genome.fa.s8756.2.7.7.80.10.50.1000.21.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008756.1 Hibiscus syriacus cultivar Beakdansim tig00111848_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4584045

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   

This is table  21  of  21  ( 2443 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4457156--4457209	20	2.7	20	100	0	108	27	16	24	31	1.96
4457096--4457212	61	1.9	61	83	0	153	24	17	24	33	1.96
4457096--4457230	61	2.2	61	80	2	146	23	19	24	32	1.97
4457280--4457333	21	2.6	21	100	0	108	29	33	16	20	1.95
4459050--4459079	15	2.0	15	100	0	60	53	26	20	0	1.46
4465028--4465064	19	1.9	19	100	0	74	48	0	2	48	1.15
4465135--4465189	19	2.8	19	97	2	101	61	0	0	38	0.96
4474026--4474071	22	2.1	22	87	0	65	43	13	23	19	1.86
4484946--4485069	61	2.0	62	98	1	241	29	24	28	17	1.97
4487556--4487581	11	2.4	11	100	0	52	15	15	15	53	1.73
4492669--4492713	21	2.1	21	100	0	90	53	8	8	28	1.62
4495248--4495288	21	2.0	21	95	0	73	0	19	4	75	0.98
4495756--4495871	3	39.7	3	90	5	184	62	0	1	35	1.05
4496189--4496729	113	4.8	113	91	4	783	29	19	14	36	1.91
4497492--4497804	84	3.7	84	97	0	583	37	21	13	27	1.91
4498572--4498613	19	2.2	20	91	4	68	52	11	4	30	1.59
4498957--4499010	11	5.0	10	89	10	72	0	14	0	85	0.61
4498949--4499015	29	2.3	30	85	12	95	0	17	0	82	0.68
4498949--4499003	22	2.5	22	90	3	83	0	14	0	85	0.60
4498948--4499010	22	2.9	21	83	9	81	0	15	0	84	0.63
4511275--4511313	20	2.0	20	94	0	69	0	20	5	74	1.01
4511785--4511896	3	37.7	3	89	1	172	61	0	1	36	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4514383--4514418	18	2.0	18	88	0	54	27	11	11	50	1.72
4516877--4517102	42	5.3	42	91	2	362	21	19	22	36	1.95
4516877--4517099	86	2.6	84	91	2	374	20	19	22	37	1.95
4517825--4517870	20	2.3	20	92	0	74	23	13	15	47	1.80
4517861--4517932	21	3.4	21	94	0	108	20	22	27	29	1.99
4519294--4519322	2	14.5	2	100	0	58	48	0	0	51	1.00
4520449--4520479	16	1.9	16	100	0	62	51	0	0	48	1.00
4524778--4524911	66	2.0	66	100	0	268	43	5	11	38	1.66
4528059--4528126	23	2.7	25	72	25	63	36	1	2	58	1.22
4539586--4539646	18	3.4	18	72	20	56	42	0	4	52	1.23
4539586--4539646	17	3.4	17	74	12	59	42	0	4	52	1.23
4539549--4539667	37	3.2	37	81	11	127	46	3	5	45	1.41
4553233--4553278	16	2.7	17	78	18	51	36	2	4	56	1.31
4563151--4563178	14	2.0	14	100	0	56	35	14	7	42	1.73
4565253--4565286	2	17.0	2	100	0	68	50	0	0	50	1.00
4567677--4567733	23	2.5	23	88	0	78	26	24	26	22	2.00
4567753--4568073	103	3.1	103	96	0	597	37	23	13	26	1.92
4573020--4573080	23	2.7	23	89	0	95	26	27	26	19	1.99
4577969--4578029	23	2.7	23	80	10	79	27	27	24	19	1.99
4578120--4578160	20	2.0	20	85	4	55	41	19	12	26	1.87
4578052--4578369	103	3.0	102	90	4	510	37	22	11	27	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21

The End!