genome.fa.s8756.2.7.7.80.10.50.1000.13.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008756.1 Hibiscus syriacus cultivar Beakdansim tig00111848_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4584045

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   

This is table  13  of  21  ( 2443 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2754818--2754862	2	22.5	2	95	0	72	53	0	0	46	1.00
2756943--2757741	105	7.6	105	93	1	1327	23	18	25	32	1.97
2756767--2757741	315	3.1	315	91	3	1548	23	18	25	32	1.97
2758494--2758537	8	5.5	8	81	8	54	2	15	0	81	0.78
2758491--2758537	16	3.1	15	85	8	60	4	14	0	80	0.85
2758495--2758537	7	5.6	7	84	13	50	2	16	0	81	0.79
2769273--2769304	2	16.0	2	100	0	64	50	0	0	50	1.00
2769489--2769521	2	16.5	2	93	0	57	51	3	0	45	1.16
2772152--2772195	24	1.9	24	90	9	74	9	15	31	43	1.79
2772216--2772251	3	12.0	3	100	0	72	66	0	0	33	0.92
2775139--2775165	13	2.1	13	100	0	54	66	0	7	25	1.17
2775371--2775463	2	46.5	2	89	0	141	49	5	0	45	1.25
2781775--2782020	29	7.8	29	67	25	126	40	14	20	25	1.90
2781738--2782144	65	6.2	65	88	3	550	41	13	18	26	1.87
2782098--2782238	30	4.5	30	70	20	110	43	13	12	30	1.81
2782034--2782295	95	2.7	95	85	5	323	42	13	14	30	1.83
2782254--2782354	36	2.8	36	78	11	109	34	12	20	31	1.91
2783572--2783627	11	5.0	11	82	2	67	0	14	3	82	0.81
2783574--2783627	16	3.2	18	84	12	78	0	14	3	81	0.82
2783572--2783615	10	4.1	11	83	13	56	0	13	2	84	0.73
2785764--2785834	18	3.9	18	96	0	124	19	22	32	25	1.98
2789355--2789391	19	1.9	19	88	0	56	2	21	18	56	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2790879--2790905	13	2.1	13	100	0	54	66	0	7	25	1.17
2791111--2791250	2	70.0	2	94	0	244	50	2	0	47	1.16
2799485--2799530	17	2.7	17	96	0	83	23	13	15	47	1.80
2802050--2802384	135	2.5	129	88	5	476	46	11	12	29	1.77
2802050--2802384	68	5.0	68	85	6	481	46	11	12	29	1.77
2810435--2810510	13	5.3	13	72	17	53	18	44	19	17	1.87
2810413--2810489	18	4.6	18	78	15	101	19	50	18	11	1.77
2810417--2810495	31	2.5	31	87	0	131	18	48	18	13	1.81
2810471--2810517	8	6.5	8	77	22	59	14	38	25	21	1.92
2810487--2810518	7	4.4	7	92	7	55	12	34	28	25	1.92
2810471--2810517	15	3.3	15	91	5	71	14	38	25	21	1.92
2813193--2813293	51	2.0	51	90	7	161	22	18	17	40	1.91
2815024--2815084	13	4.3	13	73	18	59	18	47	19	14	1.82
2815002--2815078	18	4.6	18	81	15	110	18	50	19	11	1.77
2815006--2815084	31	2.5	31	91	0	140	17	48	20	13	1.81
2815060--2815106	8	6.5	8	72	22	50	17	36	25	21	1.94
2815076--2815107	7	4.4	7	92	7	55	15	31	28	25	1.96
2815077--2815105	15	1.9	15	100	0	58	17	27	27	27	1.97
2817560--2817668	24	4.5	24	74	8	96	20	15	17	46	1.84
2818977--2819016	2	20.0	2	100	0	80	50	0	0	50	1.00
2830505--2830569	22	2.9	22	75	11	60	81	1	13	3	0.88
2830525--2830561	13	2.7	14	91	4	58	83	0	16	0	0.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2830503--2830575	20	3.7	19	74	15	58	79	1	15	4	0.95
2830525--2830561	7	5.4	7	87	6	58	83	0	16	0	0.64
2830536--2830583	21	2.2	21	88	7	69	79	0	16	4	0.89
2831444--2832002	240	2.3	240	91	1	897	37	16	20	25	1.93
2831920--2832094	91	1.9	92	85	3	246	41	15	18	24	1.89
2832460--2832509	3	16.7	3	100	0	100	34	0	0	66	0.92
2844821--2844864	22	2.0	22	90	0	70	36	27	9	27	1.87
2848088--2848119	8	3.8	9	88	12	50	40	0	0	59	0.97
2849380--2849441	26	2.5	23	84	12	70	56	0	6	37	1.25
2849740--2849790	23	2.2	23	89	6	77	47	1	3	47	1.32
2849776--2849819	20	2.2	20	92	8	72	54	0	0	45	0.99
2849783--2849821	19	2.1	19	90	9	62	56	0	0	43	0.99
2849753--2849846	23	4.4	21	80	16	79	50	0	2	47	1.13
2849753--2849831	42	1.9	43	82	12	103	49	0	2	48	1.14
2858237--2858351	29	4.0	28	80	6	124	40	15	21	21	1.90
2867241--2867267	2	13.5	2	100	0	54	48	0	0	51	1.00
2895864--2895939	18	4.4	17	77	12	75	75	0	21	3	0.97
2895864--2895939	23	3.3	23	94	0	134	75	0	21	3	0.97
2895880--2895939	5	12.8	5	79	13	65	76	0	20	3	0.92
2903697--2903742	18	2.7	18	90	6	69	28	30	6	34	1.82
2906489--2906822	66	5.1	66	84	1	418	26	12	26	33	1.93
2907071--2907108	20	2.1	19	85	14	53	65	7	15	10	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2909917--2909976	31	1.9	31	100	0	120	30	6	20	43	1.77
2913672--2913753	20	4.1	20	77	0	83	19	28	41	10	1.85
2914256--2914336	25	3.3	23	77	14	74	19	1	3	75	1.02
2914256--2914336	7	10.1	7	78	19	63	19	1	3	75	1.02
2914248--2914336	24	3.7	24	78	11	76	20	1	3	75	1.01
2914270--2914342	15	4.6	16	72	17	55	21	1	2	73	1.03
2914280--2914352	17	4.5	16	77	14	62	20	2	2	73	1.08
2914256--2914352	32	3.0	30	80	17	90	20	2	4	73	1.10
2914303--2914352	15	3.1	17	80	16	61	22	4	4	70	1.21
2920601--2920757	81	1.9	81	89	0	242	26	22	14	36	1.93
2920745--2920895	68	2.2	68	90	2	241	28	24	16	30	1.97
2921103--2921252	59	2.7	54	76	11	149	34	20	10	34	1.86
2921140--2921274	58	2.3	58	83	3	173	31	21	12	34	1.91
2921588--2921624	19	1.9	19	88	0	56	27	32	10	29	1.90
2921689--2921733	22	2.1	21	88	8	65	26	24	15	33	1.95
2925534--2925578	2	22.5	2	95	0	81	51	0	0	48	1.00
2925882--2926111	81	2.8	81	91	0	379	26	23	11	37	1.90
2926048--2926254	68	3.0	68	85	4	222	26	25	15	32	1.95
2926462--2926611	54	2.7	54	77	11	158	34	20	10	34	1.87
2926462--2926613	59	2.7	55	79	7	171	34	20	10	34	1.87
2926462--2926632	58	3.0	56	78	6	184	33	20	11	35	1.88
2926990--2927180	95	2.0	96	82	6	237	29	23	16	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2933165--2933224	23	2.7	23	84	7	70	76	0	16	6	0.99
2933204--2933228	13	1.9	13	100	0	50	80	0	12	8	0.92
2933823--2933863	21	1.9	22	90	5	66	48	14	14	21	1.80
2935170--2935194	13	1.9	13	100	0	50	56	4	16	24	1.57
2935850--2935920	8	8.8	8	72	20	58	15	1	2	80	0.90
2936019--2936073	20	2.7	19	86	13	67	20	0	3	76	0.94
2936019--2936074	16	4.1	15	78	19	52	19	0	3	76	0.93
2936749--2936775	13	2.1	13	100	0	54	55	7	14	22	1.64
2937430--2937480	17	2.9	18	80	11	61	19	1	0	78	0.85
2937581--2937639	17	3.5	17	78	19	52	22	0	3	74	0.96
2937581--2937630	20	2.4	20	87	12	66	20	0	4	76	0.95
2937598--2937631	16	2.2	15	89	5	50	17	0	5	76	0.98
2939293--2939329	19	1.9	19	88	0	56	32	27	16	24	1.96
2939397--2939437	21	2.0	21	85	0	55	24	17	19	39	1.92
2939707--2939747	19	2.0	20	86	9	57	24	21	21	31	1.98
2939807--2939831	6	4.2	6	100	0	50	36	48	16	0	1.46
2940158--2940214	19	2.7	21	73	15	55	35	26	5	33	1.79
2940172--2940209	19	2.0	19	89	0	58	34	26	5	34	1.79
2941026--2941065	3	13.0	3	89	5	62	70	0	30	0	0.88
2945214--2945313	3	32.7	3	80	7	112	60	0	0	40	0.97
2945447--2945731	124	2.4	121	84	7	348	23	18	15	42	1.88
2945697--2945752	16	3.4	16	72	13	51	17	21	10	50	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2945678--2945765	33	2.5	35	85	9	126	20	19	10	50	1.76
2945713--2945764	17	3.1	17	73	15	63	21	21	9	48	1.78
2945697--2945764	33	2.1	33	97	0	127	20	20	10	48	1.78
2945732--2946633	113	8.0	113	83	5	1142	29	18	14	37	1.91
2945732--2946633	229	4.0	226	90	2	1307	29	18	14	37	1.91
2947045--2947121	22	3.5	22	85	0	109	40	10	12	36	1.78
2947469--2947677	54	4.0	53	81	9	225	25	21	15	38	1.92
2947473--2947677	104	1.9	107	83	7	267	24	20	15	39	1.91
2949653--2949872	114	1.9	114	90	3	354	31	20	15	33	1.93
2952115--2952144	11	2.7	11	94	0	51	0	13	0	86	0.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21