genome.fa.s8756.2.7.7.80.10.50.1000.12.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008756.1 Hibiscus syriacus cultivar Beakdansim tig00111848_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4584045

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   

This is table  12  of  21  ( 2443 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2579143--2579172	14	2.1	14	100	0	60	80	0	20	0	0.72
2591320--2591364	16	2.8	16	83	10	56	28	8	6	55	1.56
2592106--2592415	83	3.7	83	94	1	514	26	12	22	38	1.90
2593071--2593853	113	6.9	114	86	4	1069	37	12	20	29	1.89
2593068--2593852	231	3.4	227	94	2	1342	37	12	20	30	1.89
2594170--2594279	3	36.7	3	89	7	170	35	0	0	63	1.01
2594816--2594847	15	2.1	15	94	0	55	78	0	21	0	0.76
2595540--2595580	20	2.0	21	85	4	57	36	2	2	58	1.24
2600722--2600967	2	124.0	2	70	16	147	47	3	3	45	1.36
2601035--2601089	19	2.8	20	83	5	76	41	1	32	23	1.65
2601057--2601100	19	2.2	20	88	4	63	47	0	25	27	1.52
2601239--2601291	16	3.1	16	70	15	52	32	5	13	49	1.65
2601222--2601291	35	2.0	35	100	0	140	34	5	11	48	1.63
2601222--2601279	19	3.2	19	71	14	68	36	5	10	48	1.60
2601338--2601373	15	2.4	15	95	0	63	50	5	2	41	1.40
2601520--2601560	7	6.0	7	88	2	57	39	41	0	19	1.52
2601605--2601647	19	2.3	19	92	4	70	51	6	0	41	1.29
2601734--2601764	7	4.4	7	91	0	53	48	35	0	16	1.46
2601734--2601821	14	6.3	14	73	5	61	48	25	0	26	1.51
2601747--2601821	28	2.7	28	81	8	98	49	21	0	29	1.50
2601738--2601813	21	3.6	21	74	10	57	48	23	0	27	1.51
2601936--2602004	37	1.9	36	82	5	86	43	10	8	37	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2601950--2602100	57	2.6	58	84	7	193	43	8	8	39	1.66
2601962--2602100	55	2.5	57	85	4	185	43	8	7	39	1.65
2602014--2602047	13	2.5	13	90	4	50	47	8	2	41	1.50
2601993--2602032	20	2.0	20	85	0	53	47	5	10	37	1.59
2602025--2602078	24	2.3	23	84	6	65	40	7	5	46	1.55
2602131--2602183	21	2.5	21	87	0	79	39	7	5	47	1.56
2602194--2602449	15	16.9	14	67	25	82	45	3	2	48	1.34
2602110--2602322	117	1.8	117	83	8	281	42	5	4	48	1.45
2602201--2602448	65	3.8	65	73	17	208	45	3	2	48	1.34
2602298--2602336	14	2.8	13	85	11	51	43	5	2	48	1.38
2602298--2602379	31	2.8	29	80	14	87	42	3	3	50	1.37
2602394--2602445	21	2.5	20	82	17	63	48	0	1	50	1.12
2603105--2603159	16	3.4	16	97	0	101	38	14	29	18	1.90
2603210--2603330	64	1.9	65	84	8	167	18	20	29	31	1.96
2604985--2605022	18	2.1	19	85	5	51	42	5	18	34	1.73
2606800--2606843	21	2.2	20	84	12	54	22	9	9	59	1.56
2606857--2606885	10	3.0	10	95	5	51	89	0	0	10	0.48
2610664--2610695	16	1.9	17	93	6	57	62	0	9	28	1.26
2615062--2615141	34	2.4	34	97	0	151	28	20	15	36	1.92
2624872--2624962	45	2.0	46	84	2	121	26	18	25	29	1.98
2629340--2629409	32	2.2	33	97	2	133	31	11	5	51	1.61
2630369--2630483	51	2.3	51	84	6	144	48	8	4	38	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2632651--2632816	75	2.2	75	90	1	253	39	19	7	32	1.81
2635460--2635503	22	2.0	23	82	13	56	52	9	11	27	1.67
2640622--2641621	253	4.0	253	85	4	1427	32	12	21	33	1.91
2640666--2641660	496	2.0	496	98	0	1902	32	12	21	33	1.90
2646216--2646269	22	2.5	22	96	0	99	27	24	9	38	1.86
2654712--2654742	16	1.9	16	93	0	53	45	32	6	16	1.72
2655205--2655276	34	2.2	33	84	2	90	25	27	15	31	1.95
2655955--2656012	18	3.0	19	80	14	82	51	10	10	27	1.68
2657150--2657189	19	2.2	18	90	4	62	32	17	2	47	1.61
2658626--2658656	16	1.9	16	93	0	53	45	32	6	16	1.72
2659129--2659193	34	1.9	34	87	0	94	24	24	13	36	1.92
2667205--2667250	22	2.1	22	100	0	92	34	13	21	30	1.91
2675488--2675530	20	2.1	20	82	4	50	67	2	0	30	1.03
2675514--2675612	29	3.6	29	73	15	77	52	8	2	37	1.43
2678122--2678162	2	21.0	2	95	5	75	48	0	0	51	1.00
2678886--2678971	38	2.2	39	87	2	120	23	20	29	26	1.99
2681330--2681372	23	2.0	21	86	9	59	4	13	4	76	1.10
2682969--2683008	20	1.9	21	85	10	55	20	15	17	47	1.83
2689277--2689330	15	3.7	15	72	13	51	18	1	7	72	1.17
2689050--2689393	170	2.0	172	98	1	674	25	17	10	46	1.80
2703988--2704044	30	1.9	30	88	0	87	33	19	19	28	1.96
2704862--2704910	22	2.2	22	78	7	55	38	18	4	38	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2709034--2709227	99	2.0	99	90	0	307	34	17	18	29	1.94
2709409--2710229	85	9.7	85	81	4	940	34	20	19	25	1.96
2709409--2710229	254	3.2	253	82	3	1006	34	20	19	25	1.96
2709439--2710229	169	4.7	169	89	1	1131	33	20	18	26	1.96
2711823--2711867	16	2.8	16	96	3	81	15	11	0	73	1.10
2715617--2715723	55	1.9	55	90	0	169	41	11	17	29	1.84
2715970--2716012	18	2.4	18	80	0	50	62	13	9	13	1.53
2719239--2719317	33	2.4	33	79	8	81	8	20	16	54	1.68
2722113--2722207	30	3.1	31	82	7	106	21	11	6	61	1.52
2722353--2722752	139	2.9	136	78	7	437	30	13	14	41	1.84
2723459--2723523	27	2.4	27	100	0	130	32	9	3	55	1.47
2724580--2724631	21	2.5	21	81	3	61	38	19	25	17	1.93
2724620--2724734	20	5.7	20	82	6	115	32	25	18	24	1.97
2724617--2724744	61	2.1	61	86	0	175	35	24	16	24	1.95
2724922--2724965	22	2.0	22	95	0	79	20	45	15	18	1.85
2725209--2725252	20	2.2	20	87	0	61	11	18	20	50	1.77
2726571--2726615	18	2.5	18	88	0	72	28	42	13	15	1.85
2727091--2727136	20	2.3	20	88	0	65	36	26	21	15	1.93
2727130--2727188	19	3.4	19	71	22	56	49	18	16	15	1.80
2727146--2727204	14	3.9	14	72	20	55	49	22	16	11	1.78
2727130--2727217	33	2.7	33	92	0	149	48	20	17	13	1.80
2727233--2727328	14	6.3	14	73	20	77	10	15	22	51	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2727244--2727340	33	3.0	33	98	1	187	12	17	21	48	1.80
2727317--2727384	20	3.5	19	78	6	73	14	22	23	39	1.91
2727749--2727837	42	2.1	42	85	0	124	21	43	14	20	1.87
2729246--2729284	14	2.8	14	84	0	51	35	0	17	46	1.49
2729421--2729507	19	4.8	19	89	10	139	47	17	21	13	1.82
2729411--2729507	38	2.8	33	85	14	149	46	18	21	13	1.83
2729526--2729621	20	4.8	20	76	10	97	17	20	20	40	1.91
2729514--2729601	40	2.4	36	81	12	108	17	20	20	42	1.90
2729526--2729621	40	2.4	41	80	5	115	17	20	20	40	1.91
2729844--2729900	20	2.8	20	100	0	114	28	21	24	26	1.99
2730179--2730212	12	2.9	12	86	4	52	17	41	5	35	1.74
2733326--2733418	19	5.4	19	63	23	62	44	19	20	16	1.87
2733313--2733420	33	3.3	33	87	5	164	42	20	22	14	1.88
2733583--2733619	14	2.6	14	91	0	65	45	24	0	29	1.53
2735008--2735087	42	1.9	42	84	0	106	23	17	36	22	1.95
2735309--2735493	91	2.0	90	91	6	300	47	18	12	21	1.82
2737204--2737338	33	3.9	33	87	5	153	43	21	22	11	1.85
2737179--2737343	19	9.1	19	75	15	143	44	20	23	12	1.85
2737179--2737343	33	4.6	35	81	9	149	44	20	23	12	1.85
2737339--2737383	19	2.4	19	92	0	72	8	15	26	48	1.74
2737936--2738047	20	5.6	20	81	6	75	22	19	20	37	1.94
2737958--2738047	41	2.2	40	86	5	119	21	20	20	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2738044--2738103	20	2.9	20	76	14	59	41	20	20	18	1.90
2737956--2738088	61	2.2	61	79	5	144	27	21	18	33	1.96
2738037--2738109	21	3.5	21	79	7	78	36	20	20	21	1.95
2739439--2739498	23	2.7	23	94	2	104	30	10	25	35	1.88
2747945--2748153	38	5.6	37	81	6	210	46	6	2	44	1.43
2747944--2748057	39	3.0	37	76	14	99	46	7	2	43	1.44
2748086--2748110	11	2.3	11	100	0	50	44	8	8	40	1.63
2747945--2748154	74	2.8	72	77	8	199	47	6	2	43	1.43
2748880--2749506	84	7.6	81	78	8	609	23	21	25	29	1.99
2748886--2749521	165	3.8	165	93	1	983	23	21	25	29	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21