genome.fa.s7923.2.7.7.80.10.50.1000.33.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007923.1 Hibiscus syriacus cultivar Beakdansim tig00110328_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8415618

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   

This is table  33  of  40  ( 4704 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6846105--6846231	33	3.8	33	86	8	195	17	22	18	41	1.90
6847861--6847957	19	5.6	18	68	24	75	44	19	22	13	1.86
6847861--6847954	33	2.8	33	93	0	152	44	19	22	13	1.85
6847954--6848011	19	3.3	19	71	26	56	12	17	25	44	1.83
6847954--6848076	33	3.7	33	86	3	158	13	20	23	43	1.86
6848002--6848057	14	3.6	14	74	21	58	10	25	21	42	1.85
6847985--6848044	19	3.4	18	71	21	56	13	21	20	45	1.85
6850069--6850136	20	3.5	19	82	6	82	38	23	23	14	1.92
6850109--6850206	33	3.0	33	91	2	164	48	20	18	12	1.79
6850125--6850181	14	3.7	14	70	20	51	52	21	15	10	1.72
6850213--6850309	19	5.6	18	67	22	66	13	19	20	46	1.83
6850235--6850293	14	3.9	14	74	20	55	13	16	22	47	1.82
6850218--6850309	33	2.8	33	91	0	148	13	18	20	47	1.81
6850294--6850348	20	2.8	20	86	2	67	14	23	23	38	1.92
6850830--6850874	18	2.5	18	88	0	72	13	15	44	26	1.83
6852194--6852252	20	3.0	20	87	0	73	42	22	18	16	1.89
6852796--6852828	16	2.1	16	100	0	66	24	18	24	33	1.97
6852715--6852845	20	6.7	19	76	12	88	23	18	24	33	1.97
6852756--6852866	57	1.9	57	81	3	134	20	20	23	35	1.96
6852916--6852956	21	2.0	21	85	0	55	34	29	17	19	1.94
6863006--6863079	37	2.0	36	87	7	105	47	0	4	48	1.20
6864790--6864843	22	2.4	22	84	9	65	57	0	5	37	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6872708--6872812	30	3.7	27	79	10	77	32	2	0	63	1.15
6872740--6872836	31	3.2	30	84	8	115	29	2	3	64	1.20
6872720--6872836	60	2.0	60	81	11	143	31	2	2	63	1.21
6872792--6872851	31	2.0	30	83	6	77	36	1	6	55	1.36
6873051--6873137	29	2.9	29	76	6	75	55	0	4	40	1.21
6873141--6873194	22	2.5	22	75	0	54	48	0	5	46	1.25
6873192--6873299	29	3.7	29	77	17	107	59	0	4	35	1.25
6875538--6875633	29	3.3	27	74	16	77	58	3	1	37	1.21
6875540--6875580	14	2.8	15	85	7	57	58	0	0	41	0.98
6875538--6875610	29	2.5	28	84	6	101	61	0	1	36	1.05
6879304--6879363	28	2.1	28	90	0	93	25	21	8	45	1.80
6879598--6879634	17	2.2	17	90	9	58	16	27	18	37	1.92
6880610--6880641	14	2.4	14	94	5	57	18	0	12	68	1.20
6881061--6881091	15	2.1	15	93	0	53	45	0	0	54	0.99
6881247--6881288	20	2.1	20	100	0	84	19	21	9	50	1.75
6881251--6881297	20	2.3	20	92	0	76	23	19	4	53	1.63
6893044--6893168	31	4.0	31	87	2	162	40	22	17	20	1.92
6893558--6893609	21	2.5	21	100	0	104	25	25	23	26	2.00
6893638--6893677	20	1.9	21	85	10	55	37	37	10	15	1.80
6896839--6896921	43	1.9	43	92	0	139	27	25	21	25	1.99
6896840--6896917	21	3.7	21	67	3	57	28	25	21	24	1.99
6896974--6897021	21	2.3	21	92	0	78	29	25	20	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6898431--6898485	20	2.8	20	100	0	110	25	34	16	23	1.95
6900802--6901186	195	2.0	194	88	1	565	35	9	16	38	1.81
6902437--6902585	76	2.0	76	86	2	210	45	6	16	31	1.72
6902598--6902986	187	2.1	185	80	4	444	39	11	15	32	1.84
6902839--6903374	157	3.4	156	80	6	591	42	10	14	33	1.79
6903482--6903710	72	3.1	72	79	7	246	42	8	14	34	1.76
6907560--6907597	20	2.0	20	89	5	60	42	26	0	31	1.56
6909664--6909753	33	2.7	33	78	0	108	16	7	27	47	1.74
6911993--6912030	19	2.0	19	85	10	51	34	7	0	57	1.28
6911999--6912036	19	2.1	19	90	5	60	34	5	0	60	1.19
6915606--6915678	14	5.1	14	73	12	67	9	8	19	63	1.50
6915862--6915948	10	8.6	10	70	12	61	16	6	13	63	1.50
6915863--6915931	18	3.4	20	84	11	88	14	5	14	65	1.45
6915863--6915960	33	2.8	34	86	7	110	14	7	15	63	1.51
6915885--6915979	33	2.8	33	85	6	127	14	9	14	61	1.57
6931403--6931461	21	2.6	22	82	15	75	40	6	1	50	1.39
6931407--6931475	25	2.6	27	76	21	74	40	5	1	52	1.34
6931421--6931477	27	2.2	25	85	11	80	40	5	0	54	1.23
6931458--6931517	25	2.3	27	82	5	79	40	1	0	58	1.08
6932709--6932750	5	8.4	5	94	0	75	38	0	61	0	0.96
6935581--6935674	19	4.9	19	68	18	70	51	1	0	47	1.07
6935624--6935670	25	1.9	24	86	4	67	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6935643--6935672	16	1.9	15	93	6	51	50	0	0	50	1.00
6937334--6937361	14	2.0	14	100	0	56	21	7	14	57	1.61
6939253--6939285	16	2.1	15	94	5	57	30	9	6	54	1.56
6941587--6941617	16	1.9	16	93	0	53	38	0	0	61	0.96
6949653--6949734	41	2.0	41	97	0	155	34	12	18	35	1.88
6962507--6962546	2	20.0	2	94	0	71	52	0	0	47	1.00
6965330--6965362	17	1.9	17	100	0	66	15	24	42	18	1.88
6972693--6972739	22	2.1	22	96	0	85	12	23	44	19	1.85
6974532--6974571	21	1.9	21	84	0	53	32	2	15	50	1.57
6976872--6976942	30	2.4	30	92	0	115	49	4	8	38	1.53
6979339--6979372	11	2.9	12	86	8	52	55	2	5	35	1.39
6980472--6980513	22	1.9	22	95	0	75	42	7	2	47	1.43
6981502--6981547	24	1.9	24	86	8	67	39	4	0	56	1.19
6981562--6981609	2	24.5	2	95	4	89	47	0	0	52	1.00
6981770--6981851	27	3.0	26	71	18	67	57	1	1	40	1.14
6981813--6981845	17	1.9	17	88	11	50	51	0	3	45	1.16
6984613--6984670	28	2.0	29	90	3	91	50	18	0	31	1.48
6986421--6986496	16	4.9	15	90	4	98	35	6	27	30	1.82
6986404--6986495	47	2.0	47	82	6	116	36	6	26	30	1.82
6986421--6986496	31	2.4	31	85	8	100	35	6	27	30	1.82
6988225--6988899	137	4.9	137	88	1	861	25	18	29	26	1.98
7003420--7003449	14	2.1	14	100	0	60	40	6	13	40	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7005247--7005522	84	3.3	84	82	4	322	25	20	22	31	1.98
7005525--7005576	27	1.9	27	92	0	86	38	7	15	38	1.76
7005676--7005864	36	5.2	36	93	1	324	36	13	22	26	1.92
7005676--7005864	73	2.6	73	94	0	335	36	13	22	26	1.92
7006213--7006578	106	3.4	106	88	3	520	23	19	24	33	1.97
7011960--7011994	17	2.0	18	88	5	54	40	0	0	60	0.97
7011990--7012032	22	2.0	22	86	9	61	48	9	0	41	1.35
7012039--7012069	4	7.8	4	100	0	62	25	0	22	51	1.48
7012797--7012858	27	2.3	27	83	13	74	43	19	17	19	1.88
7012829--7012913	31	2.7	31	83	0	107	38	17	17	25	1.92
7017871--7017925	21	2.5	21	76	5	56	58	0	3	38	1.16
7018004--7018053	23	2.3	23	82	6	59	36	2	2	60	1.20
7018454--7018814	160	2.3	155	84	6	458	26	16	6	51	1.67
7018454--7018865	160	2.6	160	82	5	396	28	16	5	49	1.69
7023893--7023926	16	2.1	16	100	0	68	32	20	17	29	1.96
7037142--7037174	6	5.5	6	100	0	66	0	30	33	36	1.58
7038138--7038213	36	2.1	36	97	0	143	43	14	10	31	1.79
7042685--7042714	15	2.0	15	100	0	60	13	46	26	13	1.80
7043136--7043211	36	2.1	36	97	0	143	43	14	10	31	1.79
7045320--7045355	2	18.0	2	100	0	72	50	0	0	50	1.00
7045841--7045865	2	12.5	2	100	0	50	52	0	0	48	1.00
7047679--7047718	20	2.1	19	90	9	64	55	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7047670--7047733	19	3.2	19	71	8	56	56	0	0	43	0.99
7047684--7047747	24	2.6	22	79	18	65	56	1	0	42	1.09
7047807--7047853	19	2.4	19	82	3	58	53	2	14	29	1.53
7055360--7055403	14	2.9	16	76	13	56	34	4	50	11	1.59
7067840--7068237	53	7.5	53	85	5	493	22	26	21	29	1.99
7067884--7068237	157	2.2	158	88	4	509	20	27	21	29	1.98
7068304--7068383	42	1.9	42	97	0	151	33	20	18	27	1.96
7068372--7068396	13	1.9	13	100	0	50	24	20	24	32	1.98
7068605--7068704	42	2.4	41	78	3	101	33	24	19	24	1.97
7068420--7068917	213	2.3	213	89	2	766	33	19	15	31	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40