55	20	27	10	42	1.83
14129481--14129537	17	3.4	17	73	24	57	28	8	40	22	1.84
14129848--14133127	200	16.6	199	82	5	3605	31	16	14	37	1.88
14129848--14133127	399	8.3	398	84	4	3982	31	16	14	37	1.88
14131606--14131934	172	1.9	171	87	5	484	31	15	15	38	1.88
14140376--14140960	182	3.2	181	84	2	706	29	14	12	43	1.82
14143782--14143828	19	2.5	19	96	0	85	19	25	17	38	1.92
14143865--14143936	22	3.4	21	77	11	85	18	16	25	40	1.91
14143886--14143954	19	3.5	19	72	14	59	18	17	20	43	1.88
14143865--14143954	41	2.2	41	92	4	146	18	16	22	42	1.89
14143979--14144030	20	2.6	20	93	0	86	11	23	21	44	1.84
14143889--14144077	61	3.2	60	70	18	180	20	17	20	41	1.91
14144083--14144152	20	3.5	20	74	3	77	38	22	22	15	1.92
14144075--14144181	21	5.2	21	68	4	83	38	23	18	19	1.93
14144067--14144177	41	2.7	41	95	0	195	36	21	19	22	1.96
14149022--14149213	106	1.8	106	79	4	226	30	15	12	42	1.83
14149096--14149326	67	3.4	65	72	11	171	32	17	11	38	1.86
14150301--14150335	18	1.9	18	88	0	52	60	11	2	25	1.45
14151077--14151140	23	2.8	22	85	4	83	26	26	26	20	1.99
14151156--14151476	103	3.1	103	94	0	579	37	24	12	25	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14151956--14151993	20	1.9	20	88	0	58	10	31	34	23	1.89
14152021--14152063	21	2.0	21	90	0	68	16	23	27	32	1.96
14158086--14158141	23	2.4	23	90	0	85	26	26	26	19	1.99
14158165--14158481	103	3.1	103	94	0	571	37	23	12	25	1.91
14159030--14159072	21	2.0	21	90	0	68	16	23	27	32	1.96
14165281--14165312	3	10.7	3	100	0	64	65	0	0	34	0.93
14171658--14171716	22	2.7	22	79	10	66	23	23	27	25	2.00
14177514--14177558	23	2.0	23	83	12	58	48	13	24	13	1.78
14181629--14181672	2	22.0	2	100	0	88	50	0	0	50	1.00
14182119--14182150	2	16.0	2	100	0	64	50	0	0	50	1.00
14185635--14185708	9	7.7	9	78	11	67	13	25	28	32	1.94
14185635--14185689	10	5.6	10	79	8	60	10	25	29	34	1.90
14185635--14185708	19	3.8	19	82	8	78	13	25	28	32	1.94
14185711--14185737	14	1.9	14	100	0	54	22	51	22	3	1.63
14193022--14193068	24	2.0	24	83	8	60	25	48	17	8	1.74
14204811--14204866	24	2.4	23	82	11	69	28	21	5	44	1.74
14213430--14214284	182	4.7	182	85	3	1089	41	14	15	28	1.86
14213430--14214284	365	2.3	364	86	3	1152	41	14	15	28	1.86
14214870--14214971	39	2.6	39	100	0	204	47	3	14	34	1.63
14216288--14216338	24	2.2	24	86	6	70	49	0	3	47	1.20
14216725--14216768	21	2.1	21	95	0	79	40	11	34	13	1.81
14216802--14216868	33	2.0	33	97	0	125	29	0	46	23	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14217061--14217117	18	3.2	18	89	0	87	56	0	38	5	1.22
14218669--14218717	19	2.6	19	96	0	89	32	2	10	55	1.45
14219068--14220227	200	5.8	201	84	4	1384	37	14	16	31	1.89
14219071--14220175	397	2.8	402	85	3	1435	37	14	15	31	1.88
14221526--14221559	6	5.7	6	89	0	50	44	2	32	20	1.67
14223071--14224222	401	2.9	396	85	4	1476	38	13	16	31	1.87
14223071--14224240	201	5.8	201	82	5	1278	38	13	16	31	1.87
14228216--14228914	199	3.5	198	80	6	765	39	14	15	31	1.87
14228993--14229037	23	2.0	23	86	0	63	37	17	6	37	1.76
14228932--14229245	87	3.6	87	96	0	565	31	14	10	43	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62