genome.fa.s9592.2.7.7.80.10.50.1000.31.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009592.1 Hibiscus syriacus cultivar Beakdansim tig00116971_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  7920512

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   

This is table  31  of  39  ( 4673 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6133805--6134013	65	3.2	64	82	8	203	30	26	16	26	1.97
6133854--6134016	65	2.5	65	84	3	213	30	26	15	26	1.96
6141425--6141899	200	2.4	199	79	5	507	33	20	13	32	1.92
6142577--6142612	18	1.9	18	88	5	54	33	0	5	61	1.19
6142578--6142675	35	2.8	34	79	10	99	37	0	2	60	1.09
6142584--6142647	18	3.6	17	70	8	56	35	0	3	60	1.12
6142579--6142676	34	2.8	34	80	8	99	38	0	2	59	1.09
6142816--6142869	17	3.2	17	72	0	54	31	0	3	64	1.11
6144406--6144447	21	2.0	21	85	0	57	26	38	11	23	1.90
6144451--6144523	21	3.5	21	88	7	112	17	34	27	20	1.95
6145046--6145142	33	2.9	34	85	3	133	55	4	3	37	1.35
6145044--6145149	34	3.2	33	82	8	133	54	4	2	37	1.36
6145129--6145232	42	2.5	42	92	4	165	42	11	5	40	1.65
6145585--6146213	128	4.9	128	96	0	1125	31	19	25	22	1.98
6159432--6159458	4	6.8	4	100	0	54	74	0	0	25	0.83
6165718--6165790	10	7.7	9	77	10	74	16	27	30	26	1.97
6165717--6165790	19	3.9	18	81	15	87	17	27	29	25	1.97
6165707--6165790	29	2.9	29	84	10	109	16	27	28	27	1.97
6165784--6165860	22	3.5	22	87	3	84	18	45	23	12	1.84
6173036--6173094	20	3.0	20	85	5	75	20	27	22	30	1.98
6176883--6176925	16	2.8	16	92	3	70	41	11	18	27	1.85
6177058--6177127	22	3.2	22	95	0	122	24	24	22	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6177569--6177610	15	3.0	14	90	10	68	33	0	0	66	0.92
6177576--6177604	8	3.8	8	90	9	51	34	0	0	65	0.93
6177569--6177608	14	2.8	15	92	7	66	30	0	0	70	0.88
6184511--6184562	26	2.0	26	100	0	104	19	23	42	15	1.89
6185947--6186050	7	14.9	7	70	11	52	23	0	31	45	1.53
6185936--6186008	35	2.1	35	85	10	96	28	0	27	43	1.55
6185944--6186052	21	5.2	21	74	14	91	24	0	31	44	1.54
6185944--6186036	42	2.2	42	83	7	109	25	0	30	44	1.55
6187732--6187818	26	3.3	26	90	1	129	0	19	27	52	1.46
6188188--6188220	17	1.9	17	93	0	57	24	18	21	36	1.95
6188208--6188272	11	5.6	11	72	22	53	26	26	23	24	2.00
6188208--6188273	24	2.8	23	88	2	87	25	27	22	24	2.00
6191232--6191257	3	8.7	3	100	0	52	69	0	0	30	0.89
6194426--6194464	18	2.2	18	86	9	53	74	7	2	15	1.15
6194497--6194534	10	4.1	10	83	16	55	42	0	0	57	0.98
6195054--6195300	123	2.0	123	100	0	494	26	23	17	32	1.97
6200738--6200836	29	3.3	29	69	20	78	45	2	20	32	1.62
6200733--6200848	60	1.9	60	86	6	164	44	3	18	33	1.66
6202301--6202341	2	20.0	2	90	5	64	46	2	0	51	1.14
6205863--6205893	14	2.2	14	94	0	53	87	3	9	0	0.66
6206908--6206945	2	19.0	2	100	0	76	50	0	0	50	1.00
6206950--6207012	20	3.0	21	73	21	60	49	6	1	42	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6211375--6211432	20	2.9	20	94	0	98	31	34	13	20	1.92
6211460--6211511	19	2.7	19	100	0	104	30	30	17	21	1.96
6211395--6211601	64	3.2	60	75	17	170	31	26	16	25	1.97
6216016--6216077	23	2.7	23	89	0	88	29	24	24	22	1.99
6219627--6219705	23	3.5	22	71	15	72	24	22	25	27	2.00
6221948--6222007	24	2.5	24	100	0	120	38	0	41	20	1.52
6222339--6222376	20	1.9	20	94	0	67	31	34	15	18	1.92
6222396--6222485	45	2.0	45	89	8	139	26	27	21	24	1.99
6229646--6229773	31	4.3	28	76	11	130	53	1	5	39	1.33
6229646--6229773	60	2.1	60	83	8	154	53	1	5	39	1.33
6229900--6229932	17	2.0	17	88	5	50	60	6	3	30	1.36
6231904--6231931	2	14.0	2	100	0	56	50	0	0	50	1.00
6240626--6240660	18	1.9	18	94	0	61	34	14	37	14	1.86
6256734--6256859	60	2.1	60	80	5	148	41	3	19	36	1.67
6259020--6259050	6	5.2	6	100	0	62	32	35	16	16	1.91
6262595--6262642	2	24.0	2	100	0	96	50	0	0	50	1.00
6264608--6264662	18	2.8	21	78	18	64	41	5	0	52	1.24
6265176--6265638	38	12.8	36	74	14	250	43	3	7	45	1.50
6265273--6265589	168	1.9	172	85	5	448	42	2	7	47	1.46
6265399--6265476	27	2.9	27	96	0	138	41	2	8	47	1.49
6265248--6265646	208	1.9	206	82	8	497	43	3	7	46	1.47
6265441--6265633	81	2.5	75	82	10	228	44	3	6	45	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6265599--6265646	25	1.9	25	87	8	71	35	2	6	56	1.36
6265644--6265684	3	13.3	3	89	5	64	29	0	2	68	1.03
6274043--6274224	90	2.0	90	95	0	328	34	17	19	28	1.95
6274743--6274772	11	2.7	11	100	0	60	46	6	0	46	1.29
6275703--6275741	2	19.5	2	100	0	78	51	0	0	48	1.00
6283543--6283767	6	37.5	6	99	0	342	33	50	11	5	1.61
6284563--6284901	20	16.6	20	79	6	171	18	23	20	38	1.94
6284565--6284776	40	5.2	40	84	5	244	20	25	17	36	1.94
6284565--6284776	83	2.6	83	87	2	286	20	25	17	36	1.94
6284766--6284818	21	2.5	21	100	0	106	16	24	33	24	1.96
6284851--6284901	19	2.6	20	90	3	77	15	17	23	43	1.88
6288900--6288938	19	2.0	20	85	10	53	38	17	2	41	1.64
6291073--6291113	21	2.1	19	86	13	57	19	0	2	78	0.87
6292164--6292207	18	2.4	18	96	0	79	54	22	2	20	1.56
6295569--6295616	7	6.9	7	76	9	53	45	35	0	18	1.50
6295571--6295646	28	2.7	28	93	0	125	44	31	1	22	1.61
6295569--6295686	35	3.6	34	78	12	122	44	30	0	23	1.59
6295662--6295688	14	1.9	14	100	0	54	44	33	0	22	1.53
6295599--6295686	35	2.5	35	88	0	140	45	28	1	25	1.61
6296729--6296777	20	2.5	20	82	0	62	38	26	14	20	1.91
6299008--6299041	18	1.9	17	88	5	50	58	5	0	35	1.22
6305420--6305451	5	6.4	5	100	0	64	37	0	21	40	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6321953--6322089	35	3.9	35	74	14	104	40	2	5	52	1.36
6321953--6322099	36	4.1	34	76	14	122	39	2	6	51	1.40
6321956--6322090	71	1.9	70	88	8	202	40	2	5	52	1.36
6323659--6323695	2	18.5	2	100	0	74	51	0	0	48	1.00
6327332--6327382	25	2.0	25	100	0	102	33	15	11	39	1.84
6338234--6338292	28	2.1	28	100	0	118	27	30	3	38	1.73
6341882--6341914	15	2.2	15	89	10	50	39	3	0	57	1.14
6344256--6344317	31	2.0	31	100	0	124	32	0	16	51	1.44
6345126--6345175	24	2.2	22	89	10	75	40	0	0	60	0.97
6345137--6345183	24	2.0	24	86	0	67	51	0	0	48	1.00
6348105--6348153	22	2.2	22	85	7	64	55	22	0	22	1.44
6350330--6350366	2	19.0	2	94	5	67	51	0	0	48	1.00
6351510--6351547	19	2.0	19	100	0	76	26	10	36	26	1.89
6352133--6352201	30	2.2	30	85	15	95	34	5	17	42	1.73
6352142--6352201	30	2.0	30	93	6	104	33	6	16	43	1.74
6352404--6352445	21	2.0	21	90	0	66	30	19	23	26	1.98
6352472--6352512	20	2.0	22	85	9	59	41	34	9	14	1.79
6353633--6353680	19	2.5	20	82	3	62	52	6	12	29	1.63
6353841--6353898	25	2.3	26	94	5	102	39	13	18	27	1.89
6354825--6354864	21	1.9	21	89	0	62	30	10	10	50	1.69
6354976--6355034	30	2.0	30	93	6	102	35	3	16	44	1.65
6355235--6355276	21	2.0	21	90	0	66	30	23	23	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6356981--6357013	16	2.0	17	88	5	50	39	9	18	33	1.82
6360106--6360153	26	1.9	25	87	8	71	47	0	6	45	1.27
6360217--6360267	16	3.1	16	82	2	66	29	3	21	45	1.70
6361619--6361753	28	4.8	28	95	0	216	38	25	8	27	1.84
6362341--6362783	225	2.0	225	93	3	768	45	7	7	39	1.62
6362849--6362894	20	2.3	19	89	10	74	54	10	17	17	1.70
6363015--6363061	20	2.4	19	89	10	76	55	10	17	17	1.69
6363019--6363066	20	2.6	18	84	15	62	56	10	14	18	1.66
6365275--6365338	21	3.1	21	77	8	60	39	15	29	15	1.89
6365372--6365437	33	2.0	33	90	0	105	28	0	48	22	1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39