genome.fa.s8620.2.7.7.80.10.50.1000.36.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008620.1 Hibiscus syriacus cultivar Beakdansim tig00111582_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  13158977

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   

This is table  36  of  64  ( 7674 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7251288--7251358	25	2.9	24	93	2	115	40	12	8	38	1.74
7251901--7251941	18	2.3	18	100	0	82	34	19	17	29	1.94
7255808--7255852	20	2.2	20	96	0	81	42	20	13	24	1.87
7256038--7256078	21	1.9	22	90	5	66	41	17	17	24	1.89
7257880--7257917	20	2.0	20	89	5	60	50	5	13	31	1.63
7259867--7259928	24	2.6	24	89	0	97	40	22	17	19	1.91
7259928--7260000	24	3.0	24	77	0	83	34	24	19	21	1.96
7265984--7266051	24	2.8	24	81	0	82	32	22	23	22	1.98
7268043--7268083	21	1.9	22	90	5	66	41	19	17	21	1.90
7268851--7268898	17	2.7	18	75	18	55	66	2	4	27	1.21
7269189--7269223	2	17.5	2	100	0	70	51	0	0	48	1.00
7269671--7269743	29	2.5	29	86	4	103	34	28	6	30	1.83
7276463--7276537	35	2.1	35	87	0	105	34	28	26	10	1.90
7276616--7276706	24	3.8	24	85	2	121	37	19	17	25	1.94
7276616--7276706	47	1.9	48	88	2	139	37	19	17	25	1.94
7280250--7280324	35	2.1	35	87	0	105	34	28	26	10	1.90
7280407--7280493	24	3.7	23	81	3	93	37	18	17	26	1.92
7280403--7280493	47	1.9	48	84	2	121	37	18	17	26	1.93
7284852--7284877	9	2.9	9	100	0	52	23	7	0	69	1.14
7285353--7285394	20	2.1	20	90	0	66	38	40	16	4	1.70
7285416--7285508	22	4.2	22	76	10	82	18	19	25	36	1.94
7285798--7285836	13	3.0	13	88	0	51	28	10	10	51	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7287224--7287380	31	5.0	32	75	12	146	32	20	17	29	1.96
7287224--7287380	63	2.5	63	80	6	183	32	20	17	29	1.96
7290126--7290195	18	3.9	18	88	0	95	25	31	22	20	1.98
7292382--7292435	2	27.0	2	100	0	108	50	0	0	50	1.00
7293490--7293536	13	3.5	13	82	5	58	38	23	21	17	1.93
7293496--7293538	14	3.1	14	86	3	61	34	20	25	18	1.96
7293609--7293673	19	3.4	19	97	0	121	18	23	29	29	1.98
7296157--7296183	14	1.9	14	100	0	54	59	0	0	40	0.98
7296572--7296642	29	2.4	29	97	0	133	23	9	25	40	1.85
7304824--7304881	30	1.9	30	85	3	80	43	3	3	50	1.36
7306331--7306388	29	2.0	30	83	6	75	50	0	1	48	1.11
7311740--7311798	3	19.7	3	100	0	118	67	0	0	32	0.91
7316363--7316416	18	3.0	18	69	0	54	35	22	5	37	1.77
7317722--7317820	9	11.0	9	76	4	83	48	17	6	28	1.70
7317740--7317819	18	4.4	18	87	6	117	50	17	5	27	1.67
7317712--7317765	27	2.0	27	85	0	72	48	22	3	25	1.67
7317722--7317819	36	2.7	36	85	3	117	48	17	5	28	1.68
7319044--7319108	30	2.2	31	80	8	80	36	18	6	38	1.76
7332737--7332905	8	21.1	8	96	0	212	25	7	24	42	1.81
7332761--7332905	4	36.2	4	90	0	227	25	4	24	44	1.73
7334458--7334795	131	2.6	131	83	2	381	25	33	16	25	1.96
7334988--7335096	3	36.0	3	98	1	209	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7341517--7341546	15	2.0	15	93	0	51	60	3	0	36	1.14
7341598--7341695	23	4.2	23	73	23	73	45	0	2	52	1.12
7341682--7341726	22	2.0	22	95	0	81	53	0	0	46	1.00
7342149--7342175	2	13.5	2	100	0	54	48	0	0	51	1.00
7355436--7355495	29	2.1	29	96	0	111	50	5	28	16	1.66
7357904--7357954	22	2.3	22	93	0	93	19	27	17	35	1.94
7359893--7359963	32	2.2	32	85	5	90	14	0	28	57	1.37
7359907--7359967	15	3.9	15	74	19	54	9	0	29	60	1.29
7360079--7360110	16	2.0	16	100	0	64	18	18	6	56	1.62
7360373--7360410	18	2.1	18	90	0	58	34	7	5	52	1.53
7371999--7372090	27	3.4	26	86	3	112	30	18	32	18	1.95
7375355--7375382	2	14.0	2	100	0	56	50	0	0	50	1.00
7375780--7375839	21	3.0	20	83	13	79	33	0	1	65	1.03
7375780--7375839	9	5.8	11	73	26	60	33	0	1	65	1.03
7377197--7377380	90	2.0	91	88	3	273	21	28	21	28	1.99
7378148--7378210	28	2.2	28	78	10	74	60	14	17	7	1.57
7378203--7378231	15	2.0	15	93	6	51	75	3	20	0	0.94
7383776--7383953	54	3.3	54	78	7	139	34	20	22	23	1.97
7383812--7383970	54	2.9	55	81	4	180	35	20	20	23	1.96
7383812--7384039	108	2.1	110	82	4	275	33	19	21	25	1.97
7393385--7393424	19	2.2	18	86	13	55	57	0	7	35	1.27
7394473--7394560	46	1.9	46	85	0	122	23	20	10	45	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7394910--7395510	54	11.1	54	84	2	760	30	17	18	33	1.94
7398991--7399059	23	3.0	23	82	0	84	28	26	24	20	1.99
7399075--7399292	103	2.1	103	96	0	400	36	23	13	26	1.92
7401777--7401816	20	2.0	21	90	5	64	25	20	20	35	1.96
7412472--7412531	31	1.9	31	89	0	93	23	21	16	38	1.93
7414442--7414515	31	2.4	31	93	0	121	35	13	24	27	1.93
7421953--7422069	59	2.0	59	89	0	180	37	16	11	35	1.84
7422094--7422126	15	2.1	16	88	5	50	39	3	6	51	1.42
7426753--7426810	29	2.0	29	82	0	71	17	36	27	18	1.94
7426855--7426947	10	8.3	10	67	21	51	22	29	37	10	1.88
7426894--7426926	14	2.4	14	94	0	57	21	33	39	6	1.78
7426862--7426945	23	3.6	23	73	20	84	23	29	35	10	1.89
7427078--7427130	24	2.3	24	80	6	65	22	24	16	35	1.95
7427477--7427592	43	2.7	42	85	7	137	40	0	11	47	1.45
7427599--7427716	47	2.5	47	85	8	143	38	0	11	50	1.38
7427663--7427745	42	2.1	39	84	11	105	42	0	12	45	1.41
7427835--7427874	21	1.9	21	94	0	71	27	2	15	55	1.53
7428057--7428162	30	3.5	30	84	2	131	40	0	12	47	1.41
7428216--7428249	15	2.2	16	94	5	61	38	0	5	55	1.24
7430509--7430611	11	8.7	11	72	16	73	43	10	2	42	1.54
7430513--7430611	37	2.7	37	83	10	139	42	11	3	43	1.55
7430513--7430602	26	3.6	25	82	13	105	42	10	3	44	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7430721--7431014	26	12.0	25	74	13	197	44	9	1	43	1.45
7430510--7431044	124	4.4	120	72	16	386	44	10	2	42	1.53
7430408--7430879	227	2.0	223	91	6	674	43	10	4	41	1.57
7431190--7431268	14	5.9	14	73	16	69	40	12	1	45	1.50
7434345--7434460	44	2.4	48	79	9	123	50	10	1	37	1.47
7434457--7434505	21	2.3	21	85	3	71	53	18	0	28	1.45
7434478--7434567	35	2.7	33	84	6	101	55	18	0	25	1.43
7434422--7434549	56	2.4	53	81	12	170	55	16	0	28	1.41
7435952--7436206	36	6.7	39	78	11	153	44	3	7	44	1.50
7435958--7436230	39	7.2	36	76	15	184	44	4	7	43	1.51
7435983--7436267	37	7.8	36	79	13	273	44	4	7	44	1.50
7436246--7436318	40	1.9	38	83	10	96	42	1	4	52	1.29
7436354--7436382	5	6.0	5	92	8	51	20	0	0	79	0.74
7437350--7437401	20	2.6	20	87	0	77	25	9	5	59	1.51
7437468--7437546	23	3.2	24	78	12	81	16	7	0	75	1.01
7437484--7437527	22	2.0	23	90	4	72	15	6	0	77	0.97
7437534--7437620	14	6.2	14	67	15	54	21	4	0	73	1.01
7442346--7442574	127	1.8	128	92	1	390	34	24	23	18	1.96
7444310--7444364	3	19.7	3	78	10	55	34	0	0	65	0.93
7444310--7444364	8	6.6	9	81	12	55	34	0	0	65	0.93
7444315--7444357	22	2.0	22	86	9	61	32	0	0	67	0.91
7450127--7450335	75	2.9	74	79	7	205	52	13	5	27	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7451230--7451299	23	3.0	23	83	6	88	57	24	12	5	1.57
7451555--7451586	14	2.1	16	88	11	50	50	18	15	15	1.79
7455481--7455558	2	39.5	2	72	16	56	48	2	2	46	1.29
7455487--7455676	19	10.8	19	67	22	105	48	3	3	45	1.34
7455518--7455589	18	3.9	18	83	8	92	48	4	1	45	1.30
7455754--7455829	19	3.9	20	82	5	93	44	1	28	25	1.62
7456021--7456144	2	62.5	2	68	13	69	45	1	6	46	1.38
7456302--7456331	2	15.0	2	100	0	60	50	0	0	50	1.00
7456735--7456833	18	5.3	19	91	3	87	50	4	2	43	1.32
7456745--7456831	2	42.0	2	90	6	138	49	2	1	47	1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64