genome.fa.s8756.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008756.1 Hibiscus syriacus cultivar Beakdansim tig00111848_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4584045

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   

This is table  5  of  21  ( 2443 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
875169--875222	20	2.7	20	88	0	81	37	24	24	14	1.93
875225--875315	14	5.9	14	70	20	65	49	21	16	12	1.78
875209--875320	33	3.4	33	93	1	190	48	21	17	12	1.80
875335--875442	14	6.2	19	69	19	67	12	21	22	43	1.86
875349--875406	14	3.9	14	79	16	71	10	17	24	48	1.78
875335--875422	32	2.7	33	94	3	160	12	19	21	46	1.82
875407--875450	20	2.2	20	88	4	63	18	25	20	36	1.95
875943--875987	18	2.5	18	88	0	72	13	15	44	26	1.83
877227--877266	19	2.1	19	85	0	53	47	22	17	12	1.81
877235--877282	20	2.5	19	89	3	69	35	27	18	18	1.95
877539--877581	22	2.0	22	90	0	68	20	16	41	20	1.90
877747--877881	20	6.7	20	80	7	130	25	17	23	33	1.96
877747--877884	61	2.3	61	87	0	204	24	17	23	34	1.96
878707--878740	17	2.0	17	88	0	50	47	14	14	23	1.82
878601--878888	144	2.0	144	100	0	576	41	10	9	38	1.72
878851--878884	17	2.0	17	88	0	50	47	14	14	23	1.82
879657--879774	44	2.7	44	84	2	148	33	20	17	28	1.96
879747--879919	87	2.0	88	81	6	208	35	19	15	30	1.92
891929--891982	2	27.0	2	100	0	108	50	0	0	50	1.00
892287--892705	207	2.0	211	98	1	810	40	16	5	37	1.72
893016--893133	55	2.1	55	82	3	148	25	17	17	38	1.92
893094--893175	42	2.0	42	97	0	155	24	23	17	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
901859--901883	13	1.9	13	100	0	50	12	8	0	80	0.92
903516--903556	21	2.0	21	90	0	64	29	17	19	34	1.94
906435--906546	41	2.7	42	92	2	190	23	21	22	33	1.98
906472--906542	21	3.4	21	72	16	76	21	22	22	33	1.97
906630--906670	6	7.2	6	91	8	68	34	48	17	0	1.47
907663--907710	25	1.9	25	100	0	96	33	16	8	41	1.78
910585--910627	22	2.0	22	86	9	61	53	0	16	30	1.43
910780--910853	22	3.6	20	72	23	57	54	5	5	35	1.47
910775--910852	39	2.0	39	87	0	111	50	6	6	37	1.54
911479--911516	20	2.0	19	90	10	60	47	10	23	18	1.79
917195--917237	14	2.9	15	79	6	52	53	2	9	34	1.46
917189--917254	29	2.3	29	78	5	71	56	4	10	28	1.53
921741--921795	3	18.7	3	92	3	94	63	0	0	36	0.95
921931--922263	111	3.0	111	92	0	540	29	17	24	29	1.97
925618--925655	20	1.9	20	88	0	58	7	26	39	26	1.83
931796--932321	111	4.7	111	93	0	845	29	15	24	30	1.96
932322--932477	79	2.0	78	84	1	204	27	19	22	30	1.98
932448--932550	34	3.0	34	81	0	125	33	16	20	30	1.95
933945--933969	5	5.0	5	100	0	50	60	20	0	20	1.37
939543--939572	2	15.0	2	92	0	51	50	3	0	46	1.18
941113--941155	21	2.0	21	95	0	77	11	27	23	37	1.89
941173--941212	3	13.7	3	84	5	55	60	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
941165--941209	23	2.0	23	90	0	72	57	0	0	42	0.98
941795--941830	17	2.1	17	100	0	72	27	11	19	41	1.85
943991--944049	12	4.9	12	95	0	109	16	15	23	44	1.86
944192--944263	30	2.6	27	77	18	76	36	4	2	56	1.33
945793--945828	2	18.0	2	100	0	72	50	0	0	50	1.00
953014--953061	11	4.4	11	89	0	78	87	8	4	0	0.66
962980--963150	88	1.9	90	89	5	267	39	15	19	25	1.91
962892--964051	328	3.5	329	93	2	1893	37	16	20	25	1.93
964177--964251	30	2.5	30	76	19	77	37	4	2	56	1.32
964754--964787	2	17.0	2	100	0	68	50	0	0	50	1.00
966298--966324	2	13.5	2	100	0	54	48	0	0	51	1.00
967926--968005	35	2.3	35	95	0	142	41	32	7	18	1.79
968036--968086	20	2.5	20	100	0	102	19	23	11	45	1.83
970866--971030	82	2.0	82	100	0	330	24	14	18	42	1.88
978782--978852	20	3.5	20	94	0	106	28	21	16	33	1.95
978902--978979	22	3.5	22	98	0	147	17	17	29	34	1.94
980091--980137	23	2.0	23	95	0	85	31	27	21	19	1.97
986151--986189	5	7.4	5	88	11	60	58	0	0	41	0.98
986539--986945	200	2.0	200	98	0	780	26	21	17	34	1.95
986996--987078	32	2.8	30	80	10	89	8	19	0	72	1.10
987016--987049	12	2.8	13	91	8	54	11	14	0	73	1.10
987149--988107	259	3.7	258	86	2	1278	34	16	15	33	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
988030--988144	42	2.7	42	93	0	185	35	20	20	24	1.96
990394--990435	6	7.7	6	84	15	56	0	28	0	71	0.86
990355--990435	26	3.1	26	81	15	71	0	28	0	71	0.86
990359--990436	21	3.5	21	72	24	63	0	28	0	71	0.86
990355--990450	20	4.7	20	81	14	83	0	26	2	71	0.96
996030--996067	8	5.3	7	82	17	51	55	42	0	2	1.14
1003709--1003759	20	2.5	20	87	6	77	33	31	11	23	1.91
1011804--1011848	6	7.5	6	100	0	90	68	0	31	0	0.89
1012580--1012640	23	2.6	24	82	10	72	55	0	1	42	1.09
1012883--1012936	24	2.2	24	96	0	99	24	31	1	42	1.65
1014104--1014156	26	2.2	24	86	10	72	41	1	11	45	1.51
1014041--1014136	37	2.6	37	86	6	133	43	2	10	43	1.50
1022008--1022064	22	2.6	22	78	8	62	17	10	5	66	1.40
1027146--1027477	91	3.8	91	82	9	319	25	23	13	37	1.91
1027288--1027448	80	2.0	80	100	0	322	24	27	9	37	1.87
1027438--1027506	22	3.4	22	66	25	69	14	28	13	43	1.83
1027419--1027516	39	2.5	39	96	0	178	20	26	11	41	1.86
1027369--1027607	130	1.8	130	89	0	379	23	24	13	38	1.91
1027247--1027691	210	2.1	213	85	5	592	24	23	13	39	1.90
1027458--1028254	91	8.8	90	87	2	1044	25	22	14	37	1.92
1027458--1028254	90	8.8	90	87	2	1037	25	22	14	37	1.92
1027458--1028241	271	2.9	270	89	2	1187	25	22	14	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1028661--1028914	66	3.9	66	76	8	205	38	13	18	28	1.89
1028780--1028905	65	1.9	66	82	4	157	39	12	16	30	1.86
1028866--1028948	34	2.4	34	83	4	94	39	18	18	24	1.92
1029105--1029681	90	6.4	90	90	1	845	36	20	16	26	1.94
1031521--1031591	33	2.2	32	82	12	83	8	16	1	73	1.15
1037872--1037918	18	2.6	18	86	0	58	31	40	14	12	1.84
1038194--1038242	22	2.2	22	92	0	80	20	32	22	24	1.98
1038307--1038369	13	4.7	13	86	4	81	53	33	9	3	1.49
1042678--1042713	13	2.8	13	100	0	72	72	5	13	8	1.27
1046531--1046600	20	3.5	20	82	0	77	28	18	17	35	1.93
1046676--1046721	20	2.3	20	92	0	74	26	21	21	30	1.99
1047437--1047472	18	2.0	18	88	0	54	36	36	16	11	1.84
1052661--1052760	49	2.0	50	98	1	193	26	27	24	23	2.00
1064373--1064399	2	13.5	2	100	0	54	51	0	0	48	1.00
1070198--1070248	15	3.4	15	76	10	50	72	3	3	19	1.16
1071033--1071061	15	2.0	15	93	6	51	75	0	0	24	0.80
1071122--1071169	21	2.3	21	100	0	96	27	14	4	54	1.59
1075841--1075922	35	2.2	37	89	8	123	23	9	20	46	1.80
1086123--1086225	43	2.4	44	90	4	156	31	26	7	34	1.85
1090467--1090508	16	2.6	16	92	0	66	21	9	28	40	1.84
1105466--1105644	85	2.1	86	80	13	201	31	18	19	30	1.96
1116213--1116252	15	2.7	14	88	7	53	7	25	0	67	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1119242--1119276	15	2.4	15	95	4	63	31	2	5	60	1.35
1138746--1138787	21	2.0	20	86	13	59	23	16	9	50	1.75
1140187--1140754	81	7.1	80	83	5	635	31	21	10	36	1.88
1140187--1140754	161	3.5	159	84	4	624	31	21	10	36	1.88
1140251--1140754	161	3.1	160	86	3	656	31	21	11	35	1.88
1150651--1150703	15	3.5	15	89	2	70	58	11	20	9	1.60
1156649--1156709	8	8.1	8	84	14	76	59	0	0	40	0.98
1156650--1156708	6	9.8	6	88	0	82	57	0	0	42	0.98
1156652--1156709	14	4.0	14	82	8	80	58	0	0	41	0.98
1156764--1156952	85	2.2	85	84	3	247	33	16	17	31	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21