genome.fa.s8756.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008756.1 Hibiscus syriacus cultivar Beakdansim tig00111848_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4584045

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   

This is table  6  of  21  ( 2443 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1156957--1156998	13	3.2	13	89	0	66	30	19	21	28	1.97
1156764--1156977	85	2.5	85	82	6	220	34	16	17	30	1.93
1156949--1156998	26	1.9	26	83	0	64	34	18	22	26	1.96
1161091--1161268	37	4.9	36	84	4	209	43	6	3	46	1.47
1167045--1167098	8	6.6	8	78	17	58	75	0	1	22	0.89
1167045--1167105	25	2.4	26	78	15	74	73	0	1	24	0.92
1167045--1167098	17	3.3	16	85	10	74	75	0	1	22	0.89
1167118--1167407	36	8.2	35	76	14	150	45	7	2	44	1.46
1167215--1167567	36	9.5	37	75	15	257	45	7	3	43	1.49
1167581--1167617	2	19.0	2	94	5	67	51	0	0	48	1.00
1168927--1169029	51	2.0	51	100	0	206	43	19	9	27	1.82
1170357--1170495	68	2.0	69	84	1	181	36	25	10	27	1.88
1172598--1172637	21	1.9	21	85	10	55	37	2	7	52	1.43
1172678--1172786	45	2.3	49	84	9	136	34	2	8	54	1.45
1177089--1177245	77	2.0	77	97	0	296	35	10	19	33	1.87
1187370--1187416	22	2.2	21	88	3	67	48	14	10	25	1.76
1188976--1189008	17	1.9	17	93	0	57	30	12	27	30	1.92
1190417--1190450	16	2.1	16	94	0	59	55	8	0	35	1.31
1208919--1208952	2	16.5	2	93	6	59	50	2	0	47	1.16
1210754--1210854	52	1.9	52	89	0	157	25	29	22	21	1.99
1217652--1217752	22	4.8	22	79	9	120	28	28	22	19	1.98
1217633--1217729	40	2.4	40	85	0	140	28	29	20	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1218287--1218449	63	2.6	63	82	2	166	26	19	22	31	1.98
1222173--1222210	14	2.7	14	100	0	76	36	0	28	34	1.58
1223240--1223403	65	2.5	64	85	1	229	27	15	26	30	1.96
1223354--1223400	19	2.5	19	83	10	62	25	17	31	25	1.97
1223244--1223450	65	3.2	62	80	12	204	27	16	24	30	1.97
1223620--1223659	20	2.0	21	85	14	57	45	7	5	42	1.54
1229847--1229886	21	1.9	21	85	10	55	35	10	2	52	1.48
1231834--1231994	65	2.5	65	83	5	193	27	15	24	32	1.95
1232211--1232250	20	2.0	21	85	14	57	45	7	5	42	1.54
1236358--1236407	21	2.3	22	83	10	59	74	6	12	8	1.22
1236778--1236825	20	2.5	20	93	3	80	41	25	14	18	1.88
1236973--1237019	22	2.1	22	88	0	67	19	40	19	21	1.92
1237369--1237407	20	2.0	20	89	0	60	51	15	12	20	1.76
1238655--1238697	16	2.7	16	85	0	59	41	30	20	6	1.79
1238938--1238987	21	2.4	21	86	0	64	24	14	30	32	1.94
1239359--1239445	21	4.1	21	90	0	111	22	35	16	25	1.94
1239369--1239460	42	2.2	42	90	0	139	22	35	18	22	1.95
1239369--1239460	21	4.4	21	87	0	121	22	35	18	22	1.95
1240897--1240957	20	3.0	20	90	0	95	16	14	24	44	1.85
1240904--1240965	20	3.1	20	86	4	90	14	19	24	41	1.88
1240952--1241023	29	2.5	29	88	0	99	29	22	15	33	1.94
1240999--1241058	20	3.0	20	78	9	68	26	20	21	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1243653--1243699	24	2.0	24	95	0	85	34	17	21	27	1.95
1243657--1243708	24	2.2	24	85	0	68	36	19	19	25	1.95
1244436--1244473	16	2.5	15	84	12	51	65	0	5	28	1.14
1244633--1244741	20	5.4	20	71	14	64	33	11	24	30	1.90
1244634--1244886	40	6.3	41	69	14	143	31	11	26	30	1.91
1244633--1244884	80	3.1	80	79	8	246	31	11	26	30	1.91
1244724--1244843	20	5.9	20	69	18	61	30	12	26	30	1.93
1244826--1244889	20	3.1	20	82	6	74	28	10	31	29	1.91
1245908--1245963	24	2.3	24	90	0	85	41	5	39	14	1.68
1248816--1248857	20	2.2	20	83	8	52	4	28	0	66	1.12
1249816--1249872	3	18.7	3	80	10	53	40	1	0	57	1.09
1250714--1250770	29	2.0	29	92	0	96	56	10	24	8	1.61
1252055--1252096	13	2.9	15	79	17	52	30	2	0	66	1.04
1252071--1252107	15	2.4	16	86	13	51	27	0	2	70	1.01
1256393--1256422	2	15.0	2	92	0	51	46	0	3	50	1.18
1256711--1256747	8	4.6	8	86	0	56	81	0	16	2	0.81
1260038--1260218	75	2.4	75	84	1	220	34	16	19	30	1.93
1260075--1260268	75	2.7	71	79	6	194	32	15	21	30	1.95
1261120--1261224	54	1.9	54	84	3	140	37	12	23	26	1.91
1262262--1262533	45	6.1	45	94	2	476	24	23	19	32	1.98
1262262--1262533	134	2.0	135	94	2	476	24	23	19	32	1.98
1262693--1262761	3	22.7	3	81	8	77	39	1	0	59	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1263810--1263955	45	3.2	45	99	0	283	41	14	6	37	1.73
1264215--1264246	16	2.0	16	93	0	55	37	0	3	59	1.13
1264458--1264491	2	17.5	2	93	6	61	50	0	0	50	1.00
1269289--1269355	31	2.2	31	97	2	127	22	11	28	37	1.90
1272883--1272924	23	1.9	21	85	9	57	9	0	28	61	1.27
1277780--1277839	24	2.5	25	78	13	72	35	1	3	60	1.23
1277770--1277877	43	2.4	47	73	18	111	35	1	2	60	1.22
1279589--1279658	20	3.5	20	74	3	79	35	14	28	21	1.92
1279697--1279778	22	3.9	22	77	7	98	37	14	20	26	1.92
1279703--1279795	20	4.4	20	76	8	78	33	16	23	26	1.95
1279703--1279795	42	2.2	42	92	0	150	33	16	23	26	1.95
1280099--1280551	56	8.1	56	90	0	703	35	12	18	33	1.88
1285454--1285504	20	2.5	20	96	0	93	25	19	29	25	1.99
1286041--1286107	22	3.0	22	82	0	89	28	22	20	28	1.99
1290273--1290336	22	2.9	22	80	2	74	26	23	18	31	1.98
1290990--1291022	16	2.0	17	88	5	50	39	9	18	33	1.82
1293681--1293762	22	3.9	21	77	7	85	37	14	18	29	1.90
1293708--1293779	20	3.5	20	74	7	72	34	16	23	25	1.95
1293693--1293772	42	1.9	42	92	0	133	36	13	22	27	1.92
1303856--1304149	56	5.2	56	86	2	419	34	10	17	38	1.84
1306336--1306371	2	18.0	2	100	0	72	50	0	0	50	1.00
1306400--1306447	25	1.9	25	95	0	87	54	10	0	35	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1306900--1306989	31	2.9	30	79	11	85	44	11	4	40	1.60
1309761--1309801	2	20.5	2	100	0	82	48	0	0	51	1.00
1325684--1325727	22	2.0	22	95	4	81	34	34	4	27	1.77
1325584--1326011	210	2.0	213	98	1	826	32	32	9	26	1.88
1325894--1325938	22	2.0	22	100	0	90	35	33	4	26	1.77
1326385--1326411	9	3.0	9	100	0	54	55	0	44	0	0.99
1327939--1328094	65	2.4	64	83	7	174	32	18	20	28	1.96
1328470--1328494	13	1.9	13	100	0	50	40	8	28	24	1.83
1328720--1329125	45	9.0	45	80	3	352	44	11	17	27	1.83
1328720--1329091	135	2.7	134	83	2	431	44	11	17	26	1.82
1330173--1330204	14	2.1	16	88	11	50	65	0	21	12	1.25
1344466--1344524	31	1.9	31	89	0	91	37	15	3	44	1.63
1344536--1344629	39	2.4	39	100	0	188	32	8	5	53	1.54
1344555--1344623	22	3.4	22	65	19	67	36	11	4	47	1.60
1346106--1346154	22	2.2	22	82	7	55	51	0	0	48	1.00
1346138--1346170	14	2.3	15	89	5	50	36	6	0	57	1.23
1347846--1348045	100	2.0	100	99	0	391	27	20	21	31	1.98
1350301--1350355	13	4.2	13	75	13	58	49	12	3	34	1.59
1350290--1350461	73	2.4	73	97	0	326	45	13	5	34	1.67
1350414--1350512	33	3.0	33	94	1	164	45	15	7	32	1.73
1350507--1350548	21	2.0	21	95	0	75	47	7	14	30	1.71
1352827--1352880	24	2.2	24	83	6	65	31	18	16	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1360710--1360798	7	12.1	7	72	20	58	77	6	15	0	0.97
1360701--1360798	14	7.2	14	75	17	66	76	7	16	0	0.99
1360701--1360781	26	3.1	26	75	13	78	76	8	14	0	1.01
1360715--1360799	31	2.8	30	80	7	91	77	7	15	0	0.97
1361662--1361728	25	2.7	23	74	17	64	34	5	2	56	1.39
1373985--1374094	55	2.0	55	81	1	130	34	18	16	30	1.93
1374008--1374328	55	5.8	55	77	2	311	33	16	17	33	1.92
1374008--1374316	110	2.8	111	83	2	372	33	16	16	33	1.91
1374363--1374402	2	20.0	2	100	0	80	50	0	0	50	1.00
1376810--1376864	22	2.6	22	83	8	71	29	18	29	23	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21