Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007984.1 Hibiscus syriacus cultivar Beakdansim tig00110429_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  12923621

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   

This is table  65  of  65  ( 7696 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12880411--12880507
32
3.0
32
100
0
194
38
18
9
34
1.83
12882699--12882752
26
2.0
27
86
10
76
66
0
9
24
1.20
12883078--12883108
2
15.5
2
100
0
62
51
0
0
48
1.00
12884894--12885563
105
6.4
105
98
0
1277
22
17
24
34
1.96
12895769--12895812
20
2.2
20
88
8
63
72
2
6
18
1.17
12897388--12897458
11
6.8
10
74
17
65
64
1
2
30
1.16
12897376--12897482
42
2.5
43
82
13
116
60
0
4
33
1.24
12897427--12897482
22
2.6
21
82
2
67
62
0
7
30
1.22
12897447--12897481
19
1.9
17
88
11
52
62
0
5
31
1.18
12904417--12904477
30
2.1
30
87
6
90
42
6
11
39
1.67
12905537--12905642
39
2.7
39
81
5
124
38
13
2
45
1.58
12905886--12905967
26
3.3
23
78
14
76
46
2
1
50
1.22
12906106--12906181
31
2.5
31
86
4
109
48
9
9
32
1.67
12909509--12909551
12
3.6
12
83
0
59
27
0
39
32
1.57
12909648--12909687
21
2.0
20
85
9
55
42
0
7
50
1.30
12915779--12915847
32
2.2
31
82
5
86
30
4
5
59
1.40

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65

The End!