genome.fa.s9175.2.7.7.80.10.50.1000.38.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009175.1 Hibiscus syriacus cultivar Beakdansim tig00112738_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  10629029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   

This is table  38  of  51  ( 6037 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7753578--7753641	33	1.9	33	84	6	85	18	43	18	18	1.88
7754242--7754287	21	2.2	21	92	0	74	15	10	36	36	1.82
7761443--7761477	18	2.0	17	94	5	61	74	0	8	17	1.06
7766348--7766378	2	15.5	2	100	0	62	48	0	0	51	1.00
7775462--7776556	38	28.3	38	82	5	1255	25	18	15	40	1.90
7775431--7776850	194	7.4	194	79	6	1449	25	17	16	40	1.90
7775467--7776556	156	7.0	152	82	5	1213	25	18	15	40	1.90
7776632--7776850	38	5.6	38	75	10	165	26	18	15	39	1.91
7776634--7776850	117	1.8	118	88	2	330	26	17	16	39	1.91
7776796--7777183	45	8.7	45	77	7	317	23	16	19	40	1.90
7776796--7777173	90	4.2	90	79	6	367	24	16	19	40	1.91
7776917--7777213	45	6.5	45	77	9	133	23	17	19	39	1.92
7782394--7782439	23	2.0	23	87	8	67	52	0	2	45	1.13
7782446--7782513	25	2.6	27	80	11	72	58	1	1	38	1.16
7782515--7782552	18	2.1	19	85	14	53	36	0	2	60	1.11
7782527--7782569	22	1.9	23	85	4	61	39	0	2	58	1.11
7787458--7787528	35	2.0	35	97	0	133	30	16	9	42	1.81
7789331--7789390	28	2.1	28	96	0	111	41	11	10	36	1.75
7789565--7789639	27	2.8	27	93	0	123	29	25	10	34	1.90
7789741--7789846	36	2.9	36	88	2	169	46	16	7	30	1.74
7790275--7790309	17	2.1	17	88	0	52	48	22	20	8	1.76
7792503--7792532	15	2.0	15	100	0	60	66	0	26	6	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7797996--7798024	2	14.5	2	100	0	58	51	0	0	48	1.00
7799421--7799565	37	3.9	37	78	6	141	33	17	13	35	1.89
7799612--7800248	197	3.3	188	84	6	755	25	17	14	42	1.87
7799610--7800255	66	10.0	64	82	8	708	26	17	14	41	1.87
7799944--7800126	36	5.4	36	66	19	117	27	19	13	39	1.89
7803903--7803931	4	7.2	4	100	0	58	24	0	0	75	0.80
7804141--7804202	26	2.3	28	78	15	69	24	1	8	66	1.28
7808533--7808609	9	9.6	8	80	17	54	79	3	14	2	0.99
7808533--7808619	16	5.7	15	75	14	65	79	4	13	2	0.99
7808533--7808619	38	2.3	39	80	9	108	79	4	13	2	0.99
7809696--7809731	18	2.0	18	88	0	54	19	8	30	41	1.81
7810331--7810410	37	2.2	37	84	4	99	26	16	13	43	1.85
7810356--7810427	37	1.9	37	82	0	90	26	19	12	41	1.87
7811043--7811466	106	4.0	106	91	0	659	34	23	19	22	1.96
7812174--7812213	2	21.0	2	90	10	66	47	0	0	52	1.00
7812161--7812212	20	2.5	21	81	9	61	48	1	0	50	1.12
7813059--7813085	12	2.2	12	100	0	54	33	0	0	66	0.92
7813734--7814102	131	2.8	131	79	5	390	27	28	18	26	1.98
7814309--7814360	3	17.3	3	100	0	104	32	0	0	67	0.91
7819795--7819832	2	18.5	2	94	5	67	47	2	0	50	1.15
7822810--7822991	42	4.3	41	81	6	186	28	18	18	34	1.94
7822810--7822991	84	2.2	84	83	4	231	28	18	18	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7823167--7823208	13	3.2	13	76	10	50	40	0	2	57	1.12
7823158--7823216	18	3.7	16	78	21	70	42	0	5	52	1.23
7823160--7823210	5	10.0	5	79	12	50	41	0	3	54	1.19
7823158--7823216	25	2.5	24	77	22	70	42	0	5	52	1.23
7836153--7836187	18	1.9	18	88	0	52	37	5	5	51	1.50
7836161--7836286	18	6.8	18	65	12	58	40	5	9	44	1.60
7836309--7836349	15	2.5	17	76	19	50	34	4	2	58	1.32
7837519--7837548	13	2.3	13	100	0	60	16	0	0	83	0.65
7846618--7846664	20	2.3	20	76	20	53	42	10	21	25	1.85
7851709--7851784	31	2.5	29	79	10	80	39	1	17	42	1.57
7851939--7851989	20	2.5	20	100	0	102	43	5	17	33	1.73
7853964--7854010	20	2.3	20	100	0	94	36	0	17	46	1.48
7854143--7854254	48	2.3	48	84	3	136	20	16	27	34	1.95
7854372--7854469	30	3.3	30	85	0	133	51	6	18	24	1.69
7855265--7855303	20	2.0	20	85	10	53	38	30	12	17	1.88
7856528--7856565	15	2.5	15	86	4	58	57	5	34	2	1.35
7858503--7858527	13	1.9	13	100	0	50	32	16	16	36	1.90
7860341--7860388	20	2.4	20	93	6	80	41	12	2	43	1.54
7861297--7861497	83	2.4	83	96	0	366	29	10	16	43	1.82
7863017--7863062	2	23.0	2	100	0	92	50	0	0	50	1.00
7871409--7871450	12	3.6	12	96	3	77	78	7	14	0	0.95
7871399--7871469	23	3.3	21	86	9	99	77	11	11	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7871399--7871469	11	6.6	11	86	13	87	77	11	11	0	1.00
7871399--7871476	21	3.7	21	77	1	75	75	12	11	0	1.04
7883974--7884057	29	2.8	30	78	7	98	41	21	11	25	1.87
7885910--7885954	22	2.0	22	83	8	56	24	2	0	73	0.95
7889110--7889160	20	2.6	20	87	3	68	35	7	15	41	1.76
7892165--7892205	20	2.0	21	85	4	57	41	9	12	36	1.76
7892341--7892390	20	2.5	20	80	6	66	46	14	2	38	1.56
7894202--7894248	20	2.4	19	82	10	58	40	10	17	31	1.83
7894371--7894698	170	2.0	165	88	9	488	43	10	7	37	1.69
7901560--7901799	120	2.0	119	97	0	453	42	12	20	24	1.87
7905478--7905532	16	3.6	16	72	18	55	47	18	12	21	1.82
7908695--7908806	2	57.0	2	87	7	167	50	0	1	46	1.17
7908685--7908731	24	2.0	24	87	8	69	51	2	8	38	1.45
7909855--7909942	2	45.0	2	80	13	103	52	0	2	45	1.13
7912061--7912114	7	7.7	7	78	13	58	0	12	3	83	0.78
7912153--7912192	16	2.6	15	85	14	55	0	12	2	85	0.71
7922638--7922715	33	2.4	32	79	12	86	73	2	8	15	1.19
7922831--7922902	25	2.9	25	71	19	62	61	1	5	31	1.28
7928390--7928429	15	2.7	15	80	0	53	17	20	17	45	1.86
7929800--7929930	30	4.4	30	86	1	174	15	27	19	38	1.91
7936567--7936728	30	5.4	30	81	2	155	15	25	18	40	1.90
7936592--7936741	60	2.5	60	78	0	183	14	26	20	39	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7936592--7936734	30	4.8	30	83	0	160	13	27	20	38	1.91
7936554--7936734	30	6.0	30	81	2	121	16	25	18	40	1.90
7937971--7938018	2	25.0	2	84	16	66	47	2	0	50	1.12
7939241--7939265	13	1.9	13	100	0	50	20	0	0	80	0.72
7939284--7939310	10	2.7	10	100	0	54	18	18	7	55	1.65
7943769--7944566	288	2.8	286	86	2	1057	46	6	14	32	1.70
7945038--7945122	44	2.0	43	81	11	102	40	1	7	51	1.37
7949442--7949494	28	1.9	27	88	3	79	26	22	7	43	1.80
7950433--7950469	19	1.9	19	88	0	56	67	8	8	16	1.40
7952644--7952953	169	1.8	169	85	0	431	40	13	11	33	1.81
7956568--7956606	17	2.3	17	100	0	78	12	23	46	17	1.83
7956602--7956677	10	8.0	9	77	8	62	27	28	26	17	1.97
7956611--7956652	19	2.2	19	91	8	68	23	26	28	21	1.99
7967026--7967071	16	2.7	18	81	18	55	63	0	0	36	0.95
7967030--7967068	13	3.0	13	80	0	51	61	0	0	38	0.96
7967240--7968345	265	4.2	268	83	3	1247	30	16	21	32	1.95
7967230--7968347	134	8.4	134	83	3	1242	30	16	21	31	1.95
7968638--7969092	192	2.4	190	84	4	581	32	17	15	34	1.92
7969054--7969155	40	2.5	41	84	7	120	29	21	19	29	1.98
7969064--7969155	41	2.2	40	84	7	114	31	18	20	29	1.96
7974523--7974756	130	1.8	130	87	3	355	41	16	9	32	1.80
7976985--7977175	97	2.0	97	100	0	382	38	15	22	23	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7979839--7979873	15	2.4	15	90	4	54	60	25	5	8	1.49
7980532--7980566	15	2.4	15	90	4	54	60	25	5	8	1.49
7979349--7980738	693	2.0	694	99	0	2737	35	18	19	25	1.95
7980748--7980774	12	2.2	12	100	0	54	37	29	0	33	1.58
7980797--7980836	21	1.9	21	84	0	53	35	15	12	37	1.85
7994479--7994529	23	2.2	23	78	0	57	23	25	25	25	2.00
8008425--8008477	24	2.2	25	82	6	72	39	24	11	24	1.88
8008432--8008479	24	2.0	24	95	0	87	35	29	10	25	1.89
8012903--8012955	24	2.2	25	86	6	81	37	26	11	24	1.89
8014727--8015085	42	8.7	42	77	4	280	33	18	18	29	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51