genome.fa.s7923.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007923.1 Hibiscus syriacus cultivar Beakdansim tig00110328_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8415618

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   

This is table  8  of  40  ( 4704 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1673286--1673408	29	4.2	29	71	10	97	28	23	8	39	1.85
1673306--1673434	60	2.2	60	98	0	249	27	26	10	36	1.88
1673444--1673521	31	2.5	30	85	6	102	35	12	23	28	1.91
1676234--1676282	19	2.5	19	86	3	62	69	0	8	22	1.14
1676311--1676352	17	2.4	18	92	4	68	71	0	7	21	1.09
1676944--1677130	76	2.6	74	82	8	231	56	12	1	29	1.44
1676944--1677168	76	3.1	75	76	9	221	56	11	1	30	1.45
1678483--1678555	23	3.2	23	96	0	128	28	12	24	34	1.92
1694211--1694243	8	4.0	8	92	7	57	24	0	0	75	0.80
1694209--1694243	17	2.1	17	100	0	70	25	0	0	74	0.82
1695580--1695613	17	2.1	16	88	5	50	14	8	0	76	1.01
1701949--1701991	20	2.1	21	87	8	63	18	13	0	67	1.23
1701948--1701997	20	2.5	20	75	15	59	18	18	0	64	1.30
1705575--1705608	17	2.1	16	88	5	50	14	8	0	76	1.01
1706016--1706054	16	2.5	15	88	8	60	15	7	0	76	0.99
1715639--1715677	20	2.0	20	100	0	78	17	25	30	25	1.97
1718366--1718420	22	2.5	22	100	0	110	23	20	38	18	1.93
1721701--1721740	21	1.9	21	90	10	64	32	7	5	55	1.50
1723807--1723851	24	1.9	23	86	13	65	37	6	13	42	1.70
1732084--1732123	7	5.7	7	85	8	55	0	0	12	87	0.54
1732084--1732123	15	2.7	15	92	3	64	0	0	12	87	0.54
1732087--1732124	8	4.9	8	90	6	60	0	0	13	86	0.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1732185--1732236	18	2.8	19	77	11	54	25	1	1	71	1.07
1732194--1732278	25	3.3	25	80	11	73	17	3	4	74	1.14
1732272--1732311	3	13.7	3	94	5	73	30	0	0	70	0.88
1733918--1734046	18	6.9	18	82	6	159	31	29	20	19	1.97
1733918--1734046	56	2.3	56	100	0	258	31	29	20	19	1.97
1733918--1734046	38	3.5	36	84	4	159	31	29	20	19	1.97
1740821--1740873	18	2.8	20	74	11	56	33	26	20	18	1.96
1740818--1740879	20	3.2	20	72	9	65	32	30	17	19	1.95
1745207--1745409	99	2.1	99	87	2	293	34	16	17	31	1.92
1746759--1747064	155	2.0	154	89	1	461	37	21	12	27	1.90
1747180--1747493	86	3.8	85	85	9	414	36	21	17	24	1.95
1747180--1747493	165	1.9	165	88	5	470	36	21	17	24	1.95
1748095--1748144	2	25.0	2	92	8	84	50	2	0	48	1.12
1750228--1750341	32	3.6	32	88	5	162	28	15	22	33	1.95
1751687--1751721	11	3.1	11	95	4	61	8	0	8	82	0.83
1751789--1751858	27	2.7	25	82	10	86	18	2	2	75	1.05
1751844--1751928	38	2.3	35	74	9	89	18	7	5	68	1.34
1757113--1757157	24	1.9	23	86	4	63	28	42	8	20	1.82
1764050--1764111	26	2.4	26	94	0	115	29	20	14	35	1.93
1768285--1768361	31	2.4	32	84	2	102	27	29	27	15	1.96
1769667--1769726	26	2.3	26	100	0	120	30	21	16	31	1.96
1772590--1772937	174	2.0	173	96	3	646	31	19	15	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1775109--1775166	26	2.2	26	100	0	116	31	20	17	31	1.96
1780770--1780827	26	2.2	26	100	0	116	31	20	17	31	1.96
1783613--1783649	19	1.9	19	88	0	56	35	29	13	21	1.92
1783722--1783768	21	2.3	21	85	7	62	29	19	21	29	1.97
1783761--1783988	21	10.9	21	77	12	195	24	25	20	29	1.99
1783722--1783914	104	1.9	103	94	1	341	25	24	21	29	1.99
1783722--1783936	104	2.1	103	89	2	324	25	24	20	29	1.99
1784136--1784181	22	2.1	22	84	8	58	60	8	8	21	1.53
1784442--1784493	16	3.1	17	78	13	63	36	0	3	59	1.16
1784650--1784961	21	15.0	21	80	5	231	31	17	24	26	1.97
1784643--1784869	63	3.6	63	84	2	271	32	15	23	27	1.95
1784828--1784999	82	2.1	82	92	0	281	29	22	22	26	1.99
1785061--1785098	19	1.9	19	89	5	58	23	18	28	28	1.98
1785070--1785108	19	2.1	19	90	0	60	25	15	25	33	1.95
1786470--1786497	14	2.0	14	100	0	56	14	0	42	42	1.45
1794758--1794790	15	2.2	15	100	0	66	12	33	6	48	1.65
1797778--1797830	21	2.5	21	81	6	72	20	26	18	33	1.96
1797857--1797969	41	2.8	41	85	4	122	32	25	17	23	1.97
1797860--1797986	20	6.3	20	80	8	114	30	25	18	25	1.98
1797860--1797986	40	3.2	40	81	7	132	30	25	18	25	1.98
1798521--1798627	40	3.0	34	73	15	97	38	22	25	14	1.91
1798540--1798615	20	3.8	20	94	0	125	39	22	23	14	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1798653--1798698	19	2.4	19	96	0	83	17	17	17	47	1.83
1800285--1800377	42	2.2	42	88	0	141	20	15	43	21	1.88
1800313--1800373	21	2.9	21	73	9	70	21	13	42	22	1.87
1800715--1800767	20	2.7	20	87	0	70	33	28	13	24	1.93
1800721--1800826	20	5.4	19	84	5	95	38	23	20	16	1.93
1800815--1800871	14	3.7	14	75	20	60	50	22	15	10	1.74
1800780--1800857	19	4.4	19	81	15	112	47	19	19	14	1.82
1800780--1800895	52	2.2	52	83	8	139	45	21	18	13	1.84
1800780--1800895	19	6.6	19	77	18	110	45	21	18	13	1.84
1800796--1800878	33	2.5	33	100	0	166	49	20	18	12	1.79
1800885--1800951	19	3.8	19	75	18	81	11	19	20	47	1.81
1800907--1800965	14	3.9	14	76	20	64	10	16	23	49	1.77
1800890--1800981	33	2.8	33	94	0	157	11	16	21	50	1.77
1800975--1801020	20	2.3	20	88	0	65	15	21	26	36	1.93
1801561--1801609	18	2.7	18	93	0	89	14	12	44	28	1.81
1802484--1802596	20	5.7	20	88	0	172	27	17	27	27	1.98
1802484--1802634	40	3.8	40	88	2	205	25	16	26	31	1.96
1802464--1802659	40	4.8	41	82	5	141	23	17	25	33	1.96
1802675--1802720	21	2.2	20	88	11	74	39	19	28	13	1.89
1804097--1804149	21	2.4	21	84	12	63	56	1	7	33	1.38
1809960--1810012	21	2.5	21	81	0	61	20	26	16	35	1.94
1810002--1810115	20	5.7	20	72	8	97	41	17	17	23	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1810062--1810133	20	3.6	20	75	20	71	34	22	19	23	1.96
1810654--1810783	38	3.6	38	85	10	164	44	20	23	11	1.84
1810698--1810819	19	6.7	19	87	9	173	45	22	20	10	1.82
1810815--1811087	19	14.8	19	86	9	386	10	21	21	46	1.81
1812762--1813039	94	3.1	93	88	7	419	21	12	18	47	1.82
1813128--1813220	39	2.4	39	85	3	116	48	22	19	9	1.78
1813128--1813220	20	4.8	19	88	5	114	48	22	19	9	1.78
1813234--1813302	33	2.1	33	91	0	111	8	21	20	49	1.76
1813757--1813823	21	3.2	21	66	6	55	23	35	20	19	1.95
1815297--1815395	19	5.7	19	72	24	85	46	23	19	11	1.81
1815297--1815390	33	2.8	33	91	3	145	45	23	19	11	1.83
1815329--1815405	19	4.3	19	79	18	94	45	25	16	11	1.82
1815405--1815531	33	3.8	33	88	0	182	14	22	15	46	1.83
1815445--1815531	19	5.1	18	66	25	64	13	20	17	48	1.81
1815505--1815597	20	4.7	20	70	13	75	21	18	23	36	1.95
1817844--1817870	14	1.9	14	100	0	54	7	11	29	51	1.64
1817872--1817910	3	13.0	3	88	0	60	0	28	0	71	0.86
1817871--1817910	15	2.7	15	100	0	80	0	27	0	72	0.85
1818085--1818138	24	2.2	24	93	0	90	40	20	18	20	1.91
1818085--1818152	24	2.8	24	84	0	64	38	20	17	23	1.93
1819000--1819208	20	10.3	20	81	8	217	33	18	21	26	1.96
1819011--1819207	41	4.8	41	83	6	222	34	18	21	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1819156--1819220	20	3.2	20	72	20	55	33	18	24	23	1.96
1825250--1825313	28	2.3	27	78	10	65	48	4	14	32	1.64
1840078--1840214	70	2.0	70	88	5	206	27	8	18	44	1.80
1840660--1840693	2	17.5	2	93	6	61	50	0	0	50	1.00
1848411--1848462	20	2.6	20	84	0	59	32	17	19	30	1.95
1850025--1850102	23	3.3	23	83	1	93	33	21	19	25	1.97
1850109--1850326	103	2.1	103	94	0	382	35	23	14	26	1.93
1851699--1851758	20	2.9	21	80	7	77	18	25	23	33	1.97
1855779--1855894	38	3.1	36	82	7	133	46	2	8	42	1.48
1855835--1855908	36	2.0	35	84	7	94	48	0	6	44	1.29

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40