genome.fa.s7923.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007923.1 Hibiscus syriacus cultivar Beakdansim tig00110328_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8415618

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   

This is table  9  of  40  ( 4704 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1860037--1860378	184	1.9	184	91	2	571	33	18	21	26	1.96
1860997--1861075	38	2.1	38	86	11	110	50	7	5	36	1.53
1861094--1861172	36	2.1	37	88	4	115	48	1	6	44	1.36
1861164--1861254	39	2.4	37	85	3	119	46	5	6	41	1.53
1861269--1861310	6	6.7	6	84	10	57	21	11	0	66	1.23
1862357--1862382	13	2.0	13	100	0	52	15	7	0	76	0.99
1869589--1869621	2	17.0	2	93	6	59	48	0	0	51	1.00
1874022--1874095	37	2.0	37	100	0	148	27	16	27	29	1.97
1874963--1875000	19	2.0	19	94	0	67	42	10	18	28	1.83
1878197--1878332	41	3.3	41	69	20	113	29	16	21	32	1.95
1878193--1878380	82	2.3	82	84	3	236	31	18	19	30	1.95
1878256--1878434	82	2.2	82	79	3	191	32	19	18	29	1.96
1878246--1878436	41	4.6	41	70	10	104	32	18	18	30	1.95
1883213--1883287	38	2.0	37	84	5	98	50	2	0	46	1.15
1887794--1887844	22	2.3	22	89	0	75	17	43	17	21	1.88
1888245--1888276	14	2.3	14	94	0	55	6	21	21	50	1.71
1888235--1888368	33	3.8	34	73	12	110	14	17	22	46	1.83
1888299--1888345	20	2.3	20	88	0	67	19	17	25	38	1.92
1888313--1888368	20	2.8	20	91	0	85	10	16	23	50	1.76
1888332--1888375	20	2.2	20	91	0	70	11	13	20	54	1.69
1890278--1890346	20	3.5	20	87	0	93	36	24	20	18	1.95
1890418--1890456	19	2.0	20	85	5	53	12	15	17	53	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1890462--1890509	20	2.4	20	92	0	78	18	18	27	35	1.95
1890477--1890539	20	3.2	20	88	0	81	14	15	23	46	1.83
1891021--1891098	21	3.7	21	77	0	93	21	34	17	25	1.96
1891020--1891116	21	4.6	22	74	7	85	22	36	16	24	1.94
1891020--1891116	42	2.3	42	78	3	106	22	36	16	24	1.94
1892503--1892539	14	2.6	14	100	0	74	29	0	21	48	1.50
1892681--1892736	20	2.8	20	88	0	85	44	23	23	8	1.81
1892741--1892871	34	3.9	33	82	6	147	19	15	22	41	1.89
1892842--1892879	20	1.9	20	94	0	67	26	18	23	31	1.97
1892850--1893132	140	2.0	140	96	0	521	43	14	13	28	1.84
1893185--1893225	6	6.8	6	88	0	55	17	0	26	56	1.41
1893185--1893225	12	3.4	12	89	0	64	17	0	26	56	1.41
1893185--1893225	18	2.3	18	91	0	73	17	0	26	56	1.41
1895259--1895295	14	2.6	14	91	4	56	8	18	21	51	1.72
1896373--1896411	19	2.1	19	95	0	69	28	15	30	25	1.96
1897281--1897349	29	2.4	29	82	4	77	24	4	24	46	1.71
1899185--1899220	10	3.6	10	92	0	54	5	2	5	86	0.79
1899260--1899310	23	2.2	23	82	0	57	9	21	13	54	1.67
1899980--1900167	21	9.6	19	69	15	89	21	19	21	37	1.94
1899991--1900058	35	1.9	35	82	5	84	25	19	16	39	1.91
1899961--1900164	61	3.5	58	80	8	229	22	19	22	36	1.95
1900567--1900675	19	5.4	19	79	13	101	30	28	6	34	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1901623--1901752	58	2.2	58	82	9	156	33	11	16	38	1.84
1902817--1902857	20	2.0	20	100	0	82	41	0	9	48	1.36
1903540--1903583	22	2.0	22	86	4	61	27	29	22	20	1.99
1903570--1903732	74	2.2	74	87	2	229	28	28	20	23	1.99
1903694--1903731	19	2.0	19	100	0	76	21	31	21	26	1.98
1911416--1911459	22	2.0	22	86	4	61	27	29	22	20	1.99
1914276--1914303	11	2.5	11	100	0	56	75	14	0	10	1.06
1914564--1914777	109	2.0	110	82	2	261	45	11	17	25	1.82
1915577--1915777	111	1.8	111	91	2	332	26	19	12	41	1.87
1915857--1915910	22	2.6	21	81	16	60	29	9	3	57	1.47
1916004--1916089	28	2.8	31	74	15	79	17	4	3	74	1.13
1916023--1916085	16	3.9	16	80	12	65	19	1	1	77	0.93
1916041--1916090	21	2.2	24	89	10	79	18	0	0	82	0.68
1916011--1916089	11	7.7	11	74	16	64	17	2	2	77	1.00
1917454--1917502	3	16.7	3	79	12	57	36	0	2	61	1.08
1923844--1923893	2	25.0	2	95	0	91	48	0	2	50	1.12
1924090--1924152	22	2.9	22	81	9	67	73	3	17	6	1.18
1924101--1924195	32	2.7	34	80	15	113	72	3	16	7	1.20
1924139--1924214	11	6.8	11	72	19	68	76	1	17	5	1.04
1924124--1924190	32	2.1	32	97	0	125	71	2	19	5	1.20
1924139--1924214	6	12.5	6	72	22	61	76	1	17	5	1.04
1924173--1924219	24	2.0	24	91	0	76	76	2	14	6	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1925247--1925381	32	4.2	32	89	1	198	30	14	23	31	1.94
1925494--1925614	34	3.6	34	85	8	165	33	20	10	34	1.87
1925996--1926136	40	3.5	40	76	8	128	29	17	13	39	1.88
1926099--1926292	36	5.3	36	85	3	219	27	21	14	36	1.93
1925994--1926338	36	9.1	39	78	8	218	28	19	14	37	1.91
1926360--1926858	43	11.6	43	85	3	610	27	12	29	30	1.93
1926798--1926907	54	2.0	54	89	5	168	28	14	27	30	1.95
1927339--1927387	3	16.7	3	79	12	57	36	0	2	61	1.08
1928809--1928849	2	20.5	2	94	0	73	48	0	2	48	1.14
1931712--1931783	2	36.0	2	100	0	144	50	0	0	50	1.00
1931998--1932043	24	1.9	25	91	8	78	76	0	23	0	0.79
1931998--1932084	25	3.5	24	77	14	86	72	1	25	1	0.99
1933978--1934148	58	3.1	54	77	14	172	30	10	19	39	1.85
1934398--1934758	39	9.4	39	87	2	514	31	17	16	35	1.92
1934678--1934742	22	3.2	22	66	28	61	38	16	13	30	1.88
1934398--1934757	192	1.9	193	87	0	533	31	17	16	35	1.92
1934779--1934922	59	2.4	59	72	4	139	27	27	17	27	1.98
1936079--1936278	107	1.9	106	87	5	296	27	18	12	42	1.85
1936344--1936385	5	8.4	5	97	0	75	2	0	16	80	0.81
1936533--1936595	11	5.7	11	73	14	58	15	4	3	76	1.09
1936919--1936949	16	1.9	16	93	0	53	19	16	12	51	1.76
1938713--1938765	22	2.5	20	82	17	56	32	0	15	52	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1938808--1938902	49	2.0	47	89	4	145	50	13	7	28	1.68
1939809--1939864	10	5.6	10	73	0	58	14	28	32	25	1.94
1939819--1939875	5	11.4	5	76	0	60	17	31	28	22	1.97
1939807--1939874	20	3.4	20	100	0	136	14	30	29	25	1.95
1952517--1952576	3	19.3	3	89	3	84	40	0	0	60	0.97
1965394--1965459	23	3.0	22	80	13	73	80	0	16	3	0.84
1965426--1965460	15	2.3	16	85	14	56	85	0	14	0	0.59
1966836--1967174	93	3.6	92	91	2	534	26	16	20	35	1.94
1966835--1967218	93	4.1	93	89	3	533	28	16	20	34	1.94
1968005--1968675	113	6.0	113	86	5	846	37	15	17	29	1.90
1968888--1968966	3	26.3	3	92	5	133	36	0	0	63	0.95
1972724--1972770	23	2.1	23	88	4	69	51	8	17	23	1.72
1976442--1976473	15	2.1	16	94	5	57	50	18	25	6	1.70
1984206--1984245	10	3.8	11	81	18	50	52	0	0	47	1.00
1984305--1984347	17	2.5	17	77	7	52	69	2	6	20	1.23
1988755--1988812	23	2.5	23	75	13	57	63	1	1	32	1.14
1990264--1990328	6	10.8	6	98	0	112	50	0	29	20	1.48
1991084--1991383	108	2.8	108	81	4	318	40	10	14	35	1.79
1991431--1991528	51	1.9	51	95	0	178	37	5	13	43	1.66
1992075--1992130	23	2.4	23	81	0	58	41	10	14	33	1.80
1992195--1992266	23	3.1	23	85	0	81	31	13	15	38	1.87
1992025--1992333	121	2.6	122	85	3	410	35	13	11	39	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1992241--1992572	149	2.2	150	86	1	468	34	13	11	40	1.81
1992241--1992572	75	4.4	74	85	2	396	34	13	11	40	1.81
1992979--1993043	29	2.2	29	83	8	78	41	6	9	43	1.61
1997942--1998156	107	2.1	103	86	6	301	41	21	15	20	1.89
1999955--2000021	22	3.0	22	95	2	116	25	28	26	19	1.99
2001732--2001776	21	2.1	21	87	0	63	15	24	28	31	1.96
2003045--2003091	18	2.8	16	76	23	51	29	27	0	42	1.56
2003615--2003640	8	3.2	8	100	0	52	38	11	0	50	1.39
2004949--2005013	22	2.9	22	95	2	112	26	29	26	18	1.98
2006742--2006786	21	2.1	21	87	0	63	15	24	28	31	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40