genome.fa.s8756.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008756.1 Hibiscus syriacus cultivar Beakdansim tig00111848_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4584045

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   

This is table  8  of  21  ( 2443 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1609213--1609501	39	7.7	36	74	15	155	39	11	4	44	1.61
1609327--1609429	35	2.9	35	85	7	136	40	12	2	43	1.58
1611341--1611440	30	3.3	30	74	10	105	56	17	10	17	1.67
1612092--1612125	2	17.0	2	100	0	68	50	0	0	50	1.00
1613096--1613126	16	1.9	16	93	0	53	41	3	12	41	1.59
1613551--1613575	7	3.6	7	100	0	50	48	40	0	12	1.40
1613751--1613780	7	4.3	7	91	0	51	13	0	36	50	1.42
1625950--1625998	14	3.4	15	76	23	52	65	0	16	18	1.28
1631102--1631227	47	2.8	45	85	5	164	39	7	23	29	1.83
1631863--1632346	49	9.9	49	79	1	475	35	14	22	27	1.93
1631863--1632323	98	4.7	98	84	0	591	35	14	22	27	1.93
1631863--1632345	147	3.3	147	81	1	545	35	14	22	27	1.93
1632322--1632581	92	2.8	91	88	1	358	40	13	21	24	1.89
1632322--1632581	46	5.7	46	84	2	317	40	13	21	24	1.89
1637868--1638435	49	11.5	49	83	0	677	32	13	24	29	1.94
1637848--1638435	98	6.0	98	89	1	890	32	13	24	28	1.94
1638409--1638664	46	5.6	46	89	0	343	41	13	21	23	1.88
1638405--1638659	138	1.8	138	88	0	384	41	12	21	23	1.88
1644373--1644424	21	2.5	21	100	0	104	44	7	15	32	1.75
1644703--1644764	31	2.0	31	100	0	124	41	12	12	32	1.81
1645210--1645249	15	2.7	15	96	0	71	57	0	2	40	1.12
1650572--1650614	17	2.5	17	96	0	77	51	30	0	18	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1651299--1651341	16	2.6	17	81	3	52	65	13	9	11	1.48
1663823--1663891	15	4.5	15	91	8	104	73	0	13	13	1.09
1663823--1663891	29	2.2	32	90	10	108	73	0	13	13	1.09
1665242--1665692	55	8.2	55	86	0	616	31	13	25	29	1.93
1665242--1665747	165	3.1	163	84	5	588	32	13	24	29	1.94
1668664--1668703	18	2.2	19	86	4	55	42	0	2	55	1.13
1673592--1673633	20	2.0	21	86	13	59	50	0	11	38	1.40
1676329--1676383	27	2.0	27	89	6	85	16	25	14	43	1.86
1677146--1677175	10	3.0	10	95	0	51	40	36	20	3	1.69
1677440--1677500	32	1.9	32	82	0	77	62	0	1	36	1.05
1682513--1682537	2	12.5	2	100	0	50	48	0	0	52	1.00
1684954--1685011	24	2.4	24	97	0	107	12	12	22	53	1.70
1684966--1685017	24	2.4	21	87	12	70	11	11	21	55	1.66
1685391--1685470	31	2.6	31	97	0	151	41	27	17	13	1.87
1695348--1695389	15	2.7	16	79	13	52	61	0	9	28	1.27
1695564--1695619	24	2.4	22	80	16	60	69	0	3	26	1.04
1700032--1700077	23	2.1	23	88	8	69	63	0	32	4	1.14
1706019--1706051	16	2.1	16	100	0	66	36	12	12	39	1.80
1712486--1712522	18	2.1	18	94	0	65	35	16	5	43	1.71
1721395--1721424	14	2.1	15	93	6	53	86	0	0	13	0.57
1726743--1726877	27	5.1	27	66	20	95	39	11	22	25	1.89
1726807--1726891	27	3.2	27	71	15	86	42	8	24	24	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1726732--1727040	53	5.9	53	87	4	382	36	13	22	26	1.92
1726981--1727125	59	2.4	59	87	4	202	36	14	22	26	1.93
1727166--1727272	46	2.3	46	88	0	151	42	12	19	26	1.86
1732137--1732328	27	7.2	27	63	20	100	38	10	24	26	1.88
1732119--1732590	53	8.9	53	88	1	660	36	12	23	27	1.91
1732698--1732723	12	2.2	12	100	0	52	53	0	23	23	1.46
1733372--1733423	26	2.0	25	88	3	77	30	0	9	59	1.29
1734013--1734051	21	1.9	20	84	5	51	28	15	20	35	1.93
1741959--1742163	95	2.2	94	86	2	277	33	16	24	25	1.96
1742516--1742829	55	5.8	55	83	2	339	30	19	19	31	1.96
1742538--1742790	107	2.3	109	85	2	321	30	18	18	32	1.95
1744976--1745161	95	2.0	95	84	4	250	32	16	24	26	1.96
1745025--1745200	95	1.9	95	80	7	214	31	15	25	28	1.96
1745544--1745894	110	3.2	110	81	6	351	30	19	19	31	1.96
1745544--1745894	55	6.4	55	80	4	300	30	19	19	31	1.96
1745542--1745847	165	1.9	165	83	4	402	30	19	18	31	1.96
1746157--1746450	147	2.0	147	100	0	588	31	12	18	36	1.89
1746975--1747237	73	3.6	71	79	8	239	31	17	12	39	1.86
1747188--1747269	36	2.2	37	82	8	105	30	15	7	46	1.73
1749463--1749516	24	2.3	24	93	3	92	46	12	14	25	1.81
1749196--1749593	147	2.7	145	81	7	436	43	14	16	25	1.86
1749196--1749593	145	2.7	143	81	7	387	43	14	16	25	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1756897--1757047	40	3.8	40	88	0	205	28	25	20	25	1.99
1756897--1757063	80	2.1	79	86	2	235	29	25	20	25	1.99
1757168--1757218	22	2.5	21	84	9	61	41	11	5	41	1.66
1760819--1760895	2	39.5	2	94	5	140	49	0	0	50	1.00
1766092--1766119	2	14.0	2	100	0	56	50	0	0	50	1.00
1766208--1766636	81	5.3	81	89	1	576	28	22	12	36	1.90
1766251--1766639	161	2.4	162	89	1	584	28	23	12	36	1.90
1766251--1766639	80	4.8	81	91	0	575	28	23	12	36	1.90
1766605--1766792	68	2.8	68	86	1	261	27	23	14	34	1.94
1767462--1767658	95	2.1	95	84	5	256	26	20	14	38	1.92
1779260--1779553	146	2.0	148	98	1	574	44	14	13	26	1.83
1780705--1780731	5	5.4	5	100	0	54	18	0	0	81	0.69
1782851--1782903	24	2.2	24	79	0	61	58	13	5	22	1.56
1785015--1785376	176	2.1	176	97	0	679	34	6	26	32	1.83
1785647--1785722	5	14.8	5	70	19	50	72	2	1	23	1.05
1785639--1785696	28	2.0	31	83	10	77	65	5	3	25	1.29
1785657--1785712	14	3.7	15	80	9	60	67	3	0	28	1.07
1785676--1785724	25	2.0	24	88	4	71	73	0	2	24	0.94
1785792--1786181	191	2.0	192	91	3	633	31	17	10	39	1.84
1793282--1793478	97	2.0	97	100	0	394	28	27	18	25	1.98
1793526--1793656	43	3.0	43	88	0	199	20	18	21	39	1.92
1796690--1797096	42	9.9	42	74	6	235	32	16	19	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1796751--1796836	41	2.1	41	84	4	111	39	13	15	31	1.86
1796916--1797214	40	7.3	40	76	4	251	34	17	19	29	1.94
1796908--1797214	123	2.5	122	85	3	386	33	16	19	30	1.94
1799885--1799928	21	2.0	22	82	4	54	34	20	11	34	1.88
1805316--1805350	15	2.4	15	95	4	63	11	11	0	77	1.00
1808452--1808820	184	2.0	185	99	0	731	30	17	19	32	1.95
1810167--1810278	57	2.0	57	85	0	152	44	21	11	22	1.84
1818132--1818158	2	13.5	2	100	0	54	51	0	0	48	1.00
1819210--1819254	13	3.4	13	80	17	56	44	8	0	46	1.34
1819211--1819262	27	1.9	27	88	0	77	44	7	0	48	1.31
1819723--1819843	2	61.0	2	78	14	108	42	4	4	47	1.44
1819811--1819866	24	2.3	24	84	0	67	35	10	7	46	1.66
1819755--1819862	38	2.9	37	82	11	141	37	9	6	47	1.62
1819858--1819902	22	2.0	22	82	8	54	37	13	0	48	1.42
1820025--1820059	11	3.2	11	87	0	52	40	22	5	31	1.78
1823272--1823447	90	2.0	90	91	0	289	44	7	10	37	1.66
1828322--1828498	89	2.0	90	88	1	266	45	6	10	37	1.66
1835062--1835242	90	2.0	90	100	0	362	32	17	16	34	1.92
1836164--1836216	21	2.6	20	90	3	79	28	22	26	22	1.99
1836239--1836270	16	2.0	16	100	0	64	25	18	31	25	1.98
1836239--1836312	21	3.8	19	88	11	91	25	18	33	21	1.96
1836381--1836449	29	2.3	29	92	2	111	49	14	4	31	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1836560--1836599	21	1.9	21	89	0	62	50	10	10	30	1.69
1838385--1838436	19	2.7	19	100	0	104	26	34	21	17	1.95
1838319--1838481	83	2.0	82	84	10	215	29	26	19	24	1.98
1845903--1845946	21	2.1	21	82	0	52	11	40	15	31	1.83
1847007--1847131	65	1.9	64	82	7	155	34	21	16	27	1.95
1847036--1847192	65	2.4	64	78	5	147	31	22	17	28	1.97
1848809--1848848	21	1.9	22	90	10	66	12	10	40	37	1.77
1849046--1849143	21	4.7	21	74	3	90	24	20	32	22	1.98
1849044--1849143	42	2.4	42	83	3	121	25	20	33	22	1.97
1849212--1849275	29	2.2	30	88	2	94	50	15	6	28	1.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21