genome.fa.s8620.2.7.7.80.10.50.1000.58.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008620.1 Hibiscus syriacus cultivar Beakdansim tig00111582_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  13158977

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   

This is table  58  of  64  ( 7674 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11773376--11773439	21	3.1	21	95	2	112	54	3	3	39	1.32
11773375--11773436	10	6.0	10	77	5	61	56	3	3	37	1.32
11775893--11776175	143	2.0	138	93	5	478	32	10	26	30	1.90
11781711--11781778	33	2.1	33	100	0	136	44	10	11	33	1.75
11787191--11787215	11	2.3	11	100	0	50	48	0	0	52	1.00
11792845--11792923	38	2.1	38	84	9	101	45	7	16	30	1.75
11794785--11794833	23	2.1	23	85	7	64	26	2	14	57	1.48
11801653--11801703	20	2.5	21	81	6	52	9	17	0	72	1.11
11806870--11807001	47	2.7	49	75	17	125	4	16	0	78	0.97
11806873--11806984	43	2.6	41	81	11	109	3	17	0	77	0.96
11806885--11806976	35	2.5	37	84	10	118	2	19	1	77	0.94
11806870--11807008	42	3.2	42	79	10	106	4	16	1	77	1.00
11806870--11807041	9	18.3	9	72	14	89	4	15	1	77	1.01
11806895--11807042	51	3.0	50	80	14	150	3	16	2	77	1.00
11806897--11807033	6	20.7	6	71	22	64	2	16	2	78	0.98
11806897--11807003	21	5.2	20	77	12	101	2	16	0	79	0.90
11808170--11808226	28	2.0	28	100	0	114	15	21	14	49	1.80
11808643--11808687	21	2.1	21	95	0	81	57	4	15	22	1.56
11811934--11811986	2	26.5	2	100	0	106	50	0	0	49	1.00
11813133--11813179	24	2.0	24	82	0	58	55	0	2	42	1.12
11814014--11814038	11	2.3	11	100	0	50	8	0	16	76	1.02
11814517--11814551	3	12.0	3	93	6	63	31	0	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11820764--11820841	13	6.0	13	75	0	66	29	16	16	37	1.91
11820764--11820834	26	2.7	26	93	0	115	30	16	16	35	1.92
11820846--11821035	85	2.2	85	87	3	267	30	21	16	32	1.95
11821083--11821110	2	14.0	2	100	0	56	50	0	0	50	1.00
11823407--11823480	38	1.9	38	86	8	105	1	28	9	60	1.36
11823419--11823499	38	2.2	39	84	6	105	1	29	8	60	1.34
11823482--11823559	25	3.0	25	67	10	68	5	39	6	48	1.51
11829244--11829293	23	2.2	23	82	7	57	58	14	2	26	1.47
11832504--11832565	27	2.3	26	91	5	97	69	0	20	9	1.16
11841077--11841226	9	14.3	11	72	22	51	80	0	16	3	0.84
11841070--11841218	16	9.5	15	75	15	108	81	0	15	3	0.82
11841088--11841210	20	5.8	21	71	17	94	82	0	14	3	0.80
11841087--11841226	7	19.7	7	72	19	80	81	0	15	3	0.82
11841071--11841218	20	6.7	22	71	20	89	81	0	15	3	0.83
11841142--11841216	1	75.0	1	75	0	69	88	0	12	0	0.53
11841070--11841218	62	2.3	63	78	12	162	81	0	15	3	0.82
11841101--11841218	23	5.0	23	77	7	114	83	0	13	3	0.78
11841077--11841218	42	3.6	39	72	17	96	80	0	16	2	0.82
11841084--11841218	24	5.8	23	75	15	118	81	0	15	2	0.81
11842207--11842416	44	4.9	43	81	6	219	35	12	22	29	1.91
11842221--11842426	42	4.7	43	82	6	229	34	13	20	31	1.91
11842207--11842428	86	2.6	86	87	2	311	35	13	21	30	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11843552--11843757	102	2.0	103	96	2	380	39	18	15	26	1.91
11844494--11844911	134	3.1	132	81	8	413	33	21	15	30	1.94
11846100--11846642	273	2.0	269	96	3	1009	31	9	17	42	1.80
11848221--11848269	23	2.1	23	100	0	98	20	22	24	32	1.98
11849563--11849589	7	3.9	7	100	0	54	55	0	0	44	0.99
11852242--11852292	20	2.4	21	90	9	77	76	1	0	21	0.88
11852242--11852290	11	4.5	11	77	7	55	79	2	0	18	0.83
11853679--11853736	24	2.4	24	79	20	68	48	0	0	51	1.00
11859345--11859386	20	2.0	20	82	17	50	38	4	0	57	1.20
11860045--11860086	15	2.6	16	81	11	50	47	2	0	50	1.14
11861351--11861375	12	2.1	12	100	0	50	40	0	60	0	0.97
11876823--11876848	7	3.7	7	100	0	52	57	0	0	42	0.98
11887810--11887856	22	2.1	22	92	0	76	38	6	10	44	1.65
11888142--11888192	25	2.0	25	100	0	102	33	19	11	35	1.88
11891019--11891097	38	2.2	37	84	6	99	58	7	7	26	1.53
11893560--11893691	51	2.6	51	82	7	135	17	31	32	18	1.94
11893866--11893918	18	2.9	18	85	0	61	24	16	5	52	1.65
11893859--11893921	9	6.9	9	74	1	54	26	17	4	50	1.66
11893859--11893921	27	2.3	27	86	2	81	26	17	4	50	1.66
11894248--11894382	55	2.6	53	88	5	195	48	2	2	45	1.29
11895341--11895380	19	2.1	19	90	0	62	25	15	25	35	1.94
11896626--11896696	36	2.0	36	85	0	97	19	16	16	46	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11896892--11896954	23	2.7	23	85	0	81	41	12	14	31	1.83
11897426--11897677	127	2.0	124	92	2	414	41	7	15	36	1.75
11899198--11899223	13	2.0	13	100	0	52	38	7	23	30	1.83
11900446--11900470	13	1.9	13	100	0	50	0	0	12	88	0.53
11902692--11902723	14	2.3	14	94	0	55	21	18	43	15	1.87
11902966--11903047	2	41.5	2	97	2	157	48	0	0	51	1.00
11903273--11903382	20	5.4	20	83	2	139	39	18	20	21	1.93
11903273--11903400	40	3.2	40	83	3	150	37	19	21	21	1.94
11903579--11903644	22	3.0	22	84	4	89	24	37	15	22	1.92
11904010--11904039	15	2.0	15	93	0	51	13	10	36	40	1.78
11904039--11904076	20	1.9	20	100	0	76	10	15	21	52	1.72
11904043--11904086	20	2.2	20	83	0	52	15	13	20	50	1.78
11905968--11906110	20	7.5	20	80	9	156	40	20	19	18	1.92
11905968--11906138	93	1.8	93	93	0	297	42	19	19	18	1.90
11906155--11906203	20	2.5	20	89	0	71	22	20	22	34	1.97
11906688--11906729	21	2.2	19	87	12	59	21	35	19	23	1.96
11906682--11906765	42	2.0	42	83	4	107	21	40	16	21	1.91
11908283--11908378	33	2.8	33	90	3	147	42	20	22	13	1.87
11908389--11908455	20	3.7	19	73	20	72	13	22	19	44	1.85
11908393--11908488	33	2.9	34	88	3	140	13	23	20	41	1.88
11908460--11908548	20	4.4	20	85	2	126	16	20	25	37	1.93
11910979--11911032	24	2.2	24	93	0	90	40	20	18	20	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11911872--11911918	20	2.3	20	92	0	76	21	19	27	31	1.97
11911905--11912038	20	6.7	20	82	1	169	23	19	17	40	1.91
11911905--11912038	61	2.2	60	85	1	169	23	19	17	40	1.91
11911905--11912053	40	3.7	41	79	6	151	25	18	17	38	1.93
11912035--11912080	21	2.2	21	88	0	65	41	17	23	17	1.90
11913524--11913564	17	2.4	17	91	0	64	14	26	31	26	1.95
11913549--11913619	32	2.2	32	85	9	92	23	26	25	23	2.00
11915771--11915828	24	2.4	24	76	0	62	27	13	18	39	1.89
11915897--11916068	57	3.0	57	89	0	254	15	18	30	35	1.92
11916990--11917128	69	2.0	70	91	1	226	35	12	15	35	1.86
11922218--11922273	20	2.9	19	79	7	60	23	0	7	69	1.12
11926195--11926240	16	2.9	16	90	0	74	39	17	2	41	1.62
11929655--11929742	20	4.3	20	78	2	104	34	22	17	26	1.96
11929646--11929736	41	2.2	41	86	0	119	34	20	15	29	1.94
11929736--11929939	20	10.1	20	80	11	163	41	24	14	20	1.89
11929736--11929939	60	3.4	59	81	13	220	41	24	14	20	1.89
11929736--11929939	40	5.0	41	81	12	208	41	24	14	20	1.89
11933039--11933080	3	14.0	3	85	9	59	61	0	0	38	0.96
11933039--11933079	20	2.0	20	95	4	73	60	0	0	39	0.96
11933305--11934364	113	9.3	113	90	2	1385	30	19	13	36	1.91
11935187--11935746	94	6.0	94	93	2	888	36	20	14	29	1.91
11936747--11936790	7	6.0	7	84	10	61	0	15	0	84	0.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11936755--11936796	10	4.1	10	87	6	57	0	16	0	83	0.65
11948057--11948115	23	2.7	21	73	21	57	50	0	0	49	1.00
11948060--11948116	24	2.5	22	72	22	55	50	0	0	49	1.00
11949438--11949483	3	15.0	3	82	13	58	63	0	0	36	0.95
11949437--11949493	22	2.6	23	80	8	73	64	0	0	35	0.93
11949438--11949483	19	2.5	19	86	13	69	63	0	0	36	0.95
11949910--11949960	3	17.0	3	76	15	52	37	0	0	62	0.95
11949914--11949960	14	3.4	14	82	8	60	38	0	0	61	0.96
11951003--11951066	15	4.4	14	75	14	51	28	1	3	67	1.15
11951100--11951140	21	2.0	21	85	9	57	39	0	0	60	0.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64