genome.fa.s8756.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008756.1 Hibiscus syriacus cultivar Beakdansim tig00111848_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4584045

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   

This is table  9  of  21  ( 2443 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1849223--1849281	29	2.0	30	93	6	102	44	16	5	33	1.70
1860848--1860998	78	1.9	78	93	0	257	31	14	20	33	1.93
1869578--1870043	111	4.2	111	87	1	641	29	16	22	31	1.96
1869610--1870040	220	1.9	221	89	3	670	29	16	22	30	1.96
1869971--1870485	66	7.8	66	95	0	899	32	17	20	29	1.96
1875158--1875216	4	14.8	4	81	10	50	72	0	6	20	1.06
1878818--1878847	11	2.7	11	89	0	51	46	10	20	23	1.80
1881227--1881258	15	2.0	17	88	11	50	25	28	9	37	1.87
1881908--1881988	40	2.0	40	100	0	162	58	14	7	19	1.60
1883738--1883837	3	34.0	3	83	7	71	43	1	0	56	1.06
1886620--1886661	22	2.0	21	90	4	66	23	7	2	66	1.28
1888770--1888818	16	3.3	16	67	21	52	42	10	0	46	1.37
1888772--1888828	28	2.0	28	100	0	114	47	10	0	42	1.38
1888894--1888938	10	4.5	10	78	10	56	86	0	13	0	0.57
1888895--1888940	14	3.1	15	87	9	67	84	0	15	0	0.62
1888892--1888940	24	2.1	22	82	10	62	83	0	16	0	0.64
1888897--1888941	15	3.0	15	84	9	65	82	0	17	0	0.68
1891173--1891825	123	5.3	123	90	1	973	37	16	19	26	1.92
1891808--1891842	17	2.1	17	94	0	61	54	11	11	22	1.68
1891690--1891965	140	2.0	140	91	1	446	41	14	19	24	1.89
1891825--1892085	123	2.2	120	90	2	396	40	15	18	25	1.90
1892362--1892434	3	25.0	3	73	15	64	36	2	0	60	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1896127--1896220	45	2.1	45	89	0	143	55	18	10	15	1.69
1896358--1896415	29	2.0	29	83	6	73	34	8	8	48	1.65
1899478--1899511	14	2.4	14	90	9	52	44	0	5	50	1.26
1903790--1903841	3	17.0	3	84	11	70	32	1	0	65	1.04
1905297--1905362	30	2.2	30	84	10	82	15	15	12	57	1.65
1909685--1909731	20	2.3	21	82	10	62	53	29	0	17	1.44
1909701--1909731	10	3.1	10	100	0	62	51	29	0	19	1.47
1910289--1910353	30	2.3	28	80	12	78	43	12	3	41	1.58
1910453--1910581	65	2.0	65	80	8	147	29	13	14	41	1.85
1910514--1910590	36	2.3	34	84	13	97	31	14	14	40	1.85
1910549--1910609	32	1.9	32	83	6	79	32	18	9	39	1.83
1910568--1910722	67	2.3	66	81	4	168	29	16	13	40	1.86
1910707--1910777	29	2.5	29	81	2	81	36	15	11	36	1.83
1910621--1910795	95	1.8	96	83	1	235	28	16	14	40	1.88
1910870--1910957	29	3.1	29	80	3	106	23	20	13	42	1.88
1912065--1912114	3	16.0	3	84	12	57	32	0	2	66	1.03
1912335--1912442	53	2.0	53	98	0	207	20	37	17	24	1.93
1913694--1913758	30	2.2	30	86	5	87	15	15	12	56	1.67
1914018--1914302	21	13.7	21	77	12	116	23	20	20	36	1.95
1914071--1914295	84	2.7	82	78	10	269	23	19	19	37	1.94
1914081--1914302	61	3.6	62	83	8	240	23	19	19	37	1.94
1914388--1914424	6	6.2	6	100	0	74	35	48	16	0	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1914922--1914955	12	3.1	11	91	8	52	0	17	52	29	1.45
1915054--1915211	21	7.6	21	67	20	100	35	24	18	20	1.96
1915040--1915205	42	4.0	42	94	1	282	36	23	18	21	1.95
1915199--1915250	20	2.6	20	100	0	104	38	17	21	23	1.93
1915240--1915279	21	1.9	21	94	0	71	27	20	27	25	1.99
1915288--1915342	21	2.6	21	91	0	83	30	29	21	18	1.97
1915166--1915501	111	3.0	111	92	1	541	31	20	23	24	1.98
1915410--1915450	21	2.0	21	95	0	73	31	26	17	24	1.97
1915468--1915514	21	2.2	21	96	0	85	14	19	36	29	1.92
1915673--1915716	19	2.3	19	84	7	54	27	4	13	54	1.58
1918286--1918333	22	2.2	22	100	0	96	29	18	22	29	1.98
1923721--1923759	21	1.9	19	85	10	51	23	12	5	58	1.54
1923721--1923759	20	2.0	20	85	10	53	23	12	5	58	1.54
1944204--1944228	11	2.3	11	100	0	50	84	0	8	8	0.79
1955288--1955347	20	3.0	20	100	0	120	30	5	30	35	1.79
1962504--1962991	54	9.0	54	84	2	523	32	17	15	33	1.92
1962508--1962991	163	3.0	160	83	2	563	32	17	15	33	1.92
1973844--1974149	54	5.7	54	87	4	386	32	16	18	31	1.94
1973826--1974126	106	2.8	106	85	5	376	31	16	19	32	1.94
1976102--1976137	18	2.0	18	88	0	54	61	0	11	27	1.30
1995812--1995838	14	1.9	14	100	0	54	29	25	22	22	1.99
1997516--1997557	3	14.0	3	100	0	84	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1997556--1997603	3	15.7	3	95	4	87	35	0	0	64	0.94
1997619--1997660	22	1.9	22	95	0	75	40	40	2	16	1.62
1998493--1998521	12	2.3	13	94	5	51	27	3	0	68	1.05
2002393--2002614	106	2.1	106	82	6	259	34	22	18	24	1.96
2002550--2003024	254	1.9	249	81	3	567	34	21	17	26	1.96
2002866--2003104	124	1.9	125	84	2	320	33	20	16	28	1.95
2003131--2003296	84	2.0	85	86	3	237	34	24	16	24	1.96
2003643--2003680	3	12.0	3	89	10	58	0	31	0	68	0.90
2003643--2003681	10	4.0	10	84	15	55	0	30	0	69	0.89
2003644--2003680	13	2.8	13	100	0	74	0	29	0	70	0.88
2004987--2005053	23	3.0	22	80	4	62	19	26	23	29	1.98
2011166--2011218	20	2.7	20	100	0	106	16	16	35	30	1.92
2011846--2011905	23	2.6	23	91	0	93	18	26	28	26	1.98
2012936--2012995	22	2.8	21	90	5	93	41	43	0	15	1.46
2013648--2013716	13	5.1	14	77	16	51	15	4	1	78	0.98
2016506--2016745	81	3.0	80	85	3	329	24	17	21	36	1.95
2033016--2033441	215	2.0	216	87	3	626	33	18	16	31	1.93
2035390--2035429	21	2.0	20	90	5	62	0	22	0	77	0.77
2035387--2035504	9	12.8	9	73	13	53	6	15	0	77	0.96
2035405--2035529	21	5.8	21	70	17	69	8	12	0	79	0.94
2035396--2035508	19	6.1	18	73	15	79	7	13	0	79	0.92
2035426--2035474	13	3.8	13	83	8	64	16	4	0	79	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2035445--2035517	10	7.2	10	79	13	69	8	12	0	79	0.93
2035452--2035528	10	7.7	10	73	13	61	6	14	0	79	0.92
2036223--2036486	54	4.9	54	88	0	386	25	17	20	36	1.94
2044640--2044679	21	1.9	21	90	10	64	32	10	5	52	1.56
2050171--2050233	31	2.0	33	84	12	87	23	25	30	20	1.99
2052944--2052986	17	2.5	17	100	0	86	41	13	20	23	1.88
2057668--2057719	24	2.2	24	86	3	70	71	0	1	26	0.97
2059651--2059693	19	2.2	20	87	4	61	44	6	18	30	1.76
2073603--2073632	14	2.1	14	93	0	51	63	0	0	36	0.95
2076320--2076408	40	2.2	40	95	0	160	32	22	13	31	1.93
2076475--2076517	20	2.2	20	91	0	68	37	11	16	34	1.85
2076868--2076921	23	2.3	24	87	3	74	20	37	29	12	1.90
2078023--2078062	20	1.9	22	90	10	66	35	35	5	25	1.78
2087463--2087505	20	2.2	20	86	0	59	34	11	18	34	1.87
2093572--2093619	21	2.3	21	85	7	62	20	0	20	58	1.40
2093809--2093904	24	4.2	23	71	10	63	58	16	12	12	1.63
2093949--2093993	23	2.0	23	90	0	72	64	15	4	15	1.44
2095857--2095928	17	4.2	17	80	3	72	38	9	13	37	1.78
2095884--2095927	18	2.5	18	85	10	56	43	11	9	36	1.72
2097066--2097102	15	2.5	15	90	0	56	16	27	0	56	1.40
2099626--2099707	17	4.8	17	74	12	71	41	9	12	36	1.76
2100074--2100128	28	2.0	28	88	0	83	25	40	20	14	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2100172--2100204	15	2.2	15	100	0	66	30	27	18	24	1.98
2102254--2102364	56	2.0	56	89	1	170	36	10	9	42	1.73
2103672--2103745	3	25.0	3	80	2	87	39	0	2	58	1.13
2103673--2103740	24	2.9	24	97	2	129	39	0	2	57	1.14
2105217--2105258	16	2.5	17	80	7	50	28	4	0	66	1.12
2113221--2113639	54	7.7	55	82	5	460	39	12	20	27	1.89
2113204--2113634	108	4.0	108	88	0	558	39	12	20	27	1.88
2114007--2114061	22	2.5	22	88	8	85	36	12	14	36	1.84
2114767--2114909	76	1.9	74	88	5	216	23	19	20	36	1.95
2114843--2114956	45	2.5	45	85	2	147	27	21	19	31	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21