genome.fa.s9175.2.7.7.80.10.50.1000.51.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009175.1 Hibiscus syriacus cultivar Beakdansim tig00112738_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  10629029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   

This is table  51  of  51  ( 6037 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10552158--10552193	18	2.0	18	88	0	54	52	0	16	30	1.44
10552271--10552323	26	2.0	26	85	0	70	37	16	20	24	1.93
10553277--10553359	23	3.6	23	83	8	96	25	15	20	38	1.92
10553292--10553366	24	3.2	24	90	1	116	26	16	21	36	1.94
10555133--10555157	13	1.9	13	100	0	50	0	12	0	88	0.53
10559414--10559456	20	2.2	20	86	0	59	34	20	13	30	1.92
10571655--10571708	20	2.7	19	86	8	72	31	16	29	22	1.96
10572505--10572758	68	3.7	68	89	2	366	30	14	23	31	1.94
10572706--10573101	162	2.5	156	85	5	514	35	9	23	31	1.88
10572818--10573101	81	3.5	81	88	0	408	34	8	23	32	1.86
10577651--10577802	55	2.8	55	79	3	164	33	13	19	33	1.90
10578018--10578268	68	3.7	68	86	2	351	30	14	25	29	1.95
10578018--10578268	136	1.8	136	88	1	387	30	14	25	29	1.95
10578220--10578378	81	2.0	81	92	0	264	37	11	23	27	1.90
10579170--10579261	43	2.1	43	93	0	157	38	35	8	17	1.81
10579366--10579494	24	5.4	24	82	3	125	41	18	12	27	1.86
10579381--10579516	72	1.9	72	81	6	168	42	17	13	26	1.86
10581906--10581930	13	1.9	13	100	0	50	20	16	48	16	1.82
10582786--10582860	2	37.5	2	100	0	150	49	0	0	50	1.00
10584113--10584203	43	2.1	43	93	0	155	37	37	9	15	1.81
10584323--10584437	24	4.8	24	84	4	151	40	20	13	26	1.89
10584324--10584459	72	1.9	72	84	6	186	41	18	13	26	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10585156--10585356	92	2.3	88	83	10	257	37	19	10	32	1.86
10585850--10586125	41	6.7	41	85	2	270	33	22	11	32	1.89
10592128--10592704	292	2.0	292	96	0	1075	39	10	13	36	1.79
10594346--10594399	23	2.3	23	90	6	83	29	22	29	18	1.97
10595421--10595465	21	2.1	22	87	4	65	26	15	6	51	1.68
10595935--10595972	20	1.9	20	88	0	58	26	18	18	36	1.94
10595980--10596138	64	2.5	62	79	8	178	25	23	18	32	1.97
10600936--10601079	64	2.2	65	82	6	177	25	22	18	33	1.97
10601020--10601118	45	2.2	45	100	0	198	22	18	20	39	1.92
10606707--10606752	22	2.1	22	100	0	92	26	17	13	43	1.85
10624834--10624903	13	5.0	13	82	16	63	78	1	12	7	1.01
10624835--10624897	6	9.0	7	70	19	51	79	1	14	4	0.97
10626044--10626519	48	10.3	48	79	8	508	27	21	17	32	1.96
10626042--10626494	95	5.0	91	88	7	593	28	22	18	31	1.97
10628268--10628296	13	2.1	14	93	6	51	34	3	6	55	1.44

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51

The End!