genome.fa.s8756.2.7.7.80.10.50.1000.17.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008756.1 Hibiscus syriacus cultivar Beakdansim tig00111848_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4584045

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   

This is table  17  of  21  ( 2443 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3721955--3722003	21	2.4	22	83	10	59	30	0	4	65	1.11
3722367--3722412	20	2.2	21	88	3	67	43	0	6	50	1.28
3722383--3722583	97	2.0	101	95	3	365	36	0	11	51	1.45
3724365--3725057	268	2.6	265	80	5	790	32	18	19	29	1.96
3724365--3725057	133	5.2	133	80	4	718	32	18	19	29	1.96
3725744--3725823	42	1.9	42	86	0	115	37	16	18	27	1.92
3725691--3726090	45	9.0	44	75	8	267	40	18	17	23	1.91
3726082--3726318	38	6.1	38	77	5	197	39	18	18	23	1.92
3726025--3726299	76	3.5	77	73	10	227	38	19	18	23	1.93
3731657--3731683	3	9.0	3	100	0	54	66	0	0	33	0.92
3731882--3732583	135	5.3	134	83	3	797	31	19	19	28	1.96
3733213--3733339	42	3.0	42	80	3	137	38	16	18	26	1.91
3733359--3733619	45	5.8	45	80	3	238	39	19	18	22	1.93
3733426--3733600	90	1.9	90	88	4	264	39	20	20	20	1.93
3733586--3733736	38	4.0	38	85	1	169	39	15	19	24	1.91
3733534--3733780	38	6.1	42	79	8	162	39	17	19	23	1.92
3733577--3733817	80	3.1	78	77	8	238	39	17	19	24	1.92
3733606--3733845	38	6.2	38	81	5	212	38	16	20	24	1.93
3733541--3733829	156	1.8	158	82	3	368	38	17	19	24	1.93
3735287--3735353	35	1.9	35	96	0	125	35	26	31	5	1.81
3735403--3735449	24	2.0	24	86	0	67	42	14	17	25	1.87
3739058--3739116	24	2.4	24	83	10	75	54	3	6	35	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3740046--3740092	21	2.2	22	84	3	60	4	21	0	74	0.99
3744734--3744806	29	2.5	28	78	12	69	63	8	6	21	1.46
3746898--3746976	40	2.0	40	87	0	113	39	6	21	32	1.79
3749447--3749495	20	2.4	20	75	3	62	51	6	0	42	1.27
3767957--3768039	44	1.9	42	80	4	94	39	20	13	26	1.89
3769475--3769518	23	1.9	23	82	17	56	52	0	0	47	1.00
3774359--3774435	38	2.0	39	97	2	147	33	12	11	41	1.80
3786439--3786497	29	2.0	30	93	3	102	40	5	1	52	1.33
3787133--3787207	38	2.0	38	97	0	141	46	10	9	33	1.71
3787556--3787591	16	2.2	17	90	5	56	52	2	2	41	1.30
3789499--3789531	17	1.9	17	93	0	57	9	6	0	84	0.76
3789497--3789567	30	2.4	30	81	6	83	12	9	0	77	0.99
3789604--3789727	62	2.0	63	81	12	148	28	6	2	62	1.32
3809593--3809635	18	2.4	18	92	0	68	18	6	0	74	1.04
3809846--3809910	24	2.6	25	73	4	60	20	6	0	73	1.03
3810957--3811649	41	17.0	41	75	5	483	30	17	16	35	1.92
3810968--3811110	42	3.5	41	74	8	112	29	17	17	35	1.93
3810968--3811649	123	5.6	123	75	8	534	30	17	16	36	1.91
3811006--3811649	164	4.0	162	77	7	669	30	17	16	36	1.92
3810973--3811615	83	7.9	80	73	11	326	30	17	16	35	1.92
3811260--3811649	201	1.9	201	84	1	512	31	16	16	36	1.91
3814128--3814176	21	2.3	21	82	0	62	26	6	14	53	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3814396--3814480	44	1.9	44	85	4	118	31	12	17	37	1.88
3817686--3817892	105	2.0	104	86	2	290	41	13	10	34	1.79
3817699--3817921	105	2.1	105	82	4	263	42	13	11	32	1.80
3819600--3819716	26	4.5	26	93	0	180	17	25	11	44	1.83
3821165--3821205	2	20.5	2	100	0	82	48	0	0	51	1.00
3821218--3821276	15	3.8	15	80	14	66	27	0	5	67	1.11
3822378--3822463	2	43.5	2	86	6	122	48	2	1	47	1.22
3822513--3822561	21	2.3	21	92	0	80	48	4	4	42	1.40
3822555--3822579	11	2.3	11	100	0	50	56	8	0	36	1.29
3822691--3822729	17	2.3	17	86	8	53	41	12	2	43	1.56
3822698--3822729	17	1.9	16	93	6	55	40	12	3	43	1.58
3822709--3822803	28	3.4	28	84	5	129	40	9	9	41	1.70
3822831--3822878	22	2.2	22	88	7	71	37	6	12	43	1.68
3822846--3822885	22	1.9	22	85	10	57	40	5	10	45	1.60
3822873--3823011	2	67.0	2	67	19	63	43	5	3	46	1.44
3822723--3822931	106	2.0	106	79	10	230	42	8	7	41	1.64
3823026--3823082	27	2.1	27	87	6	80	49	3	1	45	1.29
3822981--3823069	36	2.5	36	81	3	110	50	6	3	39	1.45
3823092--3823133	22	1.9	22	85	9	59	35	7	14	42	1.73
3823264--3823347	27	3.2	25	80	9	78	44	5	7	42	1.56
3823277--3823393	27	4.4	27	84	2	130	41	5	5	47	1.50
3823362--3823396	15	2.4	14	95	4	61	45	5	0	48	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3823460--3823701	18	14.9	16	67	23	59	43	7	6	42	1.58
3823477--3823521	20	2.4	18	85	14	56	40	8	6	44	1.62
3823526--3823638	32	3.5	32	89	4	149	45	6	7	41	1.56
3823532--3823710	79	2.2	82	88	5	258	44	6	6	42	1.57
3823783--3823909	61	2.1	60	91	1	200	48	6	9	36	1.61
3824136--3824432	103	2.9	104	81	8	315	34	27	5	32	1.79
3824657--3824831	6	29.2	6	75	0	134	45	42	5	6	1.53
3824653--3824831	30	6.0	30	79	1	162	44	42	6	6	1.55
3824663--3824811	48	3.1	48	82	7	178	46	42	4	6	1.49
3827452--3827512	20	3.0	20	85	0	77	13	13	16	57	1.66
3827606--3827659	23	2.3	23	90	6	83	22	12	29	35	1.91
3828314--3828364	27	1.9	26	84	11	68	50	3	1	43	1.31
3828445--3828488	16	2.8	16	85	0	52	34	15	31	18	1.92
3832561--3832595	17	2.0	18	88	5	54	34	0	0	65	0.93
3834459--3834674	37	5.9	37	91	2	321	42	7	5	45	1.54
3834493--3834553	12	5.0	12	69	11	52	40	9	6	42	1.64
3835452--3835497	18	2.5	19	82	3	58	41	17	13	28	1.86
3835451--3835516	19	3.7	18	84	7	82	39	18	10	31	1.85
3835904--3835971	23	3.0	23	77	12	68	50	1	1	47	1.19
3835905--3835997	29	3.3	29	76	18	90	50	1	1	47	1.15
3836031--3836090	27	2.2	27	82	5	68	51	0	1	46	1.10
3836226--3836277	16	3.5	16	75	17	58	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3836776--3836814	4	9.5	4	88	5	51	79	0	2	17	0.84
3836890--3836999	35	3.0	37	71	17	104	79	0	8	12	0.94
3836934--3836993	20	3.2	19	77	15	63	85	0	6	8	0.76
3836887--3836995	12	9.7	11	73	10	62	80	0	8	11	0.90
3838428--3838743	37	8.8	37	81	9	338	46	6	3	43	1.46
3846086--3846129	20	2.3	20	84	7	56	47	6	25	20	1.74
3847525--3847587	32	1.9	33	83	6	83	58	0	17	23	1.38
3851096--3851162	21	3.2	21	84	0	80	31	22	8	37	1.85
3854413--3854447	17	2.1	17	100	0	70	22	34	20	22	1.97
3854976--3855018	21	2.0	21	95	0	77	41	11	13	32	1.81
3856857--3856913	13	4.4	13	90	0	87	31	22	14	31	1.93
3856849--3856913	26	2.5	26	84	0	94	30	21	16	30	1.96
3860504--3860529	5	5.2	5	100	0	52	19	0	80	0	0.71
3862340--3862381	20	2.1	20	82	8	50	47	16	7	28	1.73
3862991--3863171	92	2.0	92	83	0	227	24	17	24	33	1.96
3867384--3867424	20	2.0	20	86	9	57	24	19	2	53	1.57
3867516--3867556	19	2.2	19	90	0	64	26	21	0	51	1.48
3871065--3871116	20	2.6	20	90	0	86	40	15	23	21	1.91
3872016--3872078	24	2.6	24	79	0	72	12	28	34	23	1.92
3874919--3874973	20	2.7	20	78	10	58	63	5	14	16	1.48
3875734--3875788	28	2.0	28	100	0	110	32	21	14	30	1.93
3883692--3883757	19	3.5	19	80	15	75	3	19	1	75	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3886458--3886499	21	2.0	21	85	4	57	47	9	16	26	1.77
3886984--3887030	19	2.6	18	78	15	53	38	2	27	31	1.69
3888903--3889063	80	2.0	79	91	5	263	34	15	12	37	1.85
3893341--3893388	16	3.0	16	78	0	51	45	33	12	8	1.72
3894644--3895040	81	4.9	81	84	0	481	28	23	12	35	1.91
3894993--3895158	68	2.4	67	91	3	253	30	25	13	30	1.94
3895392--3895465	34	2.2	34	90	4	114	35	17	8	39	1.79
3895896--3895936	19	2.2	19	86	0	55	31	19	17	31	1.95
3895961--3896011	20	2.6	19	87	6	75	19	29	19	31	1.97
3897546--3897576	2	15.5	2	100	0	62	48	0	0	51	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21