genome.fa.s8620.2.7.7.80.10.50.1000.37.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008620.1 Hibiscus syriacus cultivar Beakdansim tig00111582_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  13158977

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   

This is table  37  of  64  ( 7674 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7456906--7456966	14	4.4	14	82	0	68	49	27	0	22	1.50
7456919--7456966	7	6.9	7	85	0	60	47	27	0	25	1.52
7457016--7457040	13	1.9	13	100	0	50	16	8	32	44	1.76
7457260--7457291	15	2.1	16	88	11	50	34	0	0	65	0.93
7457301--7457397	19	5.0	20	74	13	87	47	6	6	40	1.54
7457356--7457452	48	2.0	49	83	2	124	50	10	6	32	1.61
7457900--7458007	21	5.1	21	77	14	89	50	24	0	25	1.50
7457904--7458034	7	18.7	7	75	0	73	48	26	0	24	1.51
7457920--7458034	21	5.5	21	79	4	115	50	26	0	23	1.49
7458377--7458471	48	2.0	49	85	2	129	48	6	8	36	1.59
7458468--7458514	7	6.7	7	80	9	51	55	29	0	14	1.40
7458468--7458518	21	2.4	21	86	0	75	54	29	0	15	1.41
7458685--7458731	14	3.7	14	71	26	50	51	4	0	44	1.21
7458683--7458732	23	2.1	24	96	3	93	48	4	0	48	1.20
7459001--7459071	16	4.4	16	98	0	124	39	14	28	18	1.89
7460251--7460307	27	2.1	27	100	0	114	35	17	28	19	1.94
7461338--7461372	2	17.5	2	93	0	61	54	0	0	45	0.99
7461362--7461435	29	2.6	29	80	4	78	56	8	5	29	1.51
7461812--7461913	34	2.9	36	85	7	154	28	14	13	43	1.84
7462461--7463184	105	7.0	104	89	3	1014	22	17	25	33	1.96
7462460--7463184	207	3.5	205	87	5	985	23	17	25	33	1.96
7462461--7463192	312	2.4	311	88	3	1114	22	17	25	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7464041--7464271	99	2.3	99	86	7	320	40	15	18	26	1.90
7464033--7464270	35	6.9	36	80	13	270	39	14	18	26	1.90
7464034--7464292	134	1.9	135	82	7	328	40	15	18	25	1.90
7464772--7464807	18	2.0	18	88	0	54	41	30	8	19	1.81
7465213--7465280	22	3.2	22	81	12	88	26	14	23	35	1.94
7465208--7465269	19	3.1	19	82	11	70	22	12	24	40	1.89
7465764--7465792	11	2.5	12	88	11	51	6	17	20	55	1.65
7465933--7466004	8	9.1	8	71	10	51	0	12	8	79	0.94
7469074--7469111	17	2.2	18	90	4	60	65	2	5	26	1.27
7469087--7469142	22	2.5	22	80	5	69	66	1	3	28	1.19
7469073--7469160	39	2.2	38	78	13	86	65	2	5	26	1.26
7469184--7469222	2	20.5	2	84	10	55	53	0	0	46	1.00
7469184--7469259	30	2.5	29	79	12	82	57	3	0	38	1.17
7469621--7469747	37	3.5	35	82	5	130	34	11	11	42	1.77
7469647--7469748	34	2.9	34	86	4	141	32	12	10	44	1.77
7475763--7475871	32	3.5	31	74	10	96	30	16	15	37	1.90
7480812--7480919	31	3.5	31	81	6	137	31	18	13	36	1.90
7480812--7480935	31	4.0	31	78	5	133	30	18	16	34	1.93
7497380--7497417	14	2.7	14	91	0	58	2	47	0	50	1.15
7498488--7498547	19	3.2	19	95	4	113	20	11	21	46	1.82
7508063--7508134	24	3.1	24	63	25	64	34	9	23	31	1.87
7508040--7508146	45	2.4	45	87	1	153	37	7	24	30	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7511108--7511629	75	7.0	74	76	5	406	33	16	12	37	1.86
7511301--7511629	36	8.8	38	75	7	278	32	16	13	37	1.88
7511309--7511629	113	2.8	113	90	0	509	33	15	13	37	1.87
7512350--7512405	21	2.7	21	94	0	103	30	21	28	19	1.98
7512855--7512917	31	2.1	31	90	3	101	38	3	22	36	1.70
7513173--7513244	23	3.1	23	72	18	76	20	19	26	33	1.97
7513172--7513247	24	3.2	24	73	17	86	22	18	25	34	1.96
7516293--7516333	21	2.0	21	100	0	82	26	24	24	24	2.00
7516627--7516752	54	2.2	56	80	6	139	28	29	12	29	1.93
7518322--7518351	11	2.7	11	89	0	51	16	0	6	76	0.99
7520748--7520783	11	3.3	11	88	0	54	30	2	13	52	1.55
7520702--7520863	2	81.5	2	67	15	68	45	1	6	46	1.39
7520960--7520992	9	3.8	9	88	8	50	54	3	6	36	1.41
7521020--7521071	18	2.8	19	85	8	72	46	5	0	48	1.26
7521020--7521078	18	3.2	18	80	9	57	47	5	0	47	1.24
7521056--7521134	28	2.9	26	83	7	86	45	5	5	44	1.47
7521033--7521135	13	7.3	13	72	17	73	46	4	3	44	1.43
7521091--7521281	78	2.4	79	85	8	233	46	3	6	43	1.46
7521180--7521212	15	2.2	15	100	0	66	45	6	6	42	1.53
7521376--7521414	14	2.7	15	80	11	55	48	30	2	17	1.61
7524356--7524400	22	2.1	22	91	4	74	33	4	20	42	1.72
7524367--7524408	11	3.7	11	83	3	57	35	2	19	42	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7526637--7526896	132	2.0	132	87	6	375	28	18	17	35	1.94
7528130--7528188	22	2.7	22	71	21	61	30	15	10	44	1.79
7537620--7537658	20	2.0	20	100	0	78	30	10	25	33	1.89
7537621--7537666	20	2.3	20	92	0	74	30	13	23	32	1.93
7537640--7537781	57	2.5	56	93	2	230	28	14	22	34	1.93
7537751--7537845	20	4.7	20	80	3	93	23	13	30	32	1.93
7543132--7543174	21	2.1	21	87	8	63	72	2	0	25	0.97
7543132--7543180	18	2.5	19	80	12	55	69	2	0	28	1.00
7553220--7553327	53	2.0	53	100	0	216	31	14	9	44	1.77
7553219--7553303	26	3.2	26	64	26	70	29	16	10	43	1.81
7556054--7556113	19	3.2	19	92	0	93	38	6	6	48	1.56
7565138--7565181	21	2.1	21	83	8	54	20	20	15	43	1.88
7568701--7568813	34	3.2	35	81	11	131	33	18	11	36	1.87
7568869--7569045	66	2.7	65	89	4	259	25	23	15	35	1.94
7568921--7569044	36	3.6	36	71	14	118	24	22	16	36	1.94
7570895--7570921	12	2.2	12	100	0	54	40	7	7	44	1.60
7570888--7570924	12	2.8	14	80	16	51	40	8	5	45	1.56
7572581--7572625	14	3.3	14	81	3	56	42	4	8	44	1.56
7576099--7576135	17	2.2	17	86	13	51	29	8	13	48	1.71
7578510--7578585	21	3.6	21	100	0	152	22	15	28	32	1.95
7580745--7580824	40	2.0	40	92	0	133	21	15	2	61	1.45
7581637--7581668	13	2.5	13	100	0	64	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7585371--7585436	15	4.4	15	84	0	87	15	63	13	7	1.50
7585362--7585428	30	2.4	28	87	9	93	14	61	14	8	1.56
7585375--7585433	30	2.0	30	93	0	100	16	61	13	8	1.56
7591800--7591845	3	15.3	3	95	0	83	67	2	0	30	1.03
7591843--7591898	2	28.0	2	100	0	112	50	0	0	50	1.00
7591935--7591965	3	10.7	3	93	6	55	70	0	0	29	0.87
7602316--7602373	21	2.7	22	76	15	59	63	3	10	22	1.40
7611575--7611607	7	4.9	7	92	7	59	72	0	0	27	0.85
7611575--7611612	14	2.8	13	88	7	58	71	2	0	26	1.00
7611610--7611643	2	17.0	2	100	0	68	50	0	0	50	1.00
7611679--7611765	23	3.9	22	72	17	72	70	3	3	22	1.18
7611757--7611790	2	17.0	2	93	0	59	50	2	0	47	1.16
7613665--7613690	2	13.0	2	100	0	52	50	0	0	50	1.00
7626101--7626146	23	2.0	23	100	0	92	17	30	8	43	1.79
7630146--7630237	23	3.8	23	79	13	112	45	0	1	53	1.07
7630142--7630277	14	10.6	14	68	19	75	43	0	0	55	1.04
7630112--7630266	26	6.1	26	75	17	130	42	0	1	56	1.07
7630148--7630316	51	3.0	53	78	18	207	44	0	1	54	1.07
7630184--7630324	63	2.2	64	91	3	221	43	0	1	54	1.08
7630117--7630324	114	1.8	114	93	2	364	43	0	1	55	1.08
7630298--7630360	31	2.0	33	84	6	85	39	1	1	57	1.18
7630120--7630371	114	2.2	112	82	8	319	42	0	1	55	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7630991--7631050	31	1.9	31	96	0	111	43	8	6	41	1.61
7633748--7633854	51	2.1	51	84	6	137	13	35	29	21	1.91
7634101--7634141	18	2.3	18	87	4	57	29	4	4	60	1.38
7648027--7648062	16	2.2	16	100	0	72	30	22	0	47	1.52
7648160--7648216	27	2.1	27	90	6	89	19	7	35	38	1.79
7648981--7649298	167	1.9	171	96	2	599	37	12	9	40	1.75
7656364--7656452	44	2.0	44	100	0	178	40	4	8	46	1.56
7679846--7680038	95	2.0	95	95	0	350	24	27	16	31	1.96
7690099--7690128	2	15.5	2	93	6	53	50	0	0	50	1.00
7696907--7696945	17	2.3	17	86	0	51	66	2	0	30	1.05

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64