genome.fa.s7923.2.7.7.80.10.50.1000.32.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007923.1 Hibiscus syriacus cultivar Beakdansim tig00110328_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8415618

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   

This is table  32  of  40  ( 4704 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6686461--6686552	48	1.9	48	84	4	123	42	6	2	48	1.41
6686461--6686552	24	3.8	24	82	5	105	42	6	2	48	1.41
6686543--6686587	21	2.1	22	84	12	58	51	6	2	40	1.41
6686534--6686642	26	4.3	26	72	20	79	47	11	1	38	1.51
6686594--6686625	16	2.0	16	100	0	64	43	18	0	37	1.51
6686619--6686647	15	1.9	15	100	0	58	55	10	0	34	1.34
6687691--6687765	39	1.9	39	94	0	132	30	6	22	40	1.80
6695391--6695538	72	2.1	72	88	0	215	37	13	21	27	1.91
6696551--6696587	20	1.9	19	89	10	58	45	5	24	24	1.74
6697328--6697386	4	14.8	4	85	0	82	22	1	27	49	1.59
6699509--6699534	9	2.9	9	100	0	52	57	19	11	11	1.63
6701582--6701606	11	2.3	11	100	0	50	20	0	0	80	0.72
6707362--6708170	99	8.0	99	86	6	1079	34	25	18	21	1.96
6707360--6708227	106	8.5	102	85	7	1131	34	25	18	21	1.96
6707360--6708227	205	4.3	205	91	0	1332	34	25	18	21	1.96
6708693--6708760	33	2.1	33	91	0	109	23	22	14	39	1.91
6709327--6709385	2	29.5	2	100	0	118	49	0	0	50	1.00
6710706--6710734	13	2.1	14	93	6	51	31	0	0	68	0.89
6710924--6710976	26	2.0	26	89	7	81	11	11	5	71	1.29
6711100--6711166	24	2.8	22	73	22	64	11	7	5	74	1.20
6721457--6721487	15	2.1	15	100	0	62	48	6	12	32	1.67
6729501--6729547	23	2.0	24	87	4	69	65	2	0	31	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6729514--6729600	11	7.8	11	69	21	56	64	3	0	32	1.10
6729514--6729612	22	4.4	22	72	21	64	64	4	0	31	1.12
6730429--6730489	11	5.7	10	75	17	52	0	14	4	80	0.87
6730429--6730481	23	2.5	22	88	11	83	0	15	3	81	0.83
6730435--6730487	16	3.3	15	78	17	52	0	13	5	81	0.86
6730916--6730992	3	26.3	3	79	10	88	58	0	0	41	0.98
6730904--6730996	15	7.0	14	75	23	94	56	0	0	43	0.99
6730906--6730969	9	6.7	9	76	16	58	57	0	0	42	0.98
6730904--6730989	12	6.8	12	76	17	77	56	0	0	43	0.99
6731146--6732087	76	12.4	76	98	0	1776	34	21	22	21	1.97
6733157--6733312	54	2.9	54	92	0	258	23	23	16	37	1.93
6734190--6734363	74	2.3	74	80	4	181	31	20	15	32	1.94
6735303--6735525	114	2.0	114	88	0	329	31	19	14	34	1.92
6748257--6748303	23	2.0	24	87	4	69	65	2	0	31	1.04
6748270--6748356	11	7.8	11	69	21	56	64	3	0	32	1.10
6748270--6748368	22	4.4	22	72	21	64	64	4	0	31	1.12
6748366--6748417	26	2.0	26	85	7	70	53	3	11	30	1.54
6749218--6749282	16	4.3	15	75	21	64	0	13	3	83	0.77
6749218--6749274	22	2.7	21	87	12	82	0	14	3	82	0.80
6749218--6749288	27	2.7	27	79	18	78	0	12	4	83	0.79
6749218--6749290	11	6.7	10	77	20	67	0	13	4	82	0.81
6749219--6749287	22	3.0	22	78	8	75	0	13	4	82	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6749715--6749789	3	25.3	3	76	12	75	57	0	0	42	0.98
6749705--6749768	9	6.7	9	76	16	58	57	0	0	42	0.98
6749715--6749789	22	3.4	23	80	15	88	57	0	0	42	0.98
6749703--6749789	40	2.1	43	85	10	119	56	0	0	43	0.99
6749761--6749791	16	1.9	16	100	0	62	51	0	0	48	1.00
6751686--6751790	35	3.0	35	92	2	176	44	19	6	29	1.75
6756278--6756338	21	3.2	21	65	29	64	42	21	4	31	1.74
6756252--6756343	35	2.6	35	94	1	157	45	18	4	31	1.69
6761174--6761244	23	3.1	23	85	0	97	28	12	16	42	1.85
6763255--6763296	21	2.0	21	86	9	59	54	11	2	30	1.49
6766303--6766355	3	17.3	3	81	11	63	64	1	0	33	1.05
6766605--6766887	51	5.4	51	82	8	327	28	25	14	31	1.94
6766605--6767016	55	7.7	54	81	8	389	29	24	14	32	1.94
6781207--6781256	3	16.3	3	80	12	57	64	2	0	34	1.05
6781722--6781801	23	3.5	24	73	21	75	47	1	0	51	1.08
6782001--6782062	20	2.9	21	79	13	56	46	1	1	50	1.20
6782236--6782297	19	3.9	15	75	20	54	58	0	0	41	0.98
6783173--6783402	96	2.3	101	81	11	287	49	14	10	25	1.75
6783173--6783411	51	4.8	51	80	12	266	48	14	11	25	1.76
6783989--6784104	20	5.8	20	82	2	135	41	23	16	18	1.90
6784864--6784897	12	2.8	12	90	0	50	55	29	0	14	1.40
6785017--6785076	24	2.5	24	78	10	77	25	16	18	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6787693--6787768	20	3.8	20	91	0	125	19	21	23	35	1.96
6787693--6787768	40	1.9	40	100	0	152	19	21	23	35	1.96
6787698--6787793	40	2.6	38	85	9	119	18	19	22	38	1.93
6787859--6787910	25	2.1	25	92	0	86	30	7	19	42	1.79
6788295--6788340	12	3.8	12	79	0	56	36	8	4	50	1.53
6788287--6788339	24	2.2	24	89	0	79	37	5	9	47	1.60
6788642--6788728	39	2.2	39	97	0	165	47	20	14	17	1.83
6788942--6788980	20	2.0	20	94	0	69	38	23	20	17	1.93
6789098--6789137	14	2.9	14	100	0	80	45	20	0	35	1.51
6790544--6790662	21	5.7	21	77	6	107	21	19	36	22	1.95
6790544--6790662	42	2.8	42	78	7	125	21	19	36	22	1.95
6790806--6790855	4	12.5	4	82	0	64	68	4	2	26	1.18
6792813--6792866	20	2.7	19	83	8	72	46	22	16	14	1.84
6793153--6793203	22	2.3	22	96	0	93	21	13	43	21	1.87
6793331--6793515	20	9.2	20	79	8	198	23	17	24	35	1.95
6797263--6797300	2	19.0	2	89	10	60	47	0	2	50	1.15
6799967--6800073	50	2.2	49	89	3	169	42	9	21	27	1.83
6803523--6803570	3	16.0	3	100	0	96	0	66	0	33	0.92
6803627--6803705	3	26.3	3	97	0	149	0	31	0	68	0.90
6805385--6805417	15	2.1	16	94	5	59	51	18	24	6	1.68
6809684--6809785	36	2.9	36	89	1	152	29	14	12	43	1.83
6812645--6812692	23	2.1	23	84	0	60	35	10	18	35	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6813122--6813180	23	2.6	23	88	0	82	40	16	5	37	1.71
6812759--6813826	434	2.5	434	97	0	2029	38	12	7	41	1.71
6813552--6813614	23	2.7	23	92	0	99	38	20	4	36	1.74
6814037--6814122	39	2.2	39	93	0	145	18	13	18	48	1.80
6814379--6814415	18	2.1	18	89	0	56	51	10	5	32	1.60
6814836--6814897	23	2.4	26	74	20	67	40	16	4	38	1.69
6814845--6814898	23	2.3	23	93	0	90	40	16	5	37	1.72
6817562--6818501	199	4.7	198	98	0	1785	32	16	15	35	1.90
6818626--6818674	19	2.6	19	90	0	71	59	8	2	30	1.38
6820470--6820535	33	2.0	33	90	0	105	22	48	0	28	1.51
6820569--6820633	21	3.1	21	80	6	69	15	29	15	40	1.88
6822861--6822903	20	2.3	18	85	14	61	20	16	11	51	1.75
6822866--6822912	20	2.4	19	82	10	67	19	17	10	53	1.72
6823034--6823078	20	2.3	19	88	11	72	17	15	11	55	1.68
6826408--6826536	64	2.0	64	96	0	240	35	13	12	37	1.83
6829123--6829186	14	4.1	15	76	11	58	42	0	0	57	0.98
6829115--6829202	33	2.7	33	84	10	110	42	0	0	57	0.98
6834825--6834859	14	2.4	15	95	4	63	25	17	0	57	1.40
6834965--6835005	16	2.6	16	100	0	82	17	19	0	63	1.31
6835399--6835437	14	2.6	15	88	8	53	35	30	2	30	1.71
6836626--6836677	27	1.9	27	84	7	70	67	5	1	25	1.23
6841432--6841484	20	2.7	20	96	0	97	35	24	13	26	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6841374--6841610	122	1.9	122	84	6	320	33	20	18	27	1.96
6841510--6841605	20	4.8	20	83	5	104	37	17	20	23	1.94
6842128--6842176	20	2.5	20	96	0	89	38	24	20	16	1.92
6842181--6842225	19	2.4	19	88	0	63	51	24	15	8	1.72
6842221--6842319	19	5.1	19	83	11	112	14	22	20	43	1.87
6844470--6844530	21	3.0	20	73	7	59	22	36	19	21	1.95
6846034--6846090	14	3.7	14	75	20	60	43	22	24	8	1.81
6846016--6846105	33	2.7	33	94	0	153	43	21	22	13	1.87
6846016--6846076	19	3.5	19	74	21	69	44	21	22	11	1.84
6846101--6846231	19	7.7	19	66	26	96	16	22	18	41	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40