genome.fa.s8756.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008756.1 Hibiscus syriacus cultivar Beakdansim tig00111848_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4584045

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   

This is table  7  of  21  ( 2443 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1376754--1376939	75	2.5	74	78	10	173	32	14	25	27	1.94
1376903--1376955	22	2.5	20	80	16	63	30	15	30	24	1.95
1377298--1377668	57	6.5	57	87	2	548	37	11	18	33	1.86
1377298--1377668	115	3.3	114	88	2	550	37	11	18	33	1.86
1377298--1377668	172	2.2	170	90	0	580	37	11	18	33	1.86
1378023--1378173	81	1.9	81	84	0	203	39	9	20	29	1.85
1380157--1380201	15	2.9	15	86	3	54	51	4	4	40	1.42
1380966--1381011	24	1.9	24	100	0	92	34	21	10	32	1.88
1388454--1388478	2	12.5	2	100	0	50	52	0	0	48	1.00
1390660--1390715	22	2.7	20	82	15	69	30	17	28	23	1.97
1391056--1391547	57	8.6	57	88	0	743	36	11	19	31	1.87
1391056--1391547	227	2.2	228	90	1	772	36	11	19	31	1.87
1394777--1394831	20	2.5	23	82	11	62	61	1	9	27	1.36
1396429--1396560	47	2.8	47	86	5	162	30	22	15	31	1.95
1396578--1396602	8	3.1	8	100	0	50	12	36	12	40	1.79
1396702--1396810	46	2.3	46	76	1	110	28	21	17	33	1.96
1402169--1402219	11	4.9	10	79	13	50	1	17	3	76	1.03
1404891--1404930	21	1.9	22	90	10	66	55	2	2	40	1.27
1409128--1409175	18	2.7	18	93	0	87	27	12	22	37	1.90
1409164--1409223	22	2.9	21	85	5	77	40	13	20	26	1.89
1414209--1414244	5	7.6	5	93	6	58	33	0	0	66	0.92
1414201--1414244	23	1.9	23	90	0	70	29	2	2	65	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1414209--1414244	13	2.6	14	86	13	56	33	0	0	66	0.92
1415624--1415693	34	2.1	33	84	10	90	24	28	15	31	1.96
1416042--1416106	20	3.3	19	82	8	85	13	24	43	18	1.87
1417852--1417899	19	2.5	20	82	3	62	29	14	4	52	1.60
1418759--1418828	34	2.1	33	84	5	88	24	28	14	32	1.94
1419179--1419239	20	3.0	20	92	0	104	13	29	37	19	1.90
1427287--1427327	20	2.0	21	85	4	57	31	0	24	43	1.54
1434393--1434436	22	2.1	21	84	12	56	38	15	20	25	1.92
1444983--1445073	25	3.6	25	89	1	137	17	41	15	25	1.88
1447365--1447417	27	2.0	27	85	7	74	58	1	0	39	1.09
1449444--1449495	21	2.5	21	81	3	61	38	19	25	17	1.93
1450111--1450155	19	2.4	19	92	0	72	48	26	15	8	1.74
1450151--1450296	19	8.1	19	73	18	100	13	24	20	41	1.88
1450184--1450271	33	2.6	33	96	1	158	11	27	22	38	1.88
1452430--1452496	21	3.2	21	66	6	55	23	35	20	19	1.95
1452378--1452496	42	2.8	42	81	5	107	22	36	18	22	1.95
1453846--1453881	14	2.6	14	95	0	63	30	0	25	44	1.54
1454006--1454062	14	3.7	14	72	20	51	45	21	22	10	1.82
1453988--1454077	33	2.7	33	89	0	135	44	20	21	14	1.86
1453988--1454048	19	3.5	18	72	21	58	45	21	21	11	1.82
1454073--1454203	19	7.7	19	66	23	94	13	22	19	43	1.87
1454077--1454203	33	3.9	32	87	8	193	14	22	19	43	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1454070--1454199	66	2.0	66	98	0	251	15	22	19	43	1.88
1456489--1456513	12	2.1	12	100	0	50	0	28	0	72	0.86
1456688--1456741	24	2.2	24	90	0	81	40	20	16	22	1.91
1457488--1457535	20	2.4	20	96	0	87	25	20	31	22	1.98
1457504--1457598	41	2.3	41	87	3	129	21	18	24	35	1.95
1457648--1457688	21	2.0	21	90	0	64	39	31	14	14	1.87
1461069--1461109	18	2.3	18	87	4	57	29	7	2	60	1.36
1463427--1463511	35	2.5	33	78	14	91	25	8	10	55	1.62
1466818--1466850	12	2.8	12	86	4	50	69	6	0	24	1.10
1468310--1468365	21	2.7	21	94	0	94	19	28	26	25	1.99
1468427--1468582	65	2.4	64	84	5	181	28	18	22	30	1.97
1468467--1468632	65	2.6	63	78	11	176	25	18	24	31	1.98
1477026--1477052	8	3.4	8	100	0	54	22	22	29	25	1.99
1477570--1477669	42	2.4	42	89	3	148	37	37	7	19	1.79
1478746--1478788	17	2.5	17	81	7	52	55	4	0	39	1.20
1478936--1479266	135	2.5	135	87	3	461	24	21	17	36	1.95
1480293--1480340	17	3.0	15	77	14	51	56	27	2	14	1.50
1482115--1482195	21	3.8	22	79	9	78	16	24	34	24	1.95
1482116--1482197	20	3.9	21	78	10	69	15	25	32	25	1.96
1486142--1486444	153	2.0	152	97	1	572	31	12	10	46	1.74
1491525--1491577	28	2.0	26	85	7	70	58	7	15	18	1.60
1493821--1493975	78	2.0	80	94	5	280	54	14	10	20	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1504887--1504932	24	1.9	24	90	0	74	23	10	0	65	1.24
1512388--1512416	13	2.2	13	100	0	58	48	27	6	17	1.72
1521352--1521441	30	3.0	30	75	6	101	17	12	13	56	1.67
1521533--1521573	22	1.9	21	90	5	64	29	0	9	60	1.28
1525335--1525427	15	6.5	14	75	12	91	72	9	15	3	1.24
1525325--1525427	28	3.7	27	81	12	111	72	8	15	2	1.21
1525333--1525427	43	2.2	40	79	16	111	72	9	14	3	1.22
1525384--1525446	29	2.1	30	82	5	74	71	7	15	4	1.27
1526455--1526524	32	2.2	32	86	0	95	32	15	22	28	1.95
1526668--1526752	37	2.3	38	79	8	102	27	18	9	44	1.80
1527116--1527180	33	2.0	33	93	3	114	38	10	12	38	1.78
1527068--1527243	98	1.8	92	85	7	244	31	11	13	43	1.80
1527212--1527263	26	2.0	26	96	3	95	36	9	11	42	1.74
1527395--1527775	130	2.9	130	80	7	394	25	31	17	25	1.97
1529453--1529705	30	8.5	30	67	9	142	17	13	13	55	1.69
1531491--1531545	23	2.4	22	81	6	65	27	1	3	67	1.17
1531702--1531759	21	2.8	20	82	15	64	36	0	0	63	0.94
1536608--1537320	357	2.0	357	95	0	1273	32	15	21	30	1.95
1539265--1539294	12	2.4	13	88	11	53	6	36	0	56	1.26
1540260--1540300	21	2.0	21	90	0	64	26	29	21	21	1.99
1540744--1540792	25	2.0	25	87	0	71	22	18	26	32	1.97
1542660--1542719	20	3.0	21	85	4	79	31	25	20	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1543205--1543307	19	5.4	19	75	11	68	35	19	21	23	1.96
1543210--1543277	35	1.9	35	84	0	91	36	14	22	26	1.93
1545316--1545352	20	1.9	19	89	10	58	45	10	24	18	1.81
1552120--1552228	24	4.5	24	85	0	119	17	12	14	55	1.70
1556773--1556881	24	4.6	25	82	4	120	18	11	17	52	1.74
1556773--1556881	48	2.3	49	82	6	134	18	11	17	52	1.74
1559438--1559495	16	3.6	16	90	0	89	56	22	12	8	1.62
1560406--1560474	24	2.9	24	88	0	93	56	15	11	15	1.67
1560429--1560481	14	4.1	14	76	18	60	52	24	13	9	1.69
1562879--1562926	23	2.1	22	81	11	53	4	14	6	75	1.16
1566330--1566362	15	2.2	15	100	0	66	36	6	0	57	1.23
1569739--1569821	29	2.9	29	94	0	139	43	24	10	21	1.84
1569828--1569870	18	2.5	17	85	7	59	16	23	41	18	1.89
1569840--1569879	18	2.2	18	95	0	71	10	20	50	20	1.76
1577149--1577230	28	2.9	29	92	3	139	46	20	9	23	1.80
1579131--1579273	72	2.0	72	94	0	250	38	11	9	40	1.74
1581044--1581097	22	2.5	22	87	0	72	46	22	1	29	1.62
1581679--1581965	42	6.8	42	79	2	313	34	19	20	25	1.96
1581677--1581960	85	3.3	85	87	1	392	35	18	21	25	1.95
1586787--1587000	79	2.7	81	81	7	240	33	18	17	30	1.94
1602321--1602360	21	1.9	21	89	0	62	25	40	25	10	1.86
1606086--1606144	24	2.5	24	82	0	73	32	13	18	35	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1606208--1606303	21	4.7	21	66	19	60	28	18	18	34	1.95
1606209--1606281	37	2.0	37	97	0	137	27	21	16	34	1.95
1606529--1606564	18	2.0	18	100	0	72	50	5	11	33	1.61
1609122--1609192	5	14.8	5	78	19	80	64	0	0	35	0.94
1609117--1609192	29	2.6	29	82	15	95	64	1	0	34	1.02
1609122--1609189	7	9.9	7	79	19	63	64	0	0	35	0.94
1609130--1609213	7	12.6	7	78	16	72	60	2	0	36	1.10
1609204--1609243	22	1.9	21	85	10	55	45	5	2	47	1.38
1609229--1609256	13	2.2	13	100	0	56	42	7	7	42	1.59
1609266--1609300	16	2.2	16	94	0	61	37	17	8	37	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21