genome.fa.s7984.2.7.7.80.10.50.1000.48.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007984.1 Hibiscus syriacus cultivar Beakdansim tig00110429_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  12923621

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   

This is table  48  of  65  ( 7696 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9577406--9577462	6	8.4	7	77	11	57	0	15	1	82	0.75
9577334--9577441	56	1.9	55	81	9	130	1	15	5	76	1.05
9577432--9577473	21	2.0	21	85	0	57	2	16	2	78	0.96
9577327--9577483	74	2.1	74	82	9	187	1	15	5	76	1.06
9578807--9578836	14	2.1	15	93	6	53	53	13	20	13	1.72
9582839--9582891	21	2.5	21	87	0	79	20	24	20	33	1.97
9582881--9582971	20	4.6	20	94	0	155	41	16	20	20	1.90
9582960--9583113	20	7.7	20	88	0	227	29	27	18	25	1.98
9582940--9583111	40	4.3	40	86	7	192	30	26	18	24	1.98
9583285--9583326	22	1.9	22	90	0	66	28	35	14	21	1.92
9583752--9583819	20	3.4	20	95	0	118	13	14	25	47	1.80
9585733--9585860	20	6.4	20	92	0	193	37	23	19	19	1.94
9585883--9586002	34	3.4	34	78	13	150	20	21	20	37	1.94
9585883--9586094	74	2.8	74	91	4	325	18	21	21	38	1.93
9585902--9586094	20	9.9	20	87	6	272	19	20	21	38	1.93
9586547--9586588	21	2.2	19	87	12	59	21	35	19	23	1.96
9586570--9586663	42	2.2	42	84	3	118	23	37	19	20	1.94
9586594--9586663	21	3.3	21	68	5	61	24	35	20	20	1.96
9587991--9588130	46	3.2	46	67	19	143	35	0	15	47	1.51
9587991--9588170	86	2.1	87	97	1	344	35	0	16	47	1.51
9588127--9588162	14	2.6	14	90	0	54	30	0	22	47	1.52
9588301--9588365	19	3.7	19	72	19	68	41	18	24	15	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9588268--9588359	33	2.8	33	88	1	130	41	20	23	14	1.89
9588342--9588450	52	2.1	53	81	5	132	20	22	18	39	1.92
9588355--9588455	19	5.8	19	71	18	87	14	24	16	43	1.86
9588393--9588474	33	2.5	33	87	0	110	15	23	17	43	1.87
9588457--9588550	20	4.7	20	92	2	145	18	21	24	36	1.95
9591021--9591080	24	2.5	24	88	0	93	38	16	18	26	1.92
9591858--9591906	20	2.4	20	80	10	55	28	10	28	32	1.90
9591900--9592027	20	6.4	20	92	0	211	24	18	28	28	1.98
9592016--9592126	20	5.6	19	93	2	150	20	19	18	41	1.91
9591916--9592126	40	5.3	41	83	10	129	22	19	22	35	1.96
9592001--9592126	60	2.1	60	85	5	166	22	19	19	39	1.92
9592123--9592168	21	2.2	21	92	0	74	36	19	26	17	1.94
9592346--9592415	3	23.0	3	77	13	72	65	0	0	34	0.93
9593680--9593740	3	20.3	3	100	0	122	67	0	0	32	0.91
9594397--9594460	25	2.5	25	82	12	85	43	4	0	51	1.22
9594441--9594500	25	2.3	27	82	5	79	40	1	0	58	1.08
9598016--9598154	69	2.0	70	95	1	253	48	15	8	28	1.74
9598865--9598905	20	2.0	20	85	0	55	29	24	17	29	1.97
9604950--9605000	2	25.5	2	100	0	102	50	49	0	0	1.00
9605000--9605032	2	16.5	2	100	0	66	51	0	0	48	1.00
9610002--9610060	26	2.3	26	88	2	84	35	25	13	25	1.93
9614845--9614922	20	3.8	20	93	5	129	24	37	25	12	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9620654--9620800	23	6.7	22	74	15	128	28	25	19	26	1.99
9620685--9620822	43	3.2	43	89	6	208	26	28	19	25	1.99
9622828--9622870	19	2.3	18	84	7	59	16	2	25	55	1.53
9623572--9623668	22	4.6	21	83	10	117	23	39	21	15	1.92
9624760--9624885	5	24.2	5	75	15	53	73	3	6	15	1.18
9626506--9626603	33	2.8	35	90	4	146	31	9	19	39	1.83
9626122--9627084	478	2.0	479	98	0	1856	28	17	21	31	1.97
9626984--9627068	33	2.5	34	92	5	136	31	9	18	40	1.83
9627086--9627196	36	3.1	36	78	8	120	41	14	19	24	1.89
9627210--9627266	30	1.9	30	82	13	73	35	12	15	36	1.85
9627254--9627439	36	5.3	36	68	17	113	39	12	20	27	1.88
9627223--9627503	102	2.8	102	80	5	300	40	12	18	28	1.87
9627450--9627643	102	1.9	102	90	0	307	37	12	17	32	1.87
9627280--9627605	167	2.0	165	86	2	456	39	12	18	29	1.87
9627470--9627681	102	2.1	102	85	1	282	38	12	17	31	1.87
9628203--9628349	23	6.7	22	73	15	119	28	25	19	25	1.99
9628257--9628326	20	3.3	20	69	18	61	28	30	18	22	1.98
9628228--9628371	43	3.3	43	92	1	227	26	28	20	25	1.99
9630385--9630427	19	2.3	18	84	7	59	16	2	25	55	1.53
9631127--9631181	21	2.7	21	91	2	85	27	43	18	10	1.83
9632246--9632371	5	24.2	5	75	15	53	73	3	6	15	1.18
9632522--9632567	2	23.0	2	84	8	58	54	0	2	43	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9632537--9632577	20	2.0	20	90	0	64	60	0	2	36	1.10
9633994--9634077	33	2.5	34	94	3	143	32	9	19	39	1.83
9634096--9634201	36	3.0	36	80	9	119	44	15	17	22	1.86
9634104--9634199	35	2.7	36	82	11	117	46	15	17	19	1.84
9634219--9634275	30	1.9	30	82	13	73	35	12	15	36	1.85
9634263--9634345	36	2.3	36	89	0	121	42	14	19	24	1.88
9634232--9634512	102	2.8	102	79	5	300	40	13	18	28	1.88
9634415--9634577	65	2.5	65	80	5	177	38	12	19	29	1.89
9634454--9634652	102	1.9	103	89	3	312	39	13	16	31	1.87
9634294--9634659	167	2.2	167	84	2	477	38	12	18	30	1.88
9634479--9634711	102	2.3	102	84	3	290	39	12	18	29	1.88
9634699--9634739	19	2.2	19	95	0	73	41	9	17	31	1.82
9634843--9634967	36	3.5	36	70	12	112	41	15	15	28	1.87
9634760--9634981	72	3.0	72	88	3	293	40	13	17	28	1.88
9634931--9635033	52	2.0	52	96	0	188	37	15	16	30	1.90
9636202--9636760	195	2.9	195	94	0	992	30	19	21	28	1.98
9644220--9644253	6	5.7	6	86	13	52	17	0	0	82	0.67
9658826--9658880	21	2.6	21	97	0	101	27	30	21	20	1.98
9662589--9662732	18	8.2	18	71	16	99	38	2	56	3	1.28
9662589--9662732	28	5.1	27	80	13	132	38	2	56	3	1.28
9662604--9662769	14	11.3	14	68	10	71	37	1	56	4	1.26
9662564--9662735	10	17.6	10	71	13	90	40	2	54	2	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9662605--9662776	18	9.3	18	70	18	68	37	1	55	4	1.31
9662696--9662757	22	2.8	22	82	0	70	38	0	54	6	1.26
9662753--9662821	22	3.2	22	75	13	65	44	1	49	4	1.31
9663394--9663448	28	2.0	28	85	0	74	25	16	10	47	1.79
9666345--9666417	20	3.9	19	72	15	71	36	19	21	21	1.95
9667802--9667865	22	2.9	22	92	0	110	28	21	25	25	1.99
9675543--9675573	2	15.5	2	100	0	62	51	0	0	48	1.00
9675593--9675758	85	2.0	85	82	2	208	28	18	21	31	1.97
9675730--9675794	13	5.0	13	79	7	78	32	15	20	32	1.93
9676955--9677013	31	1.9	31	89	0	91	27	27	11	33	1.92
9677773--9677839	33	2.1	31	83	8	82	29	37	20	11	1.89
9678559--9678625	31	2.2	31	88	0	107	22	29	13	34	1.92
9679030--9679102	28	2.6	29	97	2	139	42	28	17	10	1.83
9679967--9680044	31	2.5	31	91	0	120	25	25	14	34	1.94
9681129--9681156	14	2.0	14	100	0	56	28	50	21	0	1.49
9681864--9681930	31	2.2	31	88	0	107	22	29	13	34	1.92
9682333--9682405	28	2.6	29	97	2	139	42	28	17	10	1.83
9683270--9683347	31	2.5	31	91	0	120	25	25	14	34	1.94
9683348--9683406	31	1.9	31	89	0	91	32	13	27	27	1.94
9684430--9684457	14	2.0	14	100	0	56	28	50	21	0	1.49
9685163--9685229	31	2.2	31	88	0	107	22	29	13	34	1.92
9685636--9685708	28	2.6	29	97	2	139	42	28	17	10	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9686571--9686648	31	2.5	31	91	0	120	25	25	14	34	1.94
9686649--9686707	31	1.9	31	89	0	91	32	13	27	27	1.94
9688457--9688534	31	2.5	31	91	0	129	24	28	14	33	1.94
9688938--9689010	28	2.6	29	97	2	139	41	30	17	10	1.84
9689875--9689946	31	2.3	31	85	7	92	27	23	12	36	1.91
9689892--9689953	31	2.0	31	93	6	108	24	22	16	37	1.94
9691034--9691061	14	2.0	14	100	0	56	28	50	21	0	1.49
9691768--9691834	31	2.2	31	89	5	109	20	28	14	35	1.93
9692237--9692306	28	2.5	28	97	0	131	44	30	17	8	1.78
9693172--9693249	31	2.5	31	89	4	113	25	24	14	35	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65