genome.fa.s7923.2.7.7.80.10.50.1000.37.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007923.1 Hibiscus syriacus cultivar Beakdansim tig00110328_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8415618

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   

This is table  37  of  40  ( 4704 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7779312--7779561	20	12.5	20	83	5	247	37	24	18	19	1.94
7781012--7781156	33	4.2	32	72	19	132	46	17	22	13	1.83
7781026--7781180	19	8.7	19	82	13	213	45	17	21	15	1.85
7781012--7781174	52	3.1	52	99	0	317	46	17	22	14	1.84
7781026--7781180	71	2.2	71	86	6	208	45	17	21	15	1.85
7781170--7781286	53	2.2	53	98	1	227	13	23	17	44	1.85
7781189--7781286	19	5.4	19	84	13	143	14	22	17	45	1.84
7781393--7781429	14	2.6	14	91	0	65	45	21	0	32	1.52
7783354--7783488	19	7.6	19	75	16	110	45	25	18	9	1.80
7783410--7783466	14	3.7	14	72	20	51	45	28	19	7	1.76
7783391--7783483	33	2.8	33	91	0	159	47	24	19	8	1.77
7783354--7783488	52	2.5	54	77	18	149	45	25	18	9	1.80
7783484--7783598	19	6.3	19	81	10	141	8	16	28	46	1.77
7783646--7784114	93	5.1	93	99	0	922	46	19	12	21	1.83
7785815--7785904	14	5.7	14	72	23	72	43	23	24	8	1.82
7785807--7785921	33	3.5	33	97	0	221	46	20	23	9	1.80
7785829--7785926	19	5.7	19	71	22	90	43	22	23	10	1.83
7785938--7785994	14	3.7	14	75	20	60	8	24	22	43	1.81
7785922--7786002	33	2.5	33	95	0	144	8	22	22	46	1.78
7785979--7786054	21	3.7	21	80	3	100	13	25	15	46	1.82
7785978--7786055	41	1.9	41	94	0	138	14	25	15	44	1.84
7785945--7786054	21	5.8	20	71	17	99	12	24	17	45	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7786353--7786407	22	2.5	22	81	0	74	20	16	40	23	1.91
7786554--7786747	20	9.6	20	80	5	203	19	19	25	35	1.95
7786554--7786747	60	3.2	60	82	0	235	19	19	25	35	1.95
7786734--7786816	21	4.0	21	73	6	78	25	16	24	33	1.96
7786714--7786812	42	2.4	43	77	11	100	21	18	23	37	1.94
7786977--7787056	24	3.4	24	71	22	71	71	2	7	18	1.21
7787120--7787161	17	2.4	18	84	7	52	71	0	2	26	0.98
7787121--7787191	22	3.3	22	73	15	60	66	0	4	29	1.11
7787366--7787390	2	12.5	2	100	0	50	52	0	0	48	1.00
7787425--7787471	23	2.0	23	84	15	62	70	0	2	27	0.99
7787884--7787985	37	2.8	37	89	0	141	30	14	14	40	1.86
7788731--7789907	106	11.1	106	92	0	1784	22	18	24	34	1.96
7790853--7790907	22	2.5	22	90	0	92	25	10	25	38	1.88
7791527--7791574	14	3.4	14	83	11	62	0	12	6	81	0.87
7794955--7794993	20	2.0	21	90	10	64	69	0	23	7	1.14
7796296--7796336	13	3.2	13	80	16	50	70	0	2	26	0.99
7796538--7796570	2	16.5	2	93	0	57	48	0	3	48	1.17
7796641--7796675	2	17.5	2	100	0	70	51	0	0	48	1.00
7797079--7797163	37	2.3	37	85	0	107	29	11	15	43	1.82
7802377--7802429	23	2.2	24	90	6	81	30	24	22	22	1.99
7803025--7803059	2	17.5	2	100	0	70	51	0	0	48	1.00
7807378--7807442	23	2.8	23	83	0	85	27	24	29	18	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7808037--7808064	2	14.0	2	100	0	56	50	0	0	50	1.00
7811913--7811969	20	2.8	20	100	0	114	35	19	15	29	1.93
7814739--7814800	31	2.0	31	93	0	106	38	17	8	35	1.80
7824078--7824122	22	2.0	21	83	12	54	40	4	0	55	1.20
7825948--7825999	20	2.6	20	93	0	95	38	15	21	25	1.92
7825988--7826054	20	3.3	20	95	0	116	25	26	20	26	1.99
7825971--7826054	40	2.1	40	84	4	107	28	23	21	26	1.99
7826876--7826929	24	2.2	24	90	0	81	20	18	18	42	1.89
7827129--7827155	14	1.9	14	100	0	54	44	29	18	7	1.77
7829711--7829832	31	4.0	30	89	7	185	36	22	19	22	1.96
7829711--7829832	60	2.0	61	90	4	194	36	22	19	22	1.96
7830692--7830736	21	2.1	21	87	0	63	15	24	28	31	1.96
7833787--7833909	31	4.0	31	91	2	194	36	21	20	21	1.95
7834770--7834814	21	2.1	21	87	0	63	15	24	28	31	1.96
7835695--7835727	17	1.9	17	93	0	57	51	27	3	18	1.60
7835787--7836056	140	1.9	140	98	0	522	28	12	15	42	1.84
7836027--7836246	20	11.6	20	75	11	196	33	21	19	26	1.97
7836236--7836293	20	2.9	20	84	0	80	12	17	25	44	1.83
7836392--7836453	14	4.3	14	77	6	61	46	14	0	38	1.45
7838486--7838553	20	3.4	20	87	0	100	36	25	20	17	1.94
7838596--7838643	20	2.4	20	92	0	78	18	20	27	33	1.96
7838834--7838880	19	2.4	20	89	3	69	34	27	19	19	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7838923--7838990	20	3.4	20	93	0	109	17	19	26	36	1.94
7838395--7839139	348	2.2	344	88	5	1092	34	18	17	29	1.94
7840893--7840979	20	4.4	20	86	4	115	49	22	16	11	1.77
7841563--7841648	20	4.3	20	92	0	136	24	22	25	27	1.99
7841563--7841710	20	7.3	20	79	6	118	29	20	22	28	1.98
7850966--7851042	24	3.2	25	85	7	70	9	14	24	51	1.70
7850975--7851054	14	6.3	14	69	24	61	8	13	22	55	1.66
7850952--7851061	48	2.3	48	83	9	127	10	12	21	54	1.68
7850996--7851061	10	5.8	10	71	25	51	10	12	19	57	1.63
7850975--7851054	38	2.1	38	86	4	108	8	13	22	55	1.66
7850976--7851084	24	4.5	24	88	4	141	11	11	19	56	1.65
7851824--7851852	11	2.6	11	100	0	58	24	20	27	27	1.99
7852083--7852149	16	4.3	16	83	3	75	11	11	20	55	1.68
7852080--7852141	32	1.9	32	90	0	97	11	14	24	50	1.75
7852211--7852241	16	1.9	16	100	0	62	6	12	22	58	1.58
7861295--7861680	41	9.4	41	84	3	319	26	17	20	35	1.95
7861295--7861658	166	2.2	164	84	2	451	27	18	19	34	1.95
7861295--7861680	82	4.7	82	83	4	411	26	17	20	35	1.95
7863946--7864034	36	2.5	36	90	1	135	29	14	16	39	1.89
7864896--7864954	21	2.8	21	84	0	73	18	5	20	55	1.61
7865860--7865932	30	2.4	30	95	0	128	30	24	20	24	1.99
7865918--7866045	31	4.1	31	76	6	132	34	21	17	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7868229--7868362	43	3.1	43	92	1	225	26	23	22	27	1.99
7868559--7868613	2	28.0	2	96	3	103	50	0	0	49	1.00
7868873--7868907	2	18.0	2	94	5	63	48	0	0	51	1.00
7868578--7869171	293	2.0	295	99	0	1165	31	18	19	30	1.96
7869236--7869616	193	2.0	194	93	0	656	26	23	24	25	2.00
7870309--7870482	31	5.6	31	94	0	294	40	21	18	19	1.92
7873816--7873840	11	2.3	11	100	0	50	84	0	0	16	0.63
7874235--7874260	13	2.0	13	100	0	52	38	0	7	53	1.30
7874397--7874464	30	2.2	31	84	7	86	39	16	16	27	1.89
7874545--7874601	27	2.1	27	93	0	96	43	14	5	36	1.67
7876899--7876924	12	2.2	12	100	0	52	30	19	15	34	1.93
7883293--7883338	17	2.6	17	82	3	65	76	2	0	21	0.90
7884088--7884141	15	3.4	16	76	14	58	33	0	1	64	1.04
7884093--7884165	32	2.3	33	84	9	91	36	0	2	60	1.11
7895623--7895661	20	2.0	20	89	0	60	38	20	15	25	1.92
7895672--7895851	20	8.9	20	75	11	154	38	23	17	20	1.92
7895615--7895852	80	3.0	79	82	6	266	39	23	16	20	1.92
7895673--7895853	60	3.0	60	76	11	190	38	23	17	20	1.93
7895983--7896037	22	2.5	22	93	0	92	21	41	16	20	1.90
7896363--7896429	20	3.7	20	71	22	65	49	25	16	8	1.74
7896378--7896411	14	2.4	14	85	0	50	50	26	14	8	1.72
7896430--7896471	20	2.1	20	86	0	57	14	19	21	45	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7898630--7898682	21	2.5	21	75	0	61	22	35	18	22	1.95
7900030--7900206	66	2.6	66	86	8	243	28	2	16	52	1.56
7900104--7900149	14	3.4	14	76	8	51	26	0	17	56	1.41
7900260--7900374	54	2.1	54	85	0	158	41	20	16	21	1.90
7902717--7902770	24	2.2	24	93	0	90	40	20	18	20	1.91
7903768--7903831	20	3.2	19	78	10	65	21	17	25	35	1.95
7907177--7907487	80	3.8	80	88	2	435	32	25	21	20	1.98
7911410--7911833	33	12.3	33	70	19	253	15	8	33	43	1.76
7911524--7911842	137	2.3	136	80	5	376	13	8	32	44	1.74
7911524--7911866	93	3.4	105	82	10	375	13	9	33	44	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40