genome.fa.s8756.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008756.1 Hibiscus syriacus cultivar Beakdansim tig00111848_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4584045

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   

This is table  1  of  21  ( 2443 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11921--11993	18	4.0	18	77	10	76	43	4	8	43	1.53
11921--11981	19	3.2	18	77	15	61	45	3	6	44	1.46
13307--13333	11	2.5	11	100	0	54	74	0	0	25	0.83
19793--19879	42	2.1	41	91	2	138	26	4	11	57	1.53
24908--25137	122	1.9	124	84	3	313	36	11	19	32	1.87
26645--26761	15	8.1	15	80	7	125	38	7	19	34	1.81
26651--26738	43	2.1	42	95	2	158	37	6	20	35	1.79
26653--26745	28	3.2	28	95	4	159	35	6	20	37	1.78
26653--26761	29	3.8	29	91	6	168	37	7	19	35	1.80
27254--27314	27	2.4	24	71	21	61	72	3	4	19	1.18
27262--27315	28	2.0	28	89	10	85	74	3	5	16	1.16
27302--27326	12	2.1	12	100	0	50	84	0	0	16	0.63
27260--27322	28	2.3	27	81	13	76	74	3	4	17	1.12
27372--27410	9	3.9	11	81	18	50	76	0	0	23	0.78
27371--27417	17	3.0	15	85	14	60	78	0	0	21	0.75
28838--28995	84	1.9	85	85	1	219	27	20	22	29	1.98
28999--29093	36	2.6	36	82	12	113	27	6	22	44	1.77
29131--29184	22	2.5	21	82	8	56	40	14	22	22	1.90
29192--29349	37	5.2	29	67	21	74	34	11	20	34	1.88
29326--29411	37	2.4	36	86	5	111	45	13	17	23	1.84
29298--29710	102	4.1	102	88	1	578	37	12	19	30	1.89
29427--29710	36	8.2	36	66	18	113	36	13	20	29	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29298--29666	102	3.6	102	91	0	587	36	12	19	31	1.89
29919--30087	82	2.0	84	85	2	225	21	19	25	33	1.97
30798--30860	32	2.0	32	87	0	90	41	20	7	30	1.81
30798--30888	31	2.8	32	81	5	103	39	19	9	30	1.85
31812--31949	69	2.0	69	92	0	231	26	15	22	36	1.93
32021--32072	13	4.2	13	86	13	74	1	15	3	78	0.98
32020--32070	26	2.0	25	96	3	93	3	15	3	76	1.08
38130--38182	23	2.2	24	86	3	72	9	18	11	60	1.57
41048--41077	9	3.3	9	100	0	60	80	0	0	20	0.72
41126--41173	20	2.7	17	82	17	62	72	0	0	27	0.84
42309--42352	22	2.0	22	86	4	61	45	0	2	52	1.13
42353--42431	25	3.1	26	79	12	85	51	2	1	44	1.23
42431--42506	20	3.6	21	84	11	77	46	0	1	52	1.08
42431--42505	12	5.8	13	75	12	59	46	0	1	52	1.09
42446--42559	24	4.7	23	71	21	83	47	0	2	50	1.15
43473--43636	3	54.7	3	88	11	248	0	34	0	65	0.93
45487--45547	30	2.2	28	83	16	76	73	1	3	21	1.06
45498--45569	31	2.4	31	83	6	85	75	1	4	19	1.05
45583--45616	8	4.4	8	85	7	52	88	0	0	11	0.52
45658--45691	5	6.8	5	96	0	59	76	0	2	20	0.92
46930--47006	31	2.4	32	85	10	104	48	3	1	46	1.28
46884--47369	37	13.3	37	75	14	361	46	5	3	44	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46884--47369	76	6.6	73	78	14	382	46	5	3	44	1.45
46868--47340	113	4.3	112	78	13	405	46	5	3	44	1.42
47931--48091	33	4.8	33	79	8	182	31	9	13	45	1.75
47950--48081	67	1.9	70	89	4	207	28	9	12	49	1.72
47886--48091	34	5.9	34	76	14	172	29	9	15	46	1.76
48097--48184	37	2.3	37	86	7	124	37	13	20	28	1.91
48112--48224	61	1.9	59	83	7	147	38	16	20	24	1.93
48260--48512	36	7.1	36	83	6	302	41	13	18	26	1.88
48259--48512	109	2.4	104	84	5	321	41	13	18	26	1.87
49837--50075	95	2.5	95	84	4	284	30	17	17	34	1.93
53937--54018	43	1.9	43	83	14	107	67	3	6	23	1.30
53949--54001	19	2.8	20	74	25	60	67	1	3	26	1.17
53950--54006	13	4.5	12	76	20	62	70	1	3	24	1.13
54048--54072	8	3.1	8	100	0	50	88	0	0	12	0.53
55207--55271	3	20.7	3	78	12	60	72	1	0	26	0.94
55205--55280	26	2.8	27	90	4	109	72	1	0	26	0.93
55208--55280	22	3.4	23	80	16	86	71	1	0	27	0.95
55274--55353	38	2.1	38	81	9	90	51	7	3	37	1.48
55321--55771	37	12.6	34	82	8	223	45	5	3	45	1.41
55361--55740	37	10.5	36	83	7	450	44	4	3	47	1.40
55319--55734	149	2.9	147	84	7	503	44	5	3	46	1.42
55835--55908	2	39.0	2	86	10	111	54	0	0	45	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56139--56191	27	2.0	27	85	7	72	35	11	5	47	1.63
56896--56921	11	2.4	11	100	0	52	65	0	0	34	0.93
56937--56973	17	2.2	17	90	0	56	78	0	0	21	0.75
56937--57056	27	4.3	29	75	9	90	73	2	4	20	1.12
57064--57123	15	3.7	15	74	20	57	71	0	10	18	1.13
58554--59624	84	12.8	84	85	1	1252	24	18	24	33	1.97
60721--60978	93	2.7	92	81	7	268	30	17	17	34	1.93
63631--63688	30	1.9	30	92	0	98	65	3	6	24	1.33
63638--63715	30	2.7	30	80	9	92	67	2	5	24	1.23
63756--63797	7	6.0	7	83	10	59	80	0	2	16	0.81
67770--67838	29	2.4	30	85	4	88	46	1	13	39	1.52
67788--67839	15	3.5	15	78	5	52	42	3	17	36	1.67
68004--68079	22	3.5	21	77	8	64	43	1	0	55	1.08
68032--68087	18	2.9	18	73	21	51	42	0	0	57	0.99
68063--68148	34	2.5	34	77	17	88	44	1	1	53	1.15
68150--68214	28	2.4	28	80	14	82	50	3	0	46	1.17
68270--68325	14	3.7	15	77	13	62	55	0	0	44	0.99
68267--68345	22	3.5	23	76	10	74	51	0	0	48	1.00
68240--68343	30	3.3	31	81	12	106	50	0	0	49	1.07
68268--68345	23	3.5	22	78	16	72	52	0	0	47	1.00
68553--68633	41	2.0	41	95	0	144	51	16	11	20	1.74
69442--69508	26	2.6	26	95	0	116	26	10	14	47	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72717--72746	2	15.0	2	100	0	60	50	0	0	50	1.00
75132--75181	3	17.0	3	87	4	75	34	2	0	64	1.05
80869--80901	16	2.1	16	100	0	66	24	18	6	51	1.68
88252--88289	8	4.6	8	87	6	58	84	0	15	0	0.63
88234--88279	15	3.0	16	81	15	53	76	0	19	4	0.96
88239--88289	24	2.1	25	85	10	70	80	0	17	1	0.81
88252--88289	17	2.3	16	90	4	58	84	0	15	0	0.63
89870--90302	110	3.7	118	81	9	444	38	14	19	27	1.90
90645--90696	3	18.0	3	80	7	63	36	1	0	61	1.07
92040--92112	30	2.4	29	74	14	76	27	4	4	64	1.30
92185--92217	2	17.0	2	87	6	50	54	0	0	45	0.99
97768--97881	60	1.9	60	82	7	142	36	7	9	45	1.66
104592--104652	32	1.9	32	83	9	81	21	9	9	59	1.58
109111--109140	15	2.0	15	93	0	51	36	23	6	33	1.81
109133--109261	68	2.0	63	83	10	161	31	17	13	38	1.87
109132--109255	35	3.7	34	74	11	107	30	18	12	37	1.89
109395--109794	126	3.1	127	81	7	407	29	27	19	24	1.98
109879--109915	3	12.3	3	100	0	74	35	0	0	64	0.94
113161--113193	12	2.6	13	85	9	50	69	6	0	24	1.10
118428--118465	15	2.5	15	91	4	58	28	21	13	36	1.91
125108--125158	26	2.0	26	88	7	77	27	23	21	27	1.99
129112--129146	16	2.2	16	89	0	52	77	0	0	22	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
140775--140808	15	2.3	15	89	0	50	8	17	50	23	1.74
141320--141385	30	2.2	30	78	5	71	36	7	7	48	1.60
143254--143342	4	22.8	4	85	4	65	50	19	0	30	1.48
143254--143302	20	2.5	20	89	0	80	51	28	0	20	1.48
143300--143332	2	16.5	2	100	0	66	51	0	0	48	1.00
155046--155081	16	2.3	16	95	4	65	77	0	16	5	0.94
157528--157569	19	2.1	20	86	8	59	76	11	4	7	1.15
158016--158045	12	2.5	12	94	0	51	70	0	13	16	1.18
158565--158596	16	2.0	16	93	0	55	71	0	12	15	1.14
161748--161791	21	2.1	21	91	8	72	29	13	20	36	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21