genome.fa.s9175.2.7.7.80.10.50.1000.50.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009175.1 Hibiscus syriacus cultivar Beakdansim tig00112738_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  10629029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   

This is table  50  of  51  ( 6037 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10352855--10352888	14	2.4	14	90	0	50	17	47	23	11	1.81
10352863--10352914	17	3.2	16	76	12	54	17	42	23	17	1.89
10353630--10353654	13	1.9	13	100	0	50	32	0	24	44	1.54
10356165--10356217	24	2.2	24	82	0	61	30	16	24	28	1.97
10360339--10360372	17	2.0	17	94	0	59	38	14	11	35	1.83
10367232--10367266	18	1.9	18	88	0	52	34	20	20	25	1.96
10369389--10369430	22	2.0	21	86	13	59	66	4	14	14	1.40
10371884--10371964	32	2.5	32	91	0	126	18	35	19	25	1.95
10373047--10373264	108	2.0	106	93	3	375	22	19	19	38	1.93
10382065--10382101	18	2.0	19	89	5	58	37	2	2	56	1.28
10386108--10386149	22	2.0	21	86	13	61	38	9	9	42	1.70
10392463--10392548	40	2.2	40	85	2	111	30	27	20	20	1.98
10392696--10392737	22	2.0	21	86	13	61	38	9	9	42	1.70
10394130--10394223	20	4.7	20	81	2	116	32	23	27	15	1.95
10394136--10394223	41	2.2	40	85	2	113	34	23	27	14	1.94
10394400--10394457	30	2.0	29	90	10	91	44	17	5	32	1.70
10394400--10394459	29	2.0	30	93	6	104	43	16	6	33	1.74
10396139--10396232	20	4.7	20	76	2	98	32	22	26	18	1.97
10396410--10396467	30	2.0	29	90	10	91	44	17	5	32	1.70
10396410--10396468	29	2.0	30	93	6	102	44	16	5	33	1.70
10397741--10397810	34	2.1	32	84	5	86	22	32	14	30	1.94
10398144--10398236	20	4.7	20	97	0	168	33	20	29	17	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10398257--10398355	21	4.8	20	79	13	110	22	19	35	23	1.96
10398435--10398494	29	2.0	29	90	6	93	45	13	6	35	1.70
10413182--10413251	28	2.4	29	97	2	133	14	12	7	65	1.45
10413892--10413995	51	2.0	51	96	0	190	39	25	7	26	1.83
10416950--10417382	37	11.6	36	73	16	275	44	3	7	44	1.48
10417054--10417147	42	2.2	43	90	3	145	48	1	5	44	1.32
10416967--10417389	75	5.6	77	72	15	255	44	3	7	44	1.47
10417428--10417485	30	2.0	29	86	3	80	13	6	3	75	1.13
10418753--10418778	10	2.6	10	100	0	52	0	19	0	80	0.71
10418801--10418839	11	3.8	10	86	10	53	17	12	0	69	1.19
10418908--10418934	2	13.5	2	100	0	54	48	0	0	51	1.00
10424156--10425017	245	3.5	247	91	2	1365	30	24	20	25	1.99
10424133--10425017	84	10.7	83	81	6	940	30	24	20	25	1.98
10425791--10426137	36	9.3	36	76	15	289	46	2	6	43	1.45
10425787--10426130	38	9.2	36	78	14	271	46	2	6	43	1.45
10426135--10426189	18	2.9	21	79	17	66	27	1	0	70	0.97
10427583--10427642	24	2.6	23	82	10	77	20	1	0	78	0.84
10427583--10427641	4	15.8	4	73	19	56	20	1	0	77	0.85
10427601--10427647	10	4.6	10	91	2	67	19	2	0	78	0.85
10427583--10427653	24	3.0	23	75	19	65	19	4	0	76	0.96
10428315--10428340	2	13.0	2	100	0	52	50	0	50	0	1.00
10428515--10428542	2	14.0	2	100	0	56	50	0	50	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10428261--10428664	204	2.0	199	97	2	754	38	12	23	25	1.90
10430695--10430735	15	2.7	15	96	3	73	60	0	0	39	0.96
10437552--10437672	43	2.8	43	86	2	172	20	34	9	34	1.86
10439404--10439450	22	2.0	22	84	12	58	31	2	12	53	1.51
10444263--10444370	35	3.1	35	72	10	112	35	20	12	32	1.89
10444203--10444409	70	2.9	70	83	5	234	34	19	13	32	1.90
10444468--10444543	35	2.2	35	85	0	107	31	19	11	36	1.88
10454373--10454460	45	1.9	47	86	4	126	35	11	22	30	1.90
10459352--10459403	22	2.4	22	86	0	77	36	9	11	42	1.74
10460179--10460284	42	2.5	42	83	4	117	23	20	20	34	1.96
10460482--10460563	3	26.7	3	75	16	71	37	1	1	59	1.13
10460484--10460562	17	4.8	16	75	18	74	37	1	1	59	1.14
10460649--10460699	22	2.3	23	89	6	86	33	35	21	9	1.86
10460655--10460705	22	2.4	21	90	6	77	33	35	21	9	1.86
10465253--10465412	81	2.0	81	82	2	196	32	6	28	32	1.82
10468807--10468867	23	2.7	23	78	0	59	32	21	24	21	1.98
10469561--10469606	19	2.4	19	100	0	92	26	23	13	36	1.91
10473115--10473162	14	3.4	14	74	8	53	62	2	2	33	1.18
10474246--10475361	84	13.4	83	86	2	1198	24	18	22	34	1.96
10480907--10480954	14	3.4	14	74	8	53	62	2	2	33	1.18
10481886--10482334	85	5.3	84	80	5	354	28	17	19	34	1.94
10481886--10482666	83	9.4	85	78	9	524	25	18	21	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10481886--10482380	168	2.9	172	80	5	503	28	16	20	34	1.94
10482699--10483063	79	4.6	80	84	6	463	23	18	24	32	1.97
10486432--10486580	29	5.2	29	92	1	255	35	4	22	37	1.73
10489615--10489667	24	2.2	25	86	3	72	66	0	3	30	1.10
10496507--10496542	6	6.0	6	100	0	72	33	0	66	0	0.92
10496858--10496895	18	2.1	18	100	0	76	10	50	23	15	1.75
10499607--10499647	21	2.0	21	95	0	73	29	24	9	36	1.87
10499641--10499793	21	7.5	21	83	9	158	39	24	15	21	1.91
10499951--10499988	16	2.5	15	84	12	51	28	5	0	65	1.14
10500541--10500574	12	2.8	12	90	0	50	55	29	0	14	1.40
10500694--10500754	24	2.5	24	75	0	68	27	18	14	39	1.90
10503019--10503059	18	2.3	18	86	0	55	53	24	2	19	1.57
10503340--10503382	20	2.2	20	91	0	68	44	27	16	11	1.82
10503423--10503460	20	1.9	20	94	0	67	15	18	23	42	1.89
10503569--10503622	28	1.9	28	84	0	72	48	20	0	31	1.50
10503586--10503622	14	2.6	14	100	0	74	48	21	0	29	1.50
10505022--10505115	41	2.3	41	81	5	100	19	20	39	21	1.93
10505045--10505142	21	4.7	22	76	11	80	21	18	34	25	1.96
10505045--10505142	42	2.4	41	77	5	99	21	18	34	25	1.96
10507192--10507265	20	3.8	20	78	1	78	47	18	14	18	1.83
10507750--10507896	20	7.3	20	71	16	117	21	14	23	41	1.89
10507759--10507896	40	3.5	40	84	7	190	20	14	23	41	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10507749--10507935	80	2.3	80	84	4	241	21	13	25	39	1.91
10508080--10508146	32	2.1	31	83	10	82	46	7	2	43	1.47
10510179--10510215	15	2.6	14	91	8	58	37	0	0	62	0.96
10510725--10510768	13	3.2	13	82	17	54	75	0	9	15	1.05
10510718--10510779	22	2.7	23	73	9	65	74	0	9	16	1.07
10510761--10510832	5	14.8	5	72	13	53	72	0	4	23	1.02
10510762--10510856	48	2.0	48	89	4	147	68	1	6	24	1.19
10512005--10512076	36	2.0	37	94	2	128	16	30	31	20	1.95
10512473--10512577	46	2.3	46	91	1	167	43	6	16	33	1.74
10512726--10512821	38	2.5	38	89	0	147	27	23	26	22	2.00
10514798--10514842	2	22.5	2	100	0	90	51	0	0	48	1.00
10518131--10518202	36	2.0	36	97	0	135	16	31	30	20	1.95
10518612--10518684	22	3.2	21	67	14	56	41	6	19	32	1.78
10518622--10518696	23	3.3	22	70	15	71	40	8	20	32	1.81
10518604--10518708	46	2.3	46	95	1	185	42	6	18	32	1.76
10518857--10518952	38	2.5	38	87	0	138	27	22	26	23	2.00
10520480--10520566	2	49.0	2	70	22	61	56	2	1	40	1.19
10520480--10520566	7	12.6	7	75	18	76	56	2	1	40	1.19
10520504--10520561	23	2.6	23	83	8	75	55	3	1	39	1.27
10520480--10520566	16	5.6	16	80	11	92	56	2	1	40	1.19
10520594--10520620	13	2.1	13	100	0	54	40	7	7	44	1.60
10520656--10520714	25	2.4	24	77	5	64	45	11	3	38	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10520674--10520725	25	2.0	27	82	17	65	50	11	0	38	1.39
10522757--10522794	19	2.1	19	90	5	60	47	2	10	39	1.52
10527281--10527356	23	3.3	23	92	0	116	31	10	22	35	1.88
10531728--10531766	20	2.0	20	89	0	60	30	30	17	20	1.96
10531740--10531779	20	2.0	20	85	0	53	30	25	17	27	1.97
10547358--10547393	18	2.0	18	88	0	54	30	8	16	44	1.77
10550778--10550835	13	4.5	13	86	0	89	17	43	22	17	1.88
10550808--10550883	8	9.6	8	81	18	81	15	36	23	23	1.94
10550825--10550863	7	5.3	7	90	9	60	12	35	25	25	1.92
10550825--10550864	15	2.7	15	100	0	80	12	37	25	25	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51