genome.fa.s7984.2.7.7.80.10.50.1000.34.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007984.1 Hibiscus syriacus cultivar Beakdansim tig00110429_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  12923621

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   

This is table  34  of  65  ( 7696 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6897881--6898070	47	4.0	47	93	2	328	28	18	23	28	1.98
6898451--6898532	42	2.0	42	90	0	128	34	20	21	23	1.97
6898092--6899347	249	5.0	249	93	1	2093	34	18	17	30	1.93
6898705--6898786	42	2.0	42	90	0	128	34	23	21	20	1.97
6900476--6900588	51	2.2	52	88	1	165	25	21	13	39	1.89
6902079--6902115	10	3.6	11	86	13	53	0	13	0	86	0.57
6902075--6902113	13	3.1	13	85	14	55	0	12	0	87	0.55
6904496--6904526	7	4.4	7	100	0	62	41	0	29	29	1.56
6906891--6907007	60	2.0	59	93	1	198	38	30	14	16	1.88
6912425--6912458	17	2.1	17	88	5	52	11	20	2	64	1.39
6918032--6918060	15	1.9	15	100	0	58	41	0	51	6	1.28
6919340--6919413	32	2.3	32	78	0	85	33	17	13	35	1.89
6925669--6925710	22	1.9	22	100	0	84	30	35	23	9	1.87
6925670--6925861	76	2.5	76	93	2	325	29	28	23	18	1.98
6927753--6927793	21	2.0	21	90	0	64	60	7	7	24	1.48
6931408--6931468	23	2.7	22	76	2	68	22	34	19	22	1.97
6934191--6934311	54	2.2	55	86	1	172	32	18	25	23	1.97
6948628--6948677	25	2.0	24	81	14	57	44	6	18	32	1.74
6952018--6952043	13	2.0	13	100	0	52	38	7	23	30	1.83
6955805--6955853	23	2.1	23	92	0	80	28	22	22	26	1.99
6955847--6955896	21	2.4	21	93	0	82	38	32	12	18	1.87
6956405--6956459	23	2.5	22	82	8	69	25	27	21	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6956442--6956571	54	2.4	52	84	7	163	29	20	19	31	1.97
6956555--6956604	20	2.5	20	96	0	91	28	26	16	30	1.96
6960068--6960103	15	2.4	15	90	9	56	47	0	0	52	1.00
6960073--6960108	17	2.1	17	90	10	56	38	0	0	61	0.96
6961641--6961678	14	2.7	14	100	0	76	15	26	15	42	1.87
6962682--6962749	26	2.6	27	76	2	75	17	14	10	57	1.65
6967739--6968081	132	2.6	136	87	3	514	32	17	22	27	1.96
6967964--6968177	96	2.2	96	90	0	338	30	15	23	30	1.96
6967837--6968313	232	2.1	228	90	3	733	31	18	22	27	1.97
6968065--6968487	136	3.2	134	88	3	613	33	17	22	26	1.96
6967739--6968447	368	1.9	362	89	2	1078	32	17	22	27	1.97
6968509--6968951	91	4.9	91	91	0	688	40	15	18	25	1.90
6968614--6968677	20	3.2	20	61	12	51	42	12	21	23	1.87
6971048--6971089	17	2.5	17	88	11	61	42	0	0	57	0.99
6971046--6971085	15	2.6	16	85	14	57	42	0	0	57	0.98
6972853--6972886	14	2.4	14	95	0	59	20	8	17	52	1.71
6976795--6976916	40	3.0	40	98	0	235	23	17	26	32	1.96
6983768--6983889	40	3.0	40	98	0	235	23	17	26	32	1.96
6985305--6985386	23	3.7	23	76	15	91	28	24	23	24	2.00
6986268--6986369	42	2.4	43	80	3	127	29	24	13	32	1.94
6991918--6992209	117	2.5	116	87	2	415	31	32	16	19	1.94
6999270--6999560	117	2.5	117	86	2	406	32	32	14	19	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7000548--7000573	7	3.7	7	100	0	52	23	30	30	15	1.95
7002866--7002928	31	2.0	31	81	9	74	33	9	11	46	1.72
7010048--7010110	31	2.2	27	78	15	74	31	28	19	20	1.97
7010692--7010717	10	2.6	10	100	0	52	76	7	7	7	1.15
7013703--7013791	31	2.9	30	79	9	83	75	1	11	12	1.11
7013922--7013972	16	3.2	16	81	15	70	72	0	1	25	0.95
7013924--7013993	20	3.6	20	76	18	76	71	0	4	24	1.04
7013924--7013969	5	9.0	5	81	13	58	73	0	2	23	0.94
7013929--7013978	15	3.3	15	79	20	59	72	0	2	26	0.96
7013927--7013995	21	3.2	20	75	18	59	71	0	4	24	1.05
7013923--7013995	28	2.5	28	76	14	78	69	0	4	26	1.06
7014018--7014059	18	2.3	18	91	0	66	66	0	7	26	1.17
7014667--7014699	2	16.5	2	100	0	66	51	0	0	48	1.00
7015591--7015638	23	2.1	23	88	0	69	35	12	18	33	1.89
7016119--7016191	23	3.2	23	92	0	119	38	21	5	34	1.77
7016603--7016657	23	2.5	21	80	11	65	41	20	3	34	1.69
7016608--7016656	23	2.1	23	92	0	80	40	20	4	34	1.71
7016644--7017309	183	3.6	183	95	1	1158	32	16	14	36	1.89
7017968--7017992	12	2.1	12	100	0	50	32	16	20	32	1.94
7018528--7018590	12	5.2	12	84	0	81	22	31	7	38	1.83
7018528--7018603	24	3.2	25	77	7	77	22	30	7	39	1.82
7018528--7018603	6	12.7	6	75	0	53	22	30	7	39	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7020075--7020839	200	3.8	200	95	0	1325	30	18	15	36	1.91
7020075--7020839	401	1.9	401	94	0	1352	30	18	15	36	1.91
7020940--7021000	19	3.3	18	88	2	59	52	11	1	34	1.47
7020952--7021000	19	2.6	19	96	0	89	55	10	2	32	1.45
7022795--7022860	33	2.0	33	90	0	105	22	48	0	28	1.51
7022894--7022958	21	3.1	21	90	0	94	16	30	9	43	1.80
7025182--7025224	20	2.3	18	85	14	61	20	16	11	51	1.75
7025187--7025233	20	2.4	19	82	10	67	19	17	10	53	1.72
7026382--7026680	42	7.1	42	75	10	236	26	18	5	49	1.69
7026382--7026674	84	3.5	83	75	8	263	26	18	5	49	1.70
7026334--7026674	127	2.7	126	76	10	334	26	17	5	50	1.67
7035568--7035614	16	2.9	16	75	9	51	44	14	8	31	1.76
7035553--7035614	32	1.9	32	87	6	90	40	16	9	33	1.81
7044033--7044294	133	2.0	133	100	0	524	41	9	11	36	1.75
7045642--7045683	22	2.0	21	86	9	59	61	4	21	11	1.48
7057327--7057386	29	2.1	29	96	0	111	26	31	6	35	1.82
7057821--7057917	51	1.9	51	97	0	185	30	20	20	27	1.98
7057885--7057943	26	2.3	26	96	0	109	30	22	20	27	1.98
7059649--7059710	27	2.3	27	100	0	124	33	9	24	32	1.88
7059984--7060017	2	17.0	2	100	0	68	50	0	0	50	1.00
7063418--7063518	36	2.8	37	79	8	116	39	12	14	32	1.85
7066148--7066213	27	2.5	26	74	16	64	36	6	10	46	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7066924--7066984	20	3.0	21	81	13	74	75	6	16	1	1.09
7068486--7068590	36	2.9	36	86	8	149	23	22	14	39	1.91
7068504--7068757	102	2.5	102	90	0	382	29	20	12	37	1.90
7068642--7068826	65	2.8	65	90	3	293	32	20	11	35	1.89
7068930--7069001	37	1.9	37	82	0	90	26	22	11	40	1.87
7069352--7069823	109	4.4	109	88	2	632	32	26	19	21	1.97
7069352--7069981	109	5.9	106	84	7	608	32	25	20	21	1.98
7069352--7069981	218	3.0	212	82	7	676	32	25	20	21	1.98
7070442--7070542	36	2.8	37	79	8	116	39	12	14	32	1.85
7073410--7073451	20	2.0	21	90	4	68	35	14	9	40	1.78
7078972--7079000	2	14.5	2	100	0	58	51	0	0	48	1.00
7082943--7082981	14	2.8	14	100	0	78	30	15	20	33	1.94
7083283--7083337	2	27.5	2	100	0	110	50	0	0	49	1.00
7094246--7094400	60	2.6	59	77	9	149	34	20	21	23	1.97
7094316--7094440	60	2.1	60	83	0	151	32	24	20	21	1.98
7101152--7101249	44	2.1	47	90	7	157	28	10	21	39	1.86
7107297--7107515	106	2.1	106	100	0	438	26	13	9	50	1.71
7110962--7111083	7	15.6	7	67	25	50	72	0	21	5	1.11
7110974--7111087	16	7.1	16	72	17	67	72	0	20	6	1.11
7110971--7111015	17	2.8	16	83	6	56	71	2	20	6	1.20
7110962--7111038	32	2.5	30	80	12	84	72	1	20	5	1.11
7111011--7111081	24	2.9	24	76	12	72	73	0	21	5	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7112367--7113022	49	13.0	51	90	5	962	30	15	26	27	1.96
7112367--7113022	149	4.3	151	91	4	972	30	15	26	27	1.96
7112728--7113091	51	6.9	54	82	11	184	29	15	24	29	1.96
7118324--7118360	18	2.1	18	90	10	58	56	16	16	10	1.66
7119966--7120045	24	3.4	23	74	8	63	27	1	3	67	1.15
7123911--7123958	24	2.0	23	84	8	60	31	2	0	66	1.03
7125555--7125651	45	2.2	45	90	3	151	13	15	28	42	1.85
7125969--7125996	2	14.0	2	100	0	56	50	0	0	50	1.00
7129100--7129130	16	1.9	16	93	0	53	77	0	0	22	0.77
7132813--7132931	59	2.0	59	96	0	220	35	8	16	39	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65