genome.fa.s7923.2.7.7.80.10.50.1000.40.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007923.1 Hibiscus syriacus cultivar Beakdansim tig00110328_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8415618

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   

This is table  40  of  40  ( 4704 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8366265--8366300	15	2.4	15	85	0	54	25	2	0	72	0.98
8374744--8374836	30	3.1	30	93	1	152	20	21	26	31	1.98
8375538--8375580	21	2.0	21	82	8	52	32	4	11	51	1.59
8378958--8379006	13	3.6	13	81	8	62	57	14	2	26	1.48
8383736--8383773	3	12.3	3	94	5	67	68	0	0	31	0.90
8383859--8384056	36	5.5	34	72	15	139	42	9	5	43	1.58
8383838--8384074	38	6.4	36	75	13	189	43	8	5	42	1.57
8383962--8383986	12	2.1	12	100	0	50	44	8	8	40	1.63
8384775--8385686	84	10.9	83	83	3	1066	25	19	23	31	1.98
8384742--8385652	249	3.6	248	91	1	1338	25	19	23	31	1.98
8389040--8389084	19	2.4	19	92	3	74	66	8	13	11	1.44
8391968--8392005	3	12.3	3	94	5	67	68	0	0	31	0.90
8392075--8392288	38	5.8	35	74	16	136	42	8	5	42	1.59
8392070--8392288	72	3.0	72	81	8	237	43	9	5	42	1.59
8392070--8392288	36	5.9	36	75	14	189	43	9	5	42	1.59
8392194--8392218	12	2.1	12	100	0	50	44	8	8	40	1.63
8392115--8392318	36	5.5	37	74	14	122	43	7	3	45	1.50
8392115--8392357	38	6.5	37	76	11	196	44	7	4	44	1.52
8393176--8393222	12	4.1	12	86	10	53	19	12	19	48	1.80
8393209--8393249	19	2.2	19	90	0	64	29	14	14	41	1.86
8394303--8394510	76	2.8	77	86	5	282	20	23	31	25	1.98
8397075--8397137	21	2.9	21	83	9	74	17	25	36	20	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8400931--8400970	21	1.9	21	85	10	55	35	10	2	52	1.48
8402889--8403088	76	2.6	77	88	4	282	19	24	33	23	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40

The End!