genome.fa.s7923.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007923.1 Hibiscus syriacus cultivar Beakdansim tig00110328_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8415618

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   

This is table  3  of  40  ( 4704 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
511690--511741	20	2.5	21	81	3	61	21	21	17	40	1.91
512631--512674	22	2.0	22	82	8	54	27	15	2	54	1.53
513155--513198	21	2.1	21	82	0	52	52	2	4	40	1.34
522358--522393	17	2.1	18	89	5	56	44	5	5	44	1.50
539890--540071	95	1.9	95	89	2	285	31	17	18	31	1.94
541435--541515	36	2.2	37	84	2	101	30	19	12	37	1.89
541544--541754	36	6.0	37	78	10	151	27	19	11	40	1.87
541566--541811	101	2.4	101	90	0	384	27	20	10	41	1.85
541834--541978	31	4.4	36	74	17	113	42	15	8	33	1.77
541849--541977	31	4.1	31	75	8	118	44	13	8	32	1.74
543038--543618	288	2.0	290	94	2	1031	43	16	15	24	1.87
557815--557839	3	8.3	3	100	0	50	68	0	0	32	0.90
558604--558647	18	2.4	18	96	0	79	65	4	6	22	1.35
572140--572173	14	2.2	16	90	10	54	44	2	0	52	1.16
574879--574927	2	24.5	2	100	0	98	51	0	0	48	1.00
591716--591820	55	1.9	56	92	2	176	28	6	12	52	1.64
595643--595677	17	2.1	17	94	0	61	65	8	20	5	1.40
595829--595874	23	2.0	23	95	4	85	36	21	13	28	1.91
606075--606117	19	2.3	19	91	0	68	18	25	23	32	1.97
612720--613099	178	2.1	180	90	5	603	45	8	3	41	1.52
613149--613209	30	2.0	30	84	6	79	37	8	22	31	1.84
613215--613243	15	1.9	15	100	0	58	17	6	27	48	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
617407--617473	30	2.2	30	78	5	73	40	7	1	50	1.39
618852--618907	23	2.3	24	87	6	78	50	3	0	46	1.19
620743--620907	60	2.8	58	73	6	159	35	18	6	39	1.77
622400--622464	33	2.0	33	96	0	121	40	4	23	32	1.75
622407--622477	33	2.2	33	82	5	81	43	2	22	30	1.68
633640--633708	34	2.0	34	100	0	138	26	31	20	21	1.98
634730--635255	43	12.1	44	71	15	242	47	7	19	25	1.75
634730--634941	44	4.8	44	80	9	227	45	6	21	26	1.76
634955--635306	135	2.7	135	74	14	297	51	7	17	24	1.70
635253--635278	13	2.0	13	100	0	52	76	0	7	15	0.99
635926--635954	2	14.5	2	100	0	58	48	0	0	51	1.00
637330--637487	73	2.2	73	95	1	282	38	16	8	36	1.80
641653--641679	14	1.9	14	100	0	54	25	22	14	37	1.93
651526--651579	24	2.2	25	90	3	83	57	0	3	38	1.17
651566--651637	21	3.0	24	86	11	87	51	0	5	43	1.25
651579--651645	23	2.9	23	75	22	68	52	0	5	41	1.26
654537--654585	23	2.1	23	84	3	71	57	4	2	36	1.30
658935--658980	20	2.3	20	88	3	67	32	23	19	23	1.97
658971--659019	20	2.5	20	93	0	89	44	22	14	18	1.85
659039--659150	20	5.5	20	80	4	125	25	17	27	29	1.98
659039--659140	41	2.5	40	80	4	123	26	18	26	28	1.98
674373--674449	20	3.8	20	74	3	82	11	20	25	41	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
674397--674461	20	3.2	21	69	6	53	16	18	29	35	1.93
674498--674656	21	7.7	21	71	4	144	20	17	25	36	1.94
674519--674632	20	5.6	20	71	4	102	16	19	24	39	1.92
674494--674653	41	3.9	41	99	0	302	20	18	25	36	1.94
674497--674675	82	2.2	82	90	4	261	19	17	25	36	1.94
674765--674796	6	5.3	6	100	0	64	34	46	18	0	1.49
675126--675232	40	2.7	40	97	1	198	33	19	20	26	1.97
675317--675343	5	5.4	5	100	0	54	0	40	22	37	1.54
675344--675381	6	6.5	6	96	3	69	0	15	52	31	1.43
681221--681258	2	19.0	2	100	0	76	50	0	0	50	1.00
685776--685806	5	6.4	5	92	7	55	0	19	0	80	0.71
695081--695111	13	2.3	14	94	5	55	64	0	0	35	0.94
695502--695537	2	18.0	2	100	0	72	50	0	0	50	1.00
695596--695654	26	2.2	26	81	6	64	20	0	18	61	1.35
697669--697799	43	3.0	43	94	0	226	49	9	22	17	1.76
700105--700223	58	2.1	58	93	0	202	33	15	17	33	1.91
700788--700844	25	2.3	25	100	0	114	15	54	15	14	1.72
702309--702336	14	2.0	14	100	0	56	42	0	7	50	1.30
712806--712837	16	2.1	16	94	5	57	28	25	25	21	1.99
715701--715731	16	2.0	15	93	6	53	48	6	0	45	1.28
716780--716826	23	2.0	25	91	8	80	2	27	4	65	1.22
719774--719836	29	2.2	27	81	10	72	46	3	1	49	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
720076--720112	19	1.9	19	88	0	56	48	8	2	40	1.47
729879--729931	10	4.9	10	74	17	52	24	37	28	9	1.86
729882--729909	14	2.0	14	100	0	56	21	42	28	7	1.79
730026--730050	12	2.1	12	100	0	50	16	36	8	40	1.77
734213--734250	20	1.9	20	100	0	76	36	18	15	28	1.92
734218--734261	20	2.2	20	87	0	61	38	13	18	29	1.89
734547--734625	38	2.1	37	86	6	106	26	8	10	54	1.63
736360--736391	8	4.0	8	100	0	64	25	0	12	62	1.30
741231--741450	110	2.0	110	98	0	422	17	25	29	27	1.98
741731--741777	18	2.6	18	100	0	94	25	14	36	23	1.93
745126--745218	14	6.6	14	75	15	84	43	3	2	51	1.29
745136--745577	8	59.5	8	67	20	131	40	3	5	50	1.41
745178--745588	37	11.0	37	83	10	489	40	3	5	50	1.43
745287--745623	39	8.5	38	82	13	353	40	3	6	50	1.44
745160--745482	23	13.7	23	71	19	88	40	3	5	49	1.45
745136--745619	14	36.9	13	68	20	237	40	3	5	50	1.43
745309--745603	76	3.7	80	82	12	310	40	3	6	50	1.44
748773--748857	34	2.5	34	96	0	152	35	24	24	15	1.94
751095--751160	28	2.3	29	84	7	82	54	0	4	40	1.21
758392--758462	23	2.9	25	78	16	60	39	2	0	57	1.13
761151--761239	45	2.0	45	100	0	178	19	20	29	31	1.97
762726--762793	31	2.3	30	80	9	79	36	10	16	36	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
764417--764501	20	4.2	20	77	3	71	35	28	12	23	1.92
764453--764509	21	2.8	20	86	7	78	33	26	14	26	1.94
764584--764623	20	2.0	20	100	0	80	25	15	20	40	1.90
764548--764700	77	2.0	77	97	0	288	27	15	20	37	1.92
764661--764741	20	4.1	20	100	0	162	24	16	19	39	1.91
771679--774879	639	5.0	639	97	0	6060	32	16	20	30	1.94
777667--777713	24	2.0	24	91	0	76	29	4	10	55	1.53
779186--779210	5	5.0	5	100	0	50	20	40	20	20	1.92
779196--779261	31	2.1	31	88	5	98	31	27	19	21	1.97
784158--784233	37	2.1	37	87	0	107	42	31	6	19	1.77
786743--786783	21	2.0	20	85	4	55	29	0	2	68	1.03
788645--789000	173	2.1	172	93	0	604	41	9	8	40	1.69
788983--789017	2	17.5	2	100	0	70	48	0	0	51	1.00
789675--789707	18	1.9	17	88	11	50	54	0	9	36	1.32
790629--791312	226	3.0	226	94	1	1156	35	15	14	34	1.88
791542--791581	16	2.4	18	80	16	50	30	12	5	52	1.60
803400--803654	45	5.7	44	82	7	259	29	20	6	43	1.77
803400--803654	90	2.9	89	83	6	286	29	20	6	43	1.77
803757--803879	40	3.1	40	97	0	228	31	26	17	24	1.97
815439--815479	20	2.0	20	100	0	82	14	24	14	46	1.82
821502--821536	17	2.1	17	100	0	70	65	0	0	34	0.93
821588--821636	23	2.1	24	85	11	66	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
822414--822446	2	16.5	2	100	0	66	51	0	0	48	1.00
823206--823319	21	5.4	21	72	19	94	39	21	17	21	1.92
823198--823338	42	3.3	42	89	1	219	37	22	17	22	1.94
823231--823365	21	6.4	21	75	13	116	35	23	19	21	1.96
826446--826497	6	8.5	6	87	4	68	17	59	3	19	1.52
826446--826497	19	2.8	18	82	5	68	17	59	3	19	1.52
826446--826493	25	1.9	25	91	0	78	16	58	4	20	1.55
826711--826750	13	3.0	13	82	7	53	37	2	0	60	1.11
828205--828579	183	2.0	183	99	0	741	19	16	30	33	1.94
834695--834755	32	1.9	31	83	12	79	50	0	3	45	1.17

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40