genome.fa.s7923.2.7.7.80.10.50.1000.34.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007923.1 Hibiscus syriacus cultivar Beakdansim tig00110328_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8415618

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   

This is table  34  of  40  ( 4704 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7068817--7068917	42	2.4	41	80	3	112	31	21	21	24	1.98
7074946--7074981	6	6.0	6	100	0	72	50	16	16	16	1.79
7075674--7075763	47	1.9	46	82	8	110	34	22	13	30	1.92
7079340--7079404	30	2.2	30	88	2	96	1	6	30	61	1.29
7080607--7081100	195	2.5	194	98	0	961	43	13	7	35	1.72
7082140--7082218	16	5.2	15	76	14	58	65	2	6	25	1.29
7082130--7082218	44	2.1	44	81	12	105	65	4	5	24	1.34
7085723--7085771	23	2.1	23	85	14	66	42	0	4	53	1.20
7087400--7087465	23	2.9	23	79	0	78	46	18	9	25	1.78
7090018--7090052	2	17.5	2	100	0	70	48	0	0	51	1.00
7103673--7103697	6	4.2	6	100	0	50	0	0	32	68	0.90
7105643--7105757	20	5.7	20	85	6	169	33	27	19	20	1.96
7105605--7105758	40	3.8	40	81	7	177	36	26	18	18	1.94
7106137--7106207	33	2.2	33	94	0	124	11	23	16	47	1.79
7106287--7106360	21	3.5	20	80	8	94	47	17	20	14	1.83
7106348--7106404	14	3.7	14	70	20	51	43	21	24	10	1.83
7106341--7106420	33	2.4	33	93	0	133	47	21	21	10	1.79
7106416--7106479	18	3.7	18	76	18	73	10	23	21	43	1.84
7106438--7106493	14	3.7	14	78	17	67	8	25	23	42	1.82
7106421--7106542	32	3.5	33	85	13	156	10	24	18	45	1.81
7106478--7106542	21	3.1	21	82	4	96	10	26	15	47	1.78
7106477--7106540	20	3.2	20	82	4	92	12	25	15	46	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7106477--7106557	41	2.0	41	80	4	92	20	25	13	39	1.90
7108201--7108512	92	3.4	92	97	2	592	22	13	19	45	1.85
7108612--7108731	33	3.7	33	84	6	138	47	26	17	8	1.76
7108677--7108731	19	3.2	19	70	24	66	49	30	14	5	1.66
7108727--7108898	19	9.6	19	75	14	141	11	20	23	45	1.83
7108730--7108824	33	2.9	33	91	0	163	12	22	20	45	1.84
7110135--7110528	196	2.0	196	96	3	731	26	21	25	25	2.00
7110936--7111054	20	6.3	20	87	10	173	45	16	23	14	1.84
7110936--7111072	74	1.9	72	96	3	256	43	17	24	13	1.86
7111069--7111338	105	2.6	104	91	5	413	13	22	17	45	1.84
7111091--7111324	72	3.3	72	79	12	272	14	22	17	46	1.84
7111069--7111338	53	5.1	52	88	7	404	13	22	17	45	1.84
7113419--7113605	20	9.4	20	84	4	207	19	18	26	35	1.95
7113573--7113666	39	2.4	39	76	13	95	21	20	21	37	1.95
7122882--7122916	18	2.0	17	94	5	61	34	0	0	65	0.93
7123667--7123710	20	2.2	20	95	0	79	38	20	15	25	1.92
7127928--7128331	4	101.0	4	99	0	799	50	24	0	25	1.50
7129992--7130043	23	2.3	23	100	0	104	38	11	26	23	1.89
7131228--7131263	18	2.0	18	94	0	63	25	16	0	58	1.38
7131724--7131764	15	2.7	15	79	20	50	51	2	2	43	1.28
7131803--7131829	2	13.5	2	100	0	54	51	0	0	48	1.00
7136645--7136693	21	2.3	21	85	0	71	44	0	4	51	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7141202--7141772	55	10.4	55	91	2	882	27	25	16	30	1.97
7141202--7141771	221	2.6	221	91	3	891	27	25	16	30	1.97
7141202--7141772	276	2.1	275	91	2	932	27	25	16	30	1.97
7142772--7142835	12	5.6	11	77	22	62	17	7	0	75	1.04
7146316--7146343	8	3.5	8	100	0	56	50	10	0	39	1.37
7163701--7163792	39	2.3	40	85	9	127	48	1	13	36	1.49
7163720--7163806	39	2.2	38	84	6	120	50	0	13	35	1.42
7165467--7165505	21	2.0	20	85	10	53	48	10	5	35	1.59
7173301--7174127	211	3.9	210	91	1	1305	33	25	18	23	1.97
7173301--7174127	316	2.6	315	91	0	1305	33	25	18	23	1.97
7173301--7174127	105	7.8	105	92	1	1278	33	25	18	23	1.97
7175694--7175759	12	5.5	12	74	10	55	37	0	0	62	0.96
7175694--7175761	17	4.0	18	75	7	63	38	0	0	61	0.96
7175899--7175948	2	25.0	2	100	0	100	50	0	0	50	1.00
7175995--7176046	17	3.2	16	78	10	52	17	5	0	76	0.97
7186491--7186792	156	1.9	156	85	2	419	34	13	10	40	1.80
7195141--7195192	25	2.1	25	100	0	104	40	21	11	26	1.87
7199842--7199880	19	2.1	18	95	4	69	10	20	0	69	1.17
7201736--7201784	3	16.0	3	95	4	89	34	0	0	65	0.93
7201736--7201795	22	2.8	22	87	7	61	40	0	0	60	0.97
7201737--7201801	28	2.4	28	84	7	80	41	0	0	58	0.98
7202198--7202235	13	3.0	13	84	3	51	81	7	10	0	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7203435--7203459	11	2.3	11	100	0	50	32	8	0	60	1.26
7205639--7205681	14	3.1	14	82	0	59	27	16	2	53	1.55
7211192--7211417	114	2.0	114	91	0	362	32	15	20	30	1.94
7213870--7213924	22	2.5	22	84	0	74	36	12	14	36	1.84
7214310--7216252	116	17.0	116	94	1	3271	36	12	20	31	1.89
7216180--7216235	17	3.2	17	69	18	51	50	5	21	23	1.69
7216218--7216401	84	2.2	82	83	3	226	39	16	16	27	1.91
7216572--7216621	3	16.0	3	91	8	82	34	0	0	66	0.92
7216568--7216621	19	2.8	19	94	5	92	33	0	0	66	0.92
7216575--7216621	16	2.9	16	96	0	85	34	0	0	65	0.93
7217031--7217068	13	3.0	13	84	3	51	81	7	10	0	0.87
7217970--7218016	20	2.3	21	75	10	53	25	4	8	61	1.43
7218267--7218291	11	2.3	11	100	0	50	32	8	0	60	1.26
7224513--7224601	20	4.4	20	85	0	124	47	13	16	22	1.82
7224572--7224640	20	3.5	19	72	5	57	43	17	14	24	1.86
7225112--7225138	2	13.5	2	100	0	54	48	0	0	51	1.00
7224915--7225336	213	2.0	215	86	3	600	39	12	11	36	1.79
7225186--7225668	131	3.7	131	87	2	632	43	11	11	33	1.77
7229529--7229596	35	1.9	36	93	3	120	44	11	8	35	1.72
7229746--7229784	18	2.1	19	95	4	71	61	10	17	10	1.55
7231892--7231934	23	1.9	22	85	4	59	37	4	16	41	1.69
7236730--7236785	25	2.2	26	90	6	96	37	0	30	32	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7243652--7243682	14	2.2	14	100	0	62	58	6	0	35	1.24
7247509--7247537	14	2.1	14	100	0	58	79	0	6	13	0.93
7247635--7247908	37	7.5	37	79	12	232	43	5	4	46	1.47
7247635--7247894	74	3.6	74	80	11	263	43	5	5	46	1.48
7248588--7248655	29	2.4	28	90	4	102	39	10	13	36	1.78
7248644--7248770	67	1.9	67	85	6	177	42	14	18	25	1.87
7248764--7249726	84	11.7	83	75	6	825	23	20	25	29	1.99
7248764--7249726	165	5.8	165	91	1	1527	23	20	25	29	1.99
7253117--7253162	19	2.4	19	92	0	74	67	10	10	10	1.43
7253772--7253804	17	1.9	17	93	0	57	72	9	12	6	1.26
7256335--7256405	30	2.4	30	77	11	74	47	5	5	40	1.50
7256340--7256599	37	7.2	37	80	11	240	43	6	5	45	1.50
7257715--7257875	64	2.5	63	85	7	191	33	17	21	27	1.96
7257751--7257875	64	1.9	65	90	6	200	35	16	20	27	1.94
7258367--7258401	18	1.9	18	88	11	54	54	5	17	22	1.64
7258731--7258770	2	20.0	2	100	0	80	50	0	0	50	1.00
7259317--7259629	147	2.1	148	93	3	533	26	17	21	34	1.96
7260475--7260513	19	2.1	19	85	9	53	46	10	2	41	1.51
7262477--7262520	2	22.0	2	100	0	88	50	0	0	50	1.00
7269510--7269555	25	1.9	24	86	8	67	39	4	19	36	1.72
7269516--7269568	25	2.2	25	82	3	63	37	7	22	32	1.82
7270194--7270248	26	2.1	26	82	0	65	40	20	7	32	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7275905--7275955	26	1.9	27	92	4	86	37	25	5	31	1.80
7278822--7278853	2	15.5	2	93	6	55	46	3	0	50	1.17
7283301--7283373	3	24.3	3	72	10	60	65	2	28	2	1.20
7283303--7283349	21	2.2	21	88	0	67	65	4	27	2	1.22
7287998--7288038	19	2.1	20	86	4	57	58	9	2	29	1.43
7304754--7304782	2	14.5	2	100	0	58	51	0	0	48	1.00
7305989--7306071	3	27.7	3	92	4	141	34	0	0	65	0.93
7318185--7318226	17	2.6	16	82	14	50	80	0	11	7	0.88
7318184--7318242	26	2.3	27	77	16	70	77	0	16	5	0.93
7319220--7319838	52	11.9	52	94	2	1059	23	15	22	38	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40