genome.fa.s9175.2.7.7.80.10.50.1000.49.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009175.1 Hibiscus syriacus cultivar Beakdansim tig00112738_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  10629029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   

This is table  49  of  51  ( 6037 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10223532--10223622	3	29.7	3	80	4	83	56	0	2	41	1.12
10223538--10223579	19	2.2	19	95	0	75	54	0	4	40	1.21
10226750--10226905	39	4.0	39	81	3	152	32	23	26	17	1.97
10232534--10232620	36	2.3	37	82	7	113	34	21	26	17	1.95
10234386--10234544	80	2.0	81	88	3	241	33	14	35	16	1.89
10249039--10249182	45	3.2	44	91	3	216	41	13	20	23	1.88
10254463--10254776	45	7.0	45	86	3	338	42	14	19	24	1.88
10254451--10254776	90	3.6	88	88	3	404	42	13	19	24	1.87
10254450--10254778	135	2.5	133	86	5	448	42	13	19	24	1.87
10256427--10256757	46	7.4	46	86	7	457	44	9	25	20	1.82
10256432--10256798	176	2.1	174	88	4	544	43	9	25	20	1.82
10256695--10256810	61	1.9	61	96	0	214	47	9	23	19	1.79
10256741--10256772	15	2.1	15	94	0	55	53	6	21	18	1.67
10256951--10257100	54	2.8	56	79	10	175	36	10	16	37	1.82
10257267--10257471	81	2.5	81	84	1	277	36	12	22	27	1.91
10263742--10264321	159	3.6	159	84	4	708	29	23	11	35	1.90
10263735--10264321	79	7.4	81	82	4	662	29	23	12	34	1.91
10264271--10264346	22	3.4	22	71	10	73	31	17	10	40	1.83
10264273--10264366	45	2.1	45	92	4	154	28	19	9	42	1.82
10264805--10264961	73	2.1	72	84	2	188	29	22	13	35	1.92
10264377--10268415	688	5.8	704	81	13	4625	31	21	10	36	1.88
10265570--10265703	58	2.3	59	87	6	191	22	27	11	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10266242--10266293	20	2.6	20	96	0	95	23	21	11	44	1.84
10266174--10266388	115	1.9	115	90	0	340	25	24	13	37	1.92
10266264--10266471	92	2.2	92	84	7	253	24	23	13	38	1.91
10265629--10268415	720	3.9	703	80	14	3245	31	21	10	36	1.88
10267592--10267837	95	2.6	94	90	1	366	25	24	12	37	1.91
10268384--10268435	20	2.6	20	96	0	95	23	21	11	44	1.84
10268406--10268623	95	2.3	94	82	3	278	23	23	13	39	1.90
10268316--10268540	115	2.0	115	90	0	351	24	24	12	38	1.90
10266988--10269158	740	3.0	745	89	6	3304	31	21	10	36	1.88
10268550--10269634	529	2.1	521	90	5	1720	33	21	9	35	1.86
10269606--10269862	95	2.7	93	86	3	336	24	24	12	37	1.90
10269823--10271011	606	2.0	610	93	3	2058	32	21	10	35	1.87
10270980--10271031	20	2.6	20	93	0	86	25	19	11	44	1.84
10270912--10271119	115	1.8	115	91	0	344	25	23	13	37	1.91
10271002--10271217	95	2.3	92	84	4	290	24	23	13	38	1.91
10271647--10271802	74	2.1	73	85	3	206	28	22	14	34	1.93
10271718--10271915	93	2.1	94	84	4	249	25	23	13	37	1.91
10272358--10272650	95	3.1	95	81	7	346	25	23	12	38	1.90
10273144--10273192	18	2.6	19	84	12	66	22	22	12	42	1.86
10273077--10273291	112	1.9	112	86	3	308	25	24	13	37	1.92
10273164--10273379	95	2.3	92	84	4	281	24	24	13	37	1.91
10273893--10273964	21	3.7	20	80	15	71	23	23	12	40	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10273893--10273963	18	3.7	18	80	17	72	23	22	12	40	1.88
10273821--10274061	93	2.6	91	88	5	322	24	24	13	38	1.91
10273954--10274212	122	2.1	124	88	7	393	24	25	14	35	1.93
10274672--10274917	95	2.6	96	88	5	349	25	23	12	38	1.90
10274902--10274986	34	2.6	34	81	3	111	23	25	16	34	1.95
10274807--10275073	128	2.1	128	97	0	498	24	25	14	35	1.93
10275529--10275774	95	2.6	95	89	3	361	26	24	11	37	1.90
10274935--10283306	753	11.2	734	87	6	11664	30	21	10	36	1.88
10276335--10276385	19	2.6	20	90	6	86	21	21	11	45	1.84
10276274--10276480	114	1.8	115	88	1	317	25	24	13	36	1.92
10276356--10276573	95	2.3	94	84	3	296	24	23	13	38	1.91
10277088--10277139	20	2.6	20	90	0	86	25	19	11	44	1.84
10277020--10277233	115	1.9	115	89	0	338	26	23	13	36	1.91
10277110--10277327	95	2.3	94	85	2	285	24	23	13	37	1.92
10277769--10278055	95	3.0	95	87	3	384	25	24	13	36	1.92
10278575--10278626	20	2.6	20	93	0	86	25	21	11	42	1.86
10278507--10278731	115	2.0	115	86	1	317	25	24	12	38	1.90
10278597--10278814	95	2.3	94	81	3	269	24	22	14	38	1.91
10279325--10279376	20	2.6	20	96	0	95	23	21	11	44	1.84
10279257--10279481	115	2.0	115	87	1	326	24	24	12	38	1.90
10279347--10279564	95	2.3	94	81	3	269	24	22	14	38	1.91
10280007--10280167	75	2.1	75	87	0	232	28	22	13	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10280079--10280265	95	2.0	94	84	5	243	26	24	12	36	1.91
10280720--10281011	95	3.1	95	85	3	385	24	24	13	37	1.91
10281446--10281691	95	2.6	95	87	3	336	25	23	13	37	1.91
10281581--10281847	128	2.1	128	94	1	473	24	24	14	36	1.93
10282308--10282598	94	3.1	95	85	3	374	24	24	13	37	1.91
10283037--10283278	95	2.5	95	87	4	328	25	23	13	37	1.91
10283168--10283434	128	2.1	128	92	1	455	24	25	14	35	1.93
10282442--10290267	862	9.0	862	83	7	9983	29	22	11	36	1.90
10283895--10284141	95	2.6	95	88	3	363	25	24	11	38	1.88
10284126--10284210	34	2.6	34	77	3	93	23	24	16	35	1.95
10284030--10284297	128	2.1	129	92	0	439	24	23	14	36	1.93
10284758--10285003	95	2.6	95	88	1	341	25	24	13	37	1.91
10284893--10285159	128	2.1	128	93	1	464	23	24	15	36	1.94
10285621--10285864	95	2.6	95	86	1	328	25	25	11	37	1.90
10285753--10286020	128	2.1	128	91	1	439	23	24	14	36	1.93
10286553--10286606	20	2.6	21	82	14	67	27	18	12	40	1.87
10286481--10286726	95	2.6	95	88	1	341	24	24	12	37	1.90
10286711--10286795	33	2.6	34	79	3	102	23	24	16	35	1.95
10286616--10286882	128	2.1	128	95	1	482	23	25	14	36	1.93
10286711--10286788	34	2.3	33	84	2	93	25	23	17	33	1.96
10287342--10287633	95	3.1	95	85	3	385	25	24	13	37	1.91
10286744--10288326	733	2.2	711	94	2	2747	30	21	11	36	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10288097--10288252	73	2.1	73	85	2	215	25	26	13	35	1.93
10288283--10288367	34	2.6	34	81	3	111	23	25	16	34	1.95
10288188--10288454	128	2.1	128	97	0	498	24	25	14	35	1.93
10289125--10289369	95	2.6	95	88	1	357	25	24	13	36	1.92
10289263--10289525	128	2.1	128	94	1	456	24	23	15	36	1.93
10289999--10290285	95	3.0	95	83	4	359	24	24	13	37	1.91
10289387--10291639	741	3.1	738	90	4	3491	31	21	10	36	1.88
10290727--10290885	75	2.1	75	89	0	237	27	22	13	35	1.92
10290799--10290992	95	2.1	94	89	2	291	24	24	13	37	1.92
10290086--10291523	714	2.0	713	93	1	2434	31	21	10	36	1.88
10291440--10291639	95	2.1	93	80	8	224	27	20	11	41	1.86
10291626--10291680	20	3.0	18	75	12	58	38	20	9	32	1.84
10295908--10296078	79	2.2	79	86	0	234	30	21	9	38	1.85
10302769--10303094	78	4.2	79	86	2	444	28	23	11	36	1.90
10302802--10303094	157	1.9	157	88	1	444	27	24	11	35	1.91
10309801--10310128	79	4.2	79	88	0	451	30	20	10	38	1.86
10310753--10310808	20	2.7	21	86	10	80	30	17	17	33	1.94
10313898--10313939	22	1.9	22	85	0	57	23	26	11	38	1.90
10313916--10314477	81	6.9	81	85	0	737	29	22	12	36	1.90
10314880--10315074	95	2.1	95	83	3	241	25	21	13	40	1.90
10322027--10322605	81	7.2	81	85	2	736	27	22	12	37	1.90
10325888--10325943	20	2.6	23	78	13	66	25	12	17	44	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10328461--10328506	23	2.0	23	95	0	83	28	8	28	34	1.87
10330075--10330107	17	1.9	17	100	0	66	42	6	6	45	1.53
10332746--10333203	45	10.2	45	86	1	607	43	14	20	21	1.88
10338763--10339129	45	8.2	45	84	2	400	43	13	18	23	1.86
10338844--10338921	24	3.4	24	67	16	56	44	14	20	20	1.85
10343436--10343498	27	2.3	27	91	5	101	36	44	11	7	1.69
10345583--10345620	17	2.2	17	95	0	67	18	44	26	10	1.82
10345561--10345626	22	2.9	22	88	4	87	18	42	24	15	1.88
10352808--10352867	9	6.3	9	79	11	66	15	26	30	28	1.96
10352807--10352865	19	3.1	19	87	2	82	16	23	30	28	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51