genome.fa.s7984.2.7.7.80.10.50.1000.45.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007984.1 Hibiscus syriacus cultivar Beakdansim tig00110429_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  12923621

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   

This is table  45  of  65  ( 7696 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9087815--9088308	235	2.1	231	88	4	739	34	26	18	20	1.96
9088149--9088308	65	2.5	66	86	6	213	35	26	18	19	1.95
9088042--9088245	106	1.9	105	87	6	277	35	26	18	19	1.95
9087980--9088315	171	2.0	170	96	0	627	34	26	19	20	1.96
9090822--9090947	19	6.2	19	69	20	76	37	26	16	19	1.93
9090788--9090934	42	3.5	42	91	0	240	37	23	17	21	1.94
9090855--9090995	61	2.3	61	90	2	219	36	24	18	21	1.95
9090813--9091003	103	1.9	102	88	4	294	37	24	17	20	1.94
9090918--9091003	42	2.2	38	89	8	127	37	22	19	20	1.95
9090999--9091051	21	2.5	21	90	0	79	16	18	32	32	1.94
9092045--9092091	17	2.6	19	80	6	62	40	29	4	25	1.75
9093602--9093664	19	3.4	19	76	12	76	55	1	6	36	1.35
9093585--9093678	37	2.5	37	89	0	143	55	2	5	37	1.35
9098657--9098691	19	1.9	17	88	11	52	77	2	2	17	1.02
9098887--9098942	16	3.2	17	77	10	60	73	0	3	23	0.99
9098922--9099005	36	2.3	39	85	8	113	65	2	4	27	1.25
9100514--9100720	110	1.9	110	90	2	335	22	18	23	35	1.95
9101730--9101765	17	2.2	17	90	5	56	5	2	5	86	0.79
9101730--9101776	24	1.9	25	86	4	69	6	2	6	85	0.82
9112126--9112195	25	2.7	26	82	10	72	71	5	5	17	1.25
9112128--9112195	26	2.7	25	76	15	77	72	5	4	17	1.22
9114750--9114834	33	2.6	33	98	0	161	20	10	27	42	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9115689--9115735	21	2.2	21	96	0	85	25	21	25	27	1.99
9117991--9118039	18	2.7	19	87	9	68	51	0	0	48	1.00
9119256--9119292	19	1.9	19	94	0	65	32	29	16	21	1.95
9119398--9119459	21	3.0	21	70	13	65	33	24	17	24	1.96
9120288--9120341	24	2.2	24	87	6	74	20	20	18	40	1.91
9120541--9120567	14	1.9	14	100	0	54	44	29	18	7	1.77
9122603--9122641	12	3.2	12	85	0	51	56	28	0	15	1.40
9122604--9122638	18	1.9	18	94	0	61	57	25	0	17	1.40
9122696--9122978	140	2.0	140	99	0	557	27	13	15	43	1.84
9122949--9123065	20	5.8	20	92	0	180	33	22	17	27	1.96
9122949--9123105	40	4.1	40	80	8	182	35	21	17	26	1.95
9123104--9123181	20	3.9	20	89	0	111	12	17	25	43	1.85
9123256--9123341	36	2.4	36	94	0	145	55	13	3	26	1.54
9123333--9123369	16	2.2	17	95	4	67	48	16	2	32	1.60
9124680--9124802	42	2.9	42	79	7	142	23	18	36	21	1.95
9124680--9124794	21	5.5	21	72	4	88	22	19	36	21	1.95
9125288--9125331	20	2.2	20	95	0	79	54	22	9	13	1.67
9125322--9125386	20	3.3	19	82	8	76	35	23	21	20	1.96
9125391--9125429	19	2.0	20	90	5	62	51	20	15	12	1.76
9126976--9127101	64	2.0	64	82	6	157	34	19	16	28	1.94
9127044--9127147	45	2.3	45	83	3	120	33	24	15	26	1.95
9127473--9127508	12	3.0	12	91	0	63	33	5	25	36	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9127473--9127541	24	2.8	26	83	12	85	37	5	24	31	1.79
9135516--9135732	64	3.4	64	82	5	215	35	20	17	27	1.95
9136044--9136079	12	3.0	12	91	0	63	33	5	25	36	1.79
9136044--9136112	24	2.8	26	83	12	85	37	5	24	31	1.79
9140224--9140318	24	4.0	24	80	0	100	20	13	16	49	1.79
9140247--9140316	12	5.8	12	80	6	70	15	15	17	51	1.77
9143515--9143567	24	2.2	24	100	0	106	39	11	20	28	1.87
9145391--9145485	24	4.0	24	80	0	91	21	13	16	48	1.81
9145414--9145483	12	5.8	12	76	6	61	17	14	17	51	1.77
9147809--9147880	20	3.6	20	84	0	81	43	23	18	15	1.88
9147843--9147890	20	2.4	20	89	0	69	35	22	14	27	1.93
9148256--9148313	22	2.6	22	86	0	89	17	17	44	20	1.86
9148494--9148542	20	2.5	20	96	0	89	18	22	16	42	1.88
9150234--9150275	21	2.0	21	82	17	52	40	2	0	57	1.12
9150698--9150751	23	2.3	24	81	12	67	48	3	5	42	1.44
9152193--9152234	5	8.4	5	87	10	50	16	4	0	78	0.91
9152198--9152240	20	2.2	19	84	12	52	18	2	0	79	0.85
9152198--9152263	21	3.2	21	77	14	57	15	7	0	77	0.98
9152436--9152505	11	6.6	10	72	16	52	17	2	1	78	0.94
9154714--9154838	57	2.2	57	92	0	205	48	11	20	20	1.79
9155089--9155154	25	2.6	25	100	0	132	16	10	19	53	1.72
9156723--9156760	20	1.9	20	84	10	51	21	23	10	44	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9157193--9157226	13	2.6	13	90	0	59	32	44	0	23	1.54
9160681--9160726	20	2.2	21	80	3	58	65	0	6	28	1.17
9176819--9176865	13	3.5	13	82	8	58	78	0	19	2	0.85
9177804--9178199	185	2.1	185	87	0	560	34	20	17	27	1.95
9179064--9179629	277	2.0	277	98	0	1105	31	15	18	34	1.92
9180177--9180214	16	2.3	17	86	13	53	15	5	5	73	1.19
9180343--9180420	31	2.5	31	76	17	81	24	6	1	67	1.21
9180501--9180558	15	3.9	15	76	14	50	15	3	1	79	0.95
9180502--9180563	29	2.1	30	85	8	83	14	4	1	79	0.98
9182550--9182576	2	13.5	2	100	0	54	48	0	0	51	1.00
9187222--9187271	26	1.9	26	87	0	73	30	8	14	48	1.72
9192664--9192701	13	2.8	13	88	4	58	18	15	21	44	1.86
9195551--9195638	23	3.8	23	92	0	140	15	23	23	36	1.94
9196289--9196402	29	3.9	29	82	3	122	21	26	14	37	1.92
9196295--9196407	57	1.9	59	83	3	149	22	27	14	36	1.92
9196401--9196467	30	2.2	30	86	0	89	31	19	11	37	1.88
9196401--9196481	30	2.7	31	81	7	87	29	17	13	39	1.88
9197739--9197787	20	2.5	20	96	0	89	32	8	14	44	1.74
9202880--9202959	2	40.0	2	100	0	160	50	0	0	50	1.00
9204622--9204679	28	2.1	28	96	0	107	32	10	24	32	1.89
9206153--9206217	32	2.0	32	88	5	96	18	29	27	24	1.98
9206491--9206585	31	3.0	31	79	1	91	22	27	26	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9207902--9207935	16	2.1	17	88	5	52	35	0	0	64	0.94
9212213--9212269	20	2.8	20	100	0	114	26	15	15	42	1.87
9213063--9213114	21	2.5	21	96	0	95	34	36	9	19	1.84
9220019--9220043	3	8.3	3	100	0	50	68	0	0	32	0.90
9223718--9223827	20	5.4	21	82	3	100	31	18	20	30	1.96
9223733--9223785	20	2.7	20	100	0	106	37	20	20	20	1.94
9223733--9223824	41	2.3	40	83	5	105	34	18	21	25	1.96
9223792--9223839	20	2.3	20	85	3	60	25	20	16	37	1.93
9227267--9227310	20	2.3	19	84	4	52	36	18	22	22	1.95
9227294--9227424	19	7.7	19	66	23	94	45	18	23	12	1.83
9227294--9227420	33	3.8	33	94	0	218	45	18	23	12	1.83
9227420--9227514	19	5.3	19	82	14	105	12	17	24	45	1.83
9227435--9227498	33	1.9	33	93	6	112	9	17	25	48	1.76
9227479--9227522	19	2.3	19	88	0	61	15	20	18	45	1.85
9227621--9227657	14	2.6	14	91	0	65	45	21	0	32	1.52
9229010--9229076	21	3.2	21	68	4	55	19	20	35	23	1.95
9229010--9229132	42	2.9	41	79	7	113	22	18	36	21	1.95
9229553--9229674	19	6.6	19	77	11	128	46	19	21	12	1.82
9229529--9229638	39	2.8	38	82	8	132	49	20	19	11	1.79
9229680--9229722	20	2.2	20	95	4	79	2	13	30	53	1.53
9229873--9230248	94	4.1	93	92	3	555	47	18	11	22	1.81
9231053--9231095	21	2.0	22	82	13	54	48	0	6	44	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9231946--9232008	20	3.2	20	82	8	83	46	17	23	12	1.83
9231993--9232081	14	5.6	14	67	23	52	44	22	23	8	1.81
9231944--9232098	33	4.5	33	81	5	175	46	20	23	10	1.81
9231972--9232098	66	1.9	67	91	1	211	44	22	22	10	1.82
9232129--9232183	20	2.8	20	86	2	85	12	21	21	43	1.86
9232129--9232176	19	2.5	19	89	3	69	12	22	25	39	1.89
9232726--9232820	20	4.7	20	82	3	109	18	22	20	38	1.93
9232726--9232820	41	2.3	41	94	0	163	18	22	20	38	1.93
9236463--9236525	24	2.7	24	82	7	67	12	7	19	60	1.56
9239117--9239183	22	3.0	22	88	0	98	41	14	11	31	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65