genome.fa.s8756.2.7.7.80.10.50.1000.15.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008756.1 Hibiscus syriacus cultivar Beakdansim tig00111848_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4584045

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   

This is table  15  of  21  ( 2443 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3252006--3252045	10	3.8	10	87	12	62	87	0	12	0	0.54
3252002--3252063	17	3.4	18	86	10	83	82	0	17	0	0.67
3252013--3252063	12	4.2	12	80	5	57	82	0	17	0	0.67
3252008--3252056	22	2.2	23	92	3	82	83	0	16	0	0.64
3252002--3252063	22	2.7	23	82	10	81	82	0	17	0	0.67
3254344--3254722	93	4.1	93	92	2	575	28	14	21	35	1.93
3257205--3257259	22	2.5	22	84	0	83	32	14	14	38	1.87
3257940--3258193	76	3.3	76	97	0	481	21	21	22	35	1.96
3258140--3258252	59	1.9	59	98	0	217	18	23	20	38	1.94
3258199--3258783	76	7.8	76	95	1	1072	21	21	21	35	1.96
3258926--3258964	9	4.3	9	93	0	51	25	0	0	74	0.82
3258933--3258985	3	17.7	3	84	7	72	33	0	0	66	0.92
3258992--3259046	26	2.1	26	89	0	83	40	32	18	9	1.82
3260357--3260396	12	3.1	13	82	10	55	40	0	0	60	0.97
3268425--3268460	18	1.9	19	94	5	65	22	30	8	38	1.83
3269956--3270137	91	2.0	91	100	0	364	40	17	20	20	1.91
3272861--3273273	204	2.0	208	98	1	798	30	18	16	33	1.93
3273884--3273981	31	3.2	31	60	11	74	24	26	5	43	1.75
3273894--3273998	33	3.3	33	61	10	83	22	24	6	45	1.76
3273879--3274002	62	2.0	62	100	0	248	24	24	6	45	1.76
3284521--3284555	9	4.0	9	85	7	54	31	11	22	34	1.90
3284521--3284555	17	2.1	17	94	0	61	31	11	22	34	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3294246--3294312	31	2.2	30	86	5	91	35	7	22	34	1.82
3299985--3300072	31	2.9	30	76	14	92	38	7	20	32	1.82
3300550--3300577	11	2.5	11	100	0	56	46	0	14	39	1.44
3306687--3306739	21	2.5	21	93	0	88	28	30	16	24	1.97
3308160--3308187	3	9.3	3	100	0	56	0	0	32	67	0.91
3310121--3310316	46	4.3	46	80	3	216	41	11	20	26	1.86
3310121--3310316	92	2.1	92	81	1	241	41	11	20	26	1.86
3313011--3314863	57	32.6	57	89	0	2714	34	18	10	36	1.86
3315290--3315347	24	2.7	20	73	19	62	27	18	12	41	1.86
3315193--3315418	96	2.4	95	81	3	249	26	21	13	38	1.90
3319240--3319480	46	5.3	46	81	6	292	43	12	19	24	1.85
3332151--3332198	24	2.0	24	100	0	96	41	12	12	33	1.80
3338370--3338438	24	2.9	24	93	0	111	47	13	10	28	1.74
3338976--3339034	31	1.9	31	86	3	84	35	18	10	35	1.85
3342230--3342258	2	14.5	2	100	0	58	48	0	0	51	1.00
3345076--3345360	49	5.8	49	84	0	354	39	14	19	26	1.90
3352129--3352463	49	6.8	49	87	2	456	39	14	18	27	1.89
3352129--3352463	148	2.3	146	88	2	413	39	14	18	27	1.89
3355775--3355831	3	19.0	3	100	0	114	33	0	0	66	0.92
3357442--3357486	23	2.0	23	86	0	63	62	2	4	31	1.27
3357662--3357752	45	2.0	45	85	4	121	42	8	5	42	1.59
3357709--3357841	33	4.1	31	68	11	79	48	11	4	36	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3357437--3358233	197	4.1	196	83	6	924	47	9	6	36	1.60
3357520--3358251	98	7.6	97	67	13	317	47	9	6	36	1.61
3357860--3357984	32	3.9	32	77	7	110	47	8	6	37	1.60
3357516--3358233	382	1.9	382	85	2	987	47	9	6	36	1.62
3358091--3358251	32	5.0	32	75	10	121	49	8	6	35	1.61
3359156--3359732	42	13.7	42	80	3	586	35	17	20	27	1.95
3359175--3359730	167	3.3	167	87	3	706	34	17	20	27	1.95
3359162--3359749	125	4.6	126	80	4	567	34	17	20	27	1.95
3361253--3361554	40	7.6	41	73	9	187	37	16	16	29	1.91
3361313--3361451	74	1.9	73	80	4	163	38	17	15	28	1.90
3361423--3361536	42	2.8	41	84	4	140	35	15	18	29	1.92
3361395--3361552	82	1.9	82	83	2	201	35	17	17	29	1.93
3361806--3361837	16	2.0	16	100	0	64	62	12	6	18	1.50
3363148--3363187	20	2.0	20	95	0	71	25	17	15	42	1.88
3365308--3365339	15	2.1	15	100	0	64	18	31	6	43	1.75
3365414--3365442	2	14.5	2	100	0	58	48	0	0	51	1.00
3366144--3366282	56	2.5	56	97	0	260	33	8	15	41	1.78
3366528--3366778	56	4.5	56	81	3	184	36	17	11	34	1.86
3366558--3366781	56	4.0	56	84	1	270	35	18	11	34	1.87
3367002--3367246	56	4.4	56	80	2	260	30	7	19	42	1.79
3367002--3367285	112	2.5	112	80	3	286	31	7	19	42	1.77
3367821--3367941	57	2.1	57	87	0	170	39	19	11	29	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3369580--3369753	93	1.9	93	86	2	251	40	13	10	35	1.79
3369768--3369923	56	2.8	55	73	11	145	42	8	10	37	1.72
3370054--3370169	56	2.1	57	83	4	146	37	17	11	34	1.85
3370111--3370356	92	2.7	91	79	6	282	37	16	8	36	1.80
3370317--3370475	56	2.8	56	80	1	194	40	16	10	31	1.83
3375537--3375582	2	23.0	2	81	0	56	41	0	8	50	1.33
3375537--3375582	14	3.3	14	87	0	65	41	0	8	50	1.33
3375537--3375579	18	2.4	18	100	0	86	39	0	9	51	1.34
3375541--3375582	22	1.9	22	95	0	75	40	0	9	50	1.35
3376245--3376772	263	2.0	263	100	0	1056	29	9	26	33	1.89
3407610--3407645	15	2.5	14	86	8	54	16	2	5	75	1.12
3427201--3427500	141	2.2	137	84	7	369	25	18	29	27	1.98
3428443--3428492	23	2.2	23	89	7	75	8	14	0	78	0.97
3428449--3428495	23	2.0	24	95	4	87	4	17	0	78	0.90
3428464--3428530	36	1.9	34	82	11	82	10	17	0	71	1.13
3435639--3435701	30	2.1	30	84	0	81	31	6	20	41	1.77
3442039--3442075	3	12.3	3	100	0	74	64	0	0	35	0.94
3447528--3447582	21	2.6	21	100	0	110	25	18	27	29	1.98
3447746--3447784	20	2.0	20	90	9	64	41	17	5	35	1.72
3447979--3448042	21	3.1	21	80	10	80	48	7	12	31	1.69
3447985--3448042	18	3.1	18	83	11	80	50	8	12	29	1.69
3452767--3452807	20	2.0	20	90	0	64	31	19	14	34	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3452965--3453008	21	2.1	21	83	8	54	54	15	9	20	1.68
3452976--3453022	21	2.2	22	77	11	53	51	17	10	21	1.75
3453449--3453500	20	2.6	20	84	6	70	30	19	17	32	1.95
3461616--3461725	40	2.8	40	84	0	139	28	23	22	25	2.00
3469196--3469229	17	1.9	18	94	5	61	76	5	11	5	1.14
3475925--3475968	20	2.2	20	88	11	65	43	0	0	56	0.99
3489780--3490872	81	13.5	81	85	3	1364	38	21	16	23	1.92
3489780--3490872	244	4.5	245	85	2	1452	38	21	16	23	1.92
3491002--3491043	19	2.3	19	87	4	59	26	2	0	71	0.98
3491099--3491154	24	2.3	25	84	9	80	50	32	8	8	1.65
3493504--3493852	100	3.5	98	71	10	314	39	4	10	45	1.58
3493617--3493751	33	4.2	32	73	7	103	40	2	11	45	1.55
3493492--3494014	198	2.7	188	85	4	643	38	4	9	47	1.55
3501218--3501493	38	7.4	37	76	14	248	46	3	7	42	1.48
3501227--3501427	36	5.6	35	75	12	119	46	2	7	43	1.47
3501218--3501466	72	3.3	73	81	8	265	46	3	7	42	1.48
3501509--3501548	17	2.4	16	84	12	53	30	0	0	70	0.88
3502799--3502900	41	2.6	38	80	14	100	17	8	1	71	1.21
3502846--3502900	24	2.3	24	74	0	56	14	7	1	76	1.08
3502817--3502930	36	3.2	36	73	11	103	18	7	2	71	1.23
3506701--3506889	100	1.9	100	92	1	317	34	17	19	28	1.94
3508146--3508190	21	2.1	21	83	4	54	28	33	2	35	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3511963--3512387	85	5.0	85	87	1	541	35	19	18	27	1.95
3513246--3513394	38	4.0	38	85	3	187	41	2	8	47	1.46
3513376--3513403	2	14.0	2	100	0	56	50	0	0	50	1.00
3513340--3513443	50	2.1	49	89	5	156	41	0	6	50	1.35
3513390--3513595	41	5.5	36	81	16	201	43	1	7	47	1.41
3513388--3513631	39	6.4	39	81	16	246	45	1	7	45	1.41
3513420--3513469	26	2.0	25	84	4	64	42	0	8	50	1.32
3513531--3513584	28	1.9	28	85	7	74	46	3	7	42	1.49
3513469--3513629	35	4.4	34	80	16	155	47	2	7	42	1.45
3514878--3514922	17	2.6	17	82	3	54	15	4	2	77	1.02

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21