genome.fa.s9175.2.7.7.80.10.50.1000.36.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009175.1 Hibiscus syriacus cultivar Beakdansim tig00112738_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  10629029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   

This is table  36  of  51  ( 6037 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7347443--7347621	87	2.1	86	85	3	243	30	17	17	34	1.93
7347227--7347822	313	1.9	313	91	0	969	29	18	14	37	1.91
7348665--7349222	83	6.7	83	95	0	990	36	24	12	26	1.91
7354466--7354497	15	2.1	15	94	0	55	46	9	18	25	1.79
7357254--7357278	9	2.8	9	100	0	50	52	0	0	48	1.00
7357748--7357833	29	3.1	27	74	8	75	61	1	3	33	1.20
7359886--7359960	3	25.0	3	88	0	114	61	0	0	38	0.96
7359877--7359953	24	3.2	25	89	7	124	58	0	0	41	0.98
7360293--7360348	17	3.2	17	69	18	51	19	21	8	50	1.75
7360276--7361031	200	3.5	221	79	12	756	29	18	14	37	1.91
7360275--7360743	113	4.2	110	86	5	631	30	18	14	37	1.91
7360652--7360830	87	2.1	86	85	3	243	30	17	17	34	1.93
7360436--7361031	313	1.9	313	91	0	969	29	18	14	37	1.91
7360739--7360996	113	2.3	113	87	0	363	26	20	14	39	1.90
7360782--7361030	113	2.2	113	83	0	327	29	18	15	36	1.91
7362694--7362775	9	8.2	11	73	23	58	56	0	0	43	0.99
7362706--7362777	3	24.0	3	88	0	99	59	0	0	40	0.97
7362697--7362776	24	3.2	25	86	10	119	57	0	0	42	0.98
7363110--7363848	200	3.4	219	77	14	715	29	17	14	38	1.90
7363092--7363560	113	4.2	110	85	4	604	30	17	14	37	1.90
7363469--7363647	87	2.1	86	85	3	243	30	17	17	34	1.93
7363253--7363848	313	1.9	313	90	0	960	29	17	14	37	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7363556--7363813	113	2.3	113	86	0	354	26	19	14	39	1.90
7363599--7363847	113	2.2	113	83	0	318	29	18	15	36	1.91
7365523--7365591	3	23.0	3	90	0	111	62	0	0	37	0.96
7371586--7371611	13	2.0	13	100	0	52	84	0	0	15	0.62
7371556--7371628	6	12.3	6	70	8	51	76	2	4	16	1.05
7371598--7371633	18	1.9	19	94	5	65	66	0	5	27	1.13
7374216--7374261	23	2.0	23	84	12	60	6	19	2	71	1.18
7374243--7374279	12	2.7	15	84	16	53	5	27	0	67	1.12
7379337--7379392	21	2.7	21	80	0	76	21	0	53	25	1.46
7381283--7381334	24	2.2	24	82	6	61	38	5	30	25	1.79
7387571--7387605	18	1.9	19	88	11	56	45	8	2	42	1.49
7387570--7387609	18	2.2	17	82	8	53	50	7	2	40	1.44
7388709--7388792	44	1.9	44	95	0	150	30	17	19	32	1.95
7389518--7389572	21	2.6	21	88	0	83	20	23	20	36	1.95
7389560--7389625	20	3.3	20	95	0	114	27	25	19	27	1.99
7392760--7392790	12	2.6	12	94	0	53	48	29	6	16	1.70
7392961--7393165	20	10.9	20	78	12	200	34	21	18	25	1.96
7392969--7393035	34	2.0	34	96	0	125	37	23	16	22	1.94
7392961--7393209	54	4.5	54	81	7	268	35	21	18	24	1.95
7393003--7393209	114	1.8	113	87	3	308	35	22	18	23	1.96
7393214--7393261	20	2.4	20	77	19	55	12	14	31	41	1.83
7393360--7393420	14	4.3	14	82	2	77	45	16	0	37	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7394825--7394927	21	4.9	22	74	11	65	23	19	35	21	1.96
7394839--7394931	42	2.2	42	80	3	107	23	17	38	20	1.93
7395417--7395463	20	2.5	19	82	6	60	34	25	19	21	1.96
7395681--7395730	18	2.8	18	100	0	100	42	6	20	32	1.76
7397461--7397528	20	3.5	20	81	2	84	50	22	14	13	1.77
7397913--7397965	22	2.4	22	83	0	70	16	16	41	24	1.89
7398130--7398243	20	5.7	20	88	0	156	28	20	24	27	1.99
7398232--7398282	20	2.5	20	93	0	93	25	21	15	37	1.93
7398272--7398324	21	2.5	21	78	0	61	35	18	22	22	1.95
7408825--7408904	31	2.6	31	89	0	133	45	8	10	36	1.69
7408890--7408950	27	2.3	27	94	0	104	40	16	3	39	1.65
7409532--7409658	44	3.2	43	65	28	116	25	1	13	59	1.44
7409531--7409746	76	2.8	75	86	7	285	30	0	12	56	1.42
7410332--7410366	11	3.1	11	88	8	52	22	0	2	74	0.95
7416261--7416335	24	3.1	24	88	0	114	40	16	17	26	1.90
7416268--7416343	24	3.2	24	83	3	100	38	17	17	27	1.91
7420945--7421029	24	3.5	24	80	0	89	42	16	12	28	1.85
7420959--7421030	24	3.0	24	81	0	99	38	18	15	27	1.90
7425989--7426232	82	3.0	82	89	4	356	31	2	11	55	1.46
7425993--7426120	38	3.2	38	71	16	132	30	3	11	54	1.52
7427159--7427201	14	2.9	15	83	10	52	69	2	6	20	1.23
7432658--7432756	29	3.4	29	98	0	189	21	21	29	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7433307--7433340	16	2.1	16	88	0	50	50	0	2	47	1.16
7433382--7433415	16	2.0	18	88	11	54	26	2	5	64	1.30
7433911--7433957	23	2.1	23	84	7	62	34	14	14	36	1.88
7433884--7434131	130	1.9	130	90	0	397	35	12	15	36	1.85
7434528--7434604	35	2.2	35	90	0	118	36	1	24	37	1.64
7451143--7451187	2	22.5	2	100	0	90	51	0	0	48	1.00
7451210--7451251	21	2.0	21	85	0	57	42	7	2	47	1.43
7452694--7452718	12	2.1	12	100	0	50	92	0	8	0	0.40
7453252--7453291	21	1.9	21	85	10	55	32	2	45	20	1.64
7454295--7454425	37	3.6	35	81	8	156	48	3	5	42	1.44
7454369--7454445	39	2.1	37	85	7	102	48	5	5	41	1.48
7454444--7454484	15	2.8	16	82	14	52	36	0	4	58	1.20
7454445--7454527	21	4.0	20	74	20	71	28	0	2	68	1.02
7454459--7454526	14	4.9	14	77	12	61	26	0	1	72	0.94
7455265--7455316	24	2.3	24	81	12	67	23	7	0	69	1.14
7462823--7462857	18	1.9	18	88	0	52	80	2	5	11	1.00
7464185--7464229	23	2.0	23	90	0	72	24	17	11	46	1.81
7469342--7469371	7	4.4	7	95	4	53	0	10	30	60	1.30
7473729--7473807	35	2.3	35	77	4	88	40	0	18	40	1.51
7474066--7474091	4	6.5	4	100	0	52	23	0	0	76	0.78
7479804--7479854	2	25.5	2	100	0	102	49	0	0	50	1.00
7480676--7480708	3	11.0	3	100	0	66	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7484794--7484979	60	3.1	60	79	9	200	38	4	24	32	1.76
7494027--7494085	27	2.2	27	81	6	66	49	3	5	42	1.41
7494252--7494282	13	2.4	13	94	0	53	35	0	22	41	1.54
7494614--7494714	34	3.1	34	68	25	101	19	5	18	55	1.63
7494595--7494714	62	1.9	62	91	0	195	18	9	18	54	1.69
7496493--7496524	16	1.9	17	93	6	57	46	3	0	50	1.17
7500499--7500550	9	5.8	9	82	15	63	69	0	1	28	0.99
7500494--7500550	16	3.4	16	75	15	53	70	0	1	28	0.98
7512788--7513042	87	2.9	87	87	1	341	34	3	8	52	1.51
7512759--7513069	29	10.8	29	81	4	306	35	4	8	51	1.54
7523418--7523561	6	21.8	6	73	19	53	75	0	13	10	1.08
7523419--7523561	26	5.4	26	71	18	91	75	0	13	10	1.08
7523430--7523537	17	6.2	16	73	21	58	75	0	12	10	1.08
7523505--7523546	12	3.5	12	84	12	59	80	0	11	7	0.88
7523419--7523562	24	5.8	24	71	23	86	75	0	13	10	1.08
7524883--7524980	37	2.7	37	87	1	126	39	18	19	22	1.92
7525011--7525209	55	3.6	55	84	1	274	33	14	23	29	1.94
7525011--7525312	110	2.7	111	85	4	353	32	14	20	32	1.93
7525005--7525378	55	6.8	55	77	3	270	31	15	20	32	1.94
7525275--7525393	55	2.2	55	81	6	134	28	18	20	32	1.96
7525989--7526017	15	2.0	15	93	6	51	13	0	10	75	1.04
7527038--7527096	21	2.9	21	80	14	61	44	0	5	50	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7530289--7530348	13	4.6	13	87	0	75	30	20	15	35	1.93
7530333--7530493	85	1.9	86	81	3	200	33	16	18	31	1.93
7530514--7530550	2	18.5	2	100	0	74	48	0	0	51	1.00
7530597--7530630	2	17.0	2	100	0	68	50	0	0	50	1.00
7530517--7530702	80	2.3	80	99	0	363	46	8	4	40	1.53
7535364--7535395	16	2.0	16	93	0	55	62	0	34	3	1.11
7536158--7536202	6	7.8	6	92	7	60	71	2	0	26	0.98
7537301--7537362	12	4.9	13	76	18	60	54	3	0	41	1.16
7537301--7537334	3	11.7	3	87	6	52	61	2	0	35	1.11
7537642--7537723	42	2.0	42	97	0	155	36	21	20	20	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51