genome.fa.s9175.2.7.7.80.10.50.1000.44.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009175.1 Hibiscus syriacus cultivar Beakdansim tig00112738_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  10629029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   

This is table  44  of  51  ( 6037 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9083306--9083680	102	3.9	92	80	11	348	35	15	12	37	1.84
9083306--9083682	189	2.0	190	84	3	499	35	15	12	36	1.85
9091431--9091555	32	3.9	32	96	0	214	36	0	32	30	1.58
9092119--9092143	7	3.6	7	100	0	50	60	28	0	12	1.32
9099723--9100046	44	7.7	44	69	17	186	28	22	19	29	1.98
9099633--9100216	125	4.7	123	84	5	717	27	24	19	28	1.99
9099631--9100216	250	2.3	251	85	3	797	27	24	19	28	1.99
9100393--9100443	3	16.3	3	84	15	68	35	0	0	64	0.94
9101397--9101422	2	13.0	2	100	0	52	50	0	0	50	1.00
9101696--9101721	2	13.0	2	100	0	52	50	0	0	50	1.00
9104955--9105194	8	30.0	8	89	0	363	45	0	4	49	1.28
9104955--9105194	12	20.0	12	90	0	363	45	0	4	49	1.28
9104955--9105194	20	12.0	20	91	0	363	45	0	4	49	1.28
9106171--9106343	90	1.9	89	91	3	285	43	7	10	38	1.68
9112932--9113104	90	1.9	89	90	3	276	44	7	9	38	1.66
9117492--9117535	21	2.1	21	83	8	54	63	4	2	29	1.26
9117531--9118063	38	14.4	38	81	11	530	42	8	5	44	1.56
9117592--9118053	75	6.2	76	84	8	528	43	8	4	42	1.56
9117947--9117971	13	1.9	13	100	0	50	44	8	8	40	1.63
9130982--9131409	37	11.4	37	79	10	356	42	7	3	45	1.52
9135059--9135097	15	2.7	14	82	17	53	38	23	10	28	1.87
9141657--9141704	16	3.0	16	70	11	53	50	18	4	27	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9146348--9146383	16	2.2	16	100	0	72	16	30	13	38	1.88
9146640--9146686	14	3.7	14	71	26	50	44	0	4	51	1.21
9146639--9146688	23	2.1	24	96	3	93	48	0	4	48	1.20
9146913--9146978	18	3.7	18	100	0	132	42	15	4	37	1.67
9146913--9146986	36	2.1	36	92	5	123	40	14	4	40	1.65
9147192--9147232	19	2.1	20	90	4	66	24	31	0	43	1.54
9147350--9147389	2	20.0	2	100	0	80	50	0	0	50	1.00
9149720--9150023	83	3.7	80	74	9	229	30	13	21	34	1.92
9150402--9150449	22	2.2	22	84	0	60	43	12	8	35	1.73
9154365--9154441	24	3.0	26	84	11	104	40	3	20	35	1.71
9154589--9154623	18	1.9	18	94	0	61	42	2	11	42	1.55
9156711--9156755	17	2.6	17	100	0	90	17	8	4	68	1.32
9158279--9158329	21	2.3	23	83	13	79	47	19	33	0	1.50
9158285--9158331	21	2.2	21	100	0	94	44	21	34	0	1.52
9158830--9158950	43	2.8	41	78	5	116	35	25	17	21	1.95
9162502--9162558	3	18.0	3	89	3	69	40	0	0	59	0.97
9163750--9163784	12	2.9	12	100	0	70	31	0	8	60	1.27
9164057--9164115	2	29.5	2	96	0	109	50	0	0	49	1.00
9164128--9164386	141	1.8	140	82	8	337	38	7	7	45	1.61
9172804--9173054	75	3.4	74	81	3	254	31	17	21	30	1.96
9174216--9174292	22	3.5	22	75	3	75	36	14	12	36	1.84
9174943--9175520	45	12.8	45	94	1	985	23	23	19	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9174943--9175520	136	4.3	136	94	0	989	23	23	19	33	1.97
9174943--9175520	181	3.2	180	94	0	985	23	23	19	33	1.97
9175774--9175821	3	15.3	3	87	8	69	37	0	0	62	0.95
9175775--9175862	12	8.6	10	82	16	60	43	0	0	56	0.99
9175819--9175859	2	20.5	2	100	0	82	48	0	0	51	1.00
9176676--9176709	17	2.0	17	100	0	68	23	23	17	35	1.95
9177124--9177159	12	2.9	12	91	4	54	27	0	13	58	1.36
9177322--9177371	16	3.1	16	81	16	59	26	6	0	68	1.13
9177360--9177420	14	4.3	14	74	25	56	27	4	1	65	1.22
9177435--9177509	2	37.5	2	100	0	150	49	0	0	50	1.00
9178975--9179169	36	5.4	36	85	2	241	47	9	13	29	1.74
9178957--9179169	71	3.0	72	85	2	259	46	9	13	29	1.75
9179318--9179605	116	2.5	116	82	6	350	23	21	14	40	1.90
9181794--9181821	5	5.6	5	100	0	56	82	0	0	17	0.68
9183216--9183283	19	3.6	19	83	0	91	33	17	27	20	1.95
9183216--9183288	38	1.9	38	88	0	110	32	17	28	20	1.96
9184264--9184521	115	2.2	115	82	4	306	26	20	15	37	1.92
9193205--9193265	28	2.2	28	90	0	104	45	11	11	31	1.76
9199978--9200039	29	2.2	29	85	2	81	22	4	17	54	1.61
9200051--9200111	16	3.9	16	77	12	56	59	1	0	39	1.08
9203184--9203226	15	2.8	16	86	6	54	58	2	0	39	1.11
9204221--9204327	27	4.3	26	68	17	75	32	7	2	57	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9204271--9204327	24	2.4	24	79	8	62	31	5	1	61	1.28
9204354--9204395	18	2.3	18	88	8	59	38	4	0	57	1.20
9204395--9204443	18	2.7	18	83	3	62	42	0	12	44	1.41
9204648--9204681	16	2.1	16	88	0	50	70	0	0	29	0.87
9206479--9206515	2	19.0	2	94	5	67	51	0	0	48	1.00
9206476--9206515	21	1.9	21	100	0	80	52	0	0	47	1.00
9211035--9211064	14	2.1	14	100	0	60	43	0	0	56	0.99
9211888--9211915	3	9.3	3	100	0	56	35	0	0	64	0.94
9213882--9213940	21	2.9	20	80	9	66	55	3	0	40	1.16
9221553--9221604	24	2.2	24	86	6	70	9	5	40	44	1.61
9221550--9221602	19	2.9	18	77	5	54	9	5	39	45	1.60
9224815--9224868	18	3.1	17	89	7	74	9	9	0	81	0.88
9224833--9224922	27	3.2	26	72	17	74	10	12	1	76	1.07
9232204--9232319	9	12.1	10	87	7	50	58	0	0	41	0.98
9232233--9232316	3	28.0	3	95	4	152	65	0	0	34	0.93
9232722--9232754	3	11.3	3	93	6	59	63	0	0	36	0.95
9232724--9232752	14	2.1	14	100	0	58	65	0	0	34	0.93
9232722--9232754	17	1.9	17	100	0	66	63	0	0	36	0.95
9244025--9244074	20	2.5	20	80	6	57	56	8	0	36	1.29
9245945--9245984	19	2.1	19	95	0	71	57	10	2	30	1.45
9247137--9247333	30	6.7	29	73	8	128	56	8	12	22	1.63
9248837--9248877	3	13.7	3	90	10	66	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9249087--9249525	133	3.3	132	85	3	571	25	18	31	23	1.98
9249447--9249594	39	3.6	42	75	11	144	22	20	34	22	1.97
9249488--9249633	40	3.6	39	73	11	132	22	19	34	23	1.97
9249443--9249608	82	2.0	82	88	2	244	22	20	35	21	1.96
9249735--9250011	65	4.3	65	81	13	297	40	14	15	29	1.87
9250100--9250166	32	2.1	32	85	0	89	29	23	16	29	1.96
9251148--9251297	6	24.2	6	70	15	83	1	18	3	77	0.98
9251139--9251245	44	2.5	43	78	14	112	0	16	5	76	1.02
9251151--9251258	28	3.8	27	74	19	85	0	16	4	77	0.98
9251151--9251297	13	11.2	13	70	17	63	1	17	3	77	0.98
9251180--9251297	27	4.3	26	77	15	114	1	18	1	77	0.93
9251139--9251285	45	3.3	45	80	9	144	1	17	4	76	1.01
9251206--9251284	32	2.5	32	82	13	92	1	17	1	79	0.86
9251883--9251923	20	2.0	20	95	0	73	36	12	19	31	1.89
9252749--9253139	211	1.9	211	81	4	484	24	22	19	32	1.98
9255032--9255071	15	2.7	15	96	0	71	62	5	12	20	1.48
9255238--9255420	30	6.2	30	75	5	138	56	12	10	20	1.64
9256929--9257173	45	5.5	45	86	0	348	24	20	15	39	1.91
9256933--9257173	89	2.7	90	87	1	349	24	20	14	39	1.91
9260959--9260993	2	17.5	2	87	0	52	42	0	5	51	1.25
9260951--9260993	14	3.1	14	93	0	68	39	0	9	51	1.34
9260951--9260985	18	1.9	18	94	0	61	37	0	11	51	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9263640--9263777	23	6.1	23	79	4	138	36	26	20	16	1.93
9263773--9263835	21	3.1	19	76	21	56	42	20	9	26	1.83
9263819--9263858	21	1.9	21	90	10	64	40	15	15	30	1.87
9263765--9263862	42	2.3	42	77	6	108	39	21	11	27	1.87
9265091--9265186	23	4.1	24	84	6	117	30	26	22	20	1.99
9265363--9265395	15	2.2	15	94	0	57	57	12	0	30	1.35
9270015--9270047	2	17.0	2	93	6	59	48	0	0	51	1.00
9270504--9270603	23	4.3	23	80	1	101	31	22	23	24	1.99
9270838--9270878	22	1.9	21	85	5	55	65	4	0	29	1.13
9272350--9273185	225	3.7	223	86	4	1077	31	15	12	39	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51