genome.fa.s8756.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008756.1 Hibiscus syriacus cultivar Beakdansim tig00111848_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4584045

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   

This is table  2  of  21  ( 2443 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
163072--163116	20	2.4	18	82	10	56	33	13	24	28	1.93
164094--164131	16	2.4	16	95	0	67	31	5	13	50	1.63
164394--164428	14	2.4	15	90	4	54	62	0	20	17	1.32
168860--168903	9	4.8	9	81	13	54	29	4	0	65	1.12
168857--168909	29	1.9	27	85	11	72	33	3	0	62	1.13
168859--168897	20	2.0	20	100	0	78	33	5	0	61	1.18
168855--168934	26	3.1	25	72	22	67	40	2	0	57	1.12
170181--170245	30	2.1	31	91	2	105	16	47	23	12	1.80
170180--170245	18	4.0	18	72	22	72	16	48	22	12	1.79
170201--170234	13	2.7	13	95	4	61	14	50	23	11	1.76
170250--170388	29	4.7	29	90	3	197	23	9	20	46	1.79
170250--170409	58	2.7	58	85	4	160	23	8	21	46	1.79
170365--170437	29	2.6	28	75	16	69	27	6	21	43	1.78
177597--177736	29	4.8	29	86	0	190	25	8	20	45	1.79
177600--177758	58	2.7	57	82	6	158	26	8	19	45	1.79
177714--177781	29	2.3	29	80	5	75	26	8	20	44	1.81
180321--180367	26	1.9	23	83	12	58	12	19	2	65	1.35
185291--185328	2	19.0	2	100	0	76	50	0	0	50	1.00
189673--189735	29	2.1	30	82	8	76	58	14	6	20	1.57
190338--190364	14	1.9	14	100	0	54	29	25	22	22	1.99
198785--198867	21	3.9	21	73	13	80	24	34	25	15	1.95
203711--203771	31	2.0	31	87	12	90	40	26	6	26	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
204988--205028	17	2.4	17	95	0	73	12	36	26	24	1.91
211590--211789	96	2.1	96	80	0	220	28	13	17	41	1.86
214571--214634	27	2.4	26	85	10	85	48	0	4	46	1.23
214938--215024	44	2.0	44	88	4	131	25	14	20	39	1.91
216736--216830	2	52.5	2	72	22	68	54	1	2	42	1.19
216718--216828	15	7.6	15	76	13	99	54	1	1	42	1.21
217038--217119	42	2.0	42	82	0	101	36	21	19	21	1.95
217937--218076	65	2.2	64	84	2	181	30	21	10	38	1.86
218765--218849	42	2.0	42	88	0	125	30	23	14	31	1.94
219117--219168	22	2.4	22	100	0	104	21	19	21	38	1.94
224797--224850	18	2.9	18	84	13	65	50	7	5	37	1.54
226131--226236	2	59.5	2	70	22	67	58	1	0	39	1.09
226113--226237	14	8.6	14	78	16	114	57	2	0	40	1.12
231044--231083	15	2.7	15	100	0	80	42	20	12	25	1.86
234465--234493	14	2.0	15	93	6	51	68	0	17	13	1.20
235202--235229	2	14.0	2	100	0	56	50	0	0	50	1.00
238602--238652	3	16.7	3	80	11	59	31	3	0	64	1.11
238602--238654	23	2.3	24	83	9	74	30	3	0	66	1.10
239648--239677	15	2.1	15	93	6	53	76	0	10	13	1.01
244896--244934	15	2.7	15	92	4	62	61	2	0	35	1.10
244876--244934	14	4.2	14	81	12	68	59	3	0	37	1.14
245051--245202	55	2.8	55	85	2	189	26	21	17	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
264629--264849	44	5.0	44	88	0	307	41	13	19	25	1.88
270822--270906	44	1.9	44	90	0	134	41	12	21	24	1.88
275314--275380	34	2.0	34	87	0	98	23	28	16	31	1.96
275839--275885	22	2.1	22	92	0	76	27	23	27	21	1.99
277881--277923	22	2.0	22	85	0	59	34	16	25	23	1.95
283254--283289	17	2.1	17	94	0	63	19	5	25	50	1.69
283685--283758	32	2.3	32	75	9	78	14	9	27	48	1.75
283680--283764	16	5.3	16	71	13	50	12	9	24	52	1.69
284007--284193	5	37.4	5	100	0	374	20	0	39	40	1.53
285768--285808	16	2.8	14	85	7	55	2	14	0	82	0.76
285766--285811	15	2.9	17	78	15	55	4	15	0	80	0.86
293075--293222	78	1.9	78	81	9	178	41	7	6	44	1.59
295065--295104	18	2.2	18	100	0	80	15	25	25	35	1.94
302461--302499	19	2.1	19	90	4	62	46	23	5	25	1.73
304040--304074	2	17.5	2	100	0	70	48	0	0	51	1.00
305993--306127	18	7.7	17	65	9	65	54	0	0	44	1.05
305992--306096	5	21.0	5	100	0	210	60	0	0	40	0.97
309128--309255	54	2.4	53	87	6	172	55	10	9	24	1.64
309499--309542	21	2.0	22	86	4	63	25	0	2	72	0.96
318136--318182	2	23.5	2	100	0	94	51	0	0	48	1.00
320067--320112	17	2.5	20	75	20	62	34	13	23	28	1.92
320076--320112	17	2.2	17	100	0	74	35	10	24	29	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
330715--330776	31	2.0	31	100	0	124	25	29	9	35	1.88
340250--340519	44	6.2	44	83	1	310	22	25	18	32	1.97
344337--344371	15	2.3	15	100	0	70	40	31	8	20	1.82
345344--345378	15	2.3	15	95	0	61	42	28	8	20	1.81
349280--349333	21	2.5	22	84	6	74	14	22	27	35	1.93
349294--349341	22	2.2	22	88	3	71	16	20	29	33	1.95
355897--355975	21	3.5	22	81	15	83	15	21	25	37	1.92
355941--355986	24	1.9	24	90	0	74	15	17	26	41	1.88
356729--356786	18	3.2	18	92	0	98	24	34	15	25	1.95
356766--356839	27	2.7	27	85	0	112	27	32	13	27	1.94
358648--358816	51	3.3	51	87	0	250	18	12	11	57	1.64
362747--362807	14	4.4	14	79	8	70	77	1	21	0	0.86
362746--362825	15	5.3	15	78	13	76	77	1	20	1	0.91
362773--362807	7	4.9	7	86	6	52	82	0	17	0	0.66
362774--362825	8	6.5	8	79	14	54	82	0	15	1	0.75
362746--362825	42	2.0	40	83	14	101	77	1	20	1	0.91
365363--365535	67	2.6	67	85	2	233	30	16	12	40	1.86
366035--366422	137	2.8	137	82	4	467	35	25	15	23	1.94
366909--366949	13	3.2	13	80	12	50	29	4	0	65	1.13
368223--368438	51	4.2	51	88	0	297	18	12	11	57	1.64
368261--368346	29	3.2	29	65	27	80	17	11	11	59	1.61
368731--368784	2	27.5	2	96	3	101	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
371074--371113	20	2.0	21	90	5	64	32	0	27	40	1.57
372921--372964	19	2.3	19	100	0	88	27	0	15	56	1.40
374570--374600	15	2.1	15	100	0	62	32	0	0	67	0.91
379369--379402	14	2.3	15	85	10	52	32	8	8	50	1.64
379829--379954	55	2.3	55	78	15	131	49	0	0	49	1.12
380168--380256	41	2.1	42	89	2	135	50	17	11	20	1.76
381653--381876	63	3.6	63	91	0	340	42	16	18	22	1.88
381730--381849	36	3.6	37	67	25	104	42	15	17	24	1.88
381846--381901	6	8.5	6	83	13	58	50	14	19	16	1.79
381829--381902	27	2.7	27	89	4	105	48	14	18	17	1.81
387692--387755	27	2.4	26	75	12	67	68	1	10	18	1.27
387793--387860	9	7.4	9	75	15	59	80	1	4	13	0.92
387793--387908	50	2.4	49	81	9	132	75	0	3	19	0.99
387788--387908	25	4.9	24	72	18	81	75	0	3	20	1.00
387795--387871	29	2.7	27	78	11	75	81	1	3	12	0.88
387859--387944	36	2.3	38	84	10	113	66	0	3	30	1.08
387854--387973	42	2.8	42	77	19	113	65	0	3	30	1.14
389270--389573	110	2.8	105	83	8	396	22	17	25	34	1.96
390151--390238	32	2.8	32	82	3	106	34	22	14	28	1.94
395671--395733	26	2.4	26	75	15	67	69	1	9	19	1.24
395847--395962	2	60.5	2	74	17	59	60	0	1	37	1.13
395843--395975	49	2.8	48	80	14	157	61	1	1	35	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
396883--396916	13	2.6	13	95	0	59	23	20	23	32	1.98
397004--397042	3	12.7	3	83	5	51	64	2	0	33	1.08
398997--399040	21	2.1	21	91	0	70	29	0	15	54	1.42
399017--399070	28	1.9	28	96	0	99	29	0	12	57	1.36
399046--399148	45	2.3	44	81	5	118	37	0	9	51	1.42
399551--399610	17	3.4	17	80	13	75	43	0	8	48	1.33
399636--399691	17	3.4	17	82	5	78	39	1	8	50	1.44
399636--399683	16	2.9	16	90	3	69	39	2	8	50	1.44
399662--399714	21	2.6	20	79	5	70	37	5	7	49	1.55
402942--403078	26	5.4	25	77	14	111	41	2	11	44	1.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21