genome.fa.s9592.2.7.7.80.10.50.1000.23.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009592.1 Hibiscus syriacus cultivar Beakdansim tig00116971_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  7920512

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   

This is table  23  of  39  ( 4673 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4482802--4482903	23	4.3	24	77	15	106	26	11	31	30	1.92
4484400--4484455	11	4.9	11	77	12	51	69	8	19	1	1.24
4488619--4488643	10	2.5	10	100	0	50	32	20	12	36	1.89
4489569--4489624	11	4.9	11	77	12	51	69	8	19	1	1.24
4497359--4497422	32	2.0	32	90	0	101	34	31	20	14	1.92
4502343--4502385	20	2.2	20	87	8	61	46	0	0	53	1.00
4502287--4502400	50	2.3	48	74	18	108	48	3	0	48	1.18
4502693--4502739	22	2.1	23	88	4	69	53	0	2	44	1.12
4502701--4502744	22	2.0	22	82	8	54	54	0	2	43	1.12
4507374--4507427	24	2.2	24	80	6	65	33	27	20	18	1.96
4507394--4507507	24	4.7	24	80	7	115	33	22	20	23	1.97
4507424--4507520	24	4.1	24	84	4	108	31	23	18	25	1.97
4507601--4507766	58	2.9	59	83	7	182	36	18	5	40	1.73
4507600--4507820	57	3.9	56	80	7	210	36	16	5	41	1.72
4508211--4508250	20	2.0	20	95	0	71	30	32	10	27	1.89
4508220--4508263	20	2.2	20	87	0	61	29	31	9	29	1.88
4514710--4514762	13	4.2	13	76	9	56	22	3	3	69	1.20
4518084--4518111	2	14.0	2	100	0	56	50	0	0	50	1.00
4522019--4522046	7	4.0	7	100	0	56	85	0	0	14	0.59
4524606--4524692	23	3.8	23	75	6	86	33	25	24	17	1.96
4528258--4528300	10	4.3	10	87	0	68	30	39	0	30	1.57
4528264--4528303	20	2.0	20	100	0	80	25	40	0	35	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4530392--4530426	12	2.9	12	91	0	52	34	22	34	8	1.85
4532735--4532802	33	2.1	33	100	0	136	25	22	20	32	1.98
4533761--4533907	73	2.0	74	98	1	287	29	24	12	33	1.92
4534992--4535021	9	3.3	9	90	0	51	0	43	0	56	0.99
4535606--4535679	20	3.6	19	74	13	58	29	21	24	24	1.99
4536432--4536534	30	3.4	30	93	0	170	24	19	23	33	1.97
4541848--4541891	21	2.1	21	82	0	52	29	27	18	25	1.98
4542449--4542529	40	2.0	40	100	0	162	30	22	17	29	1.96
4546444--4546497	22	2.5	20	75	16	54	12	18	1	66	1.33
4550030--4550082	25	2.1	25	82	6	63	20	7	0	71	1.10
4551556--4551748	95	2.0	95	96	0	359	40	3	26	29	1.71
4552901--4553041	64	2.2	64	81	5	151	33	21	21	24	1.97
4553036--4553078	15	2.9	15	89	3	61	32	18	23	25	1.97
4553800--4553864	31	2.1	31	85	0	85	24	18	23	33	1.96
4553850--4553922	30	2.4	30	93	0	119	24	19	24	31	1.98
4556103--4556261	31	5.2	31	80	8	166	47	7	0	44	1.36
4556096--4556243	61	2.4	61	76	17	151	48	8	1	41	1.41
4556150--4556236	21	4.2	21	70	18	67	49	6	0	43	1.29
4556183--4556235	11	5.0	10	75	11	52	47	5	0	47	1.26
4559460--4559506	22	2.2	21	81	11	51	68	4	4	23	1.26
4559589--4559753	58	2.8	59	86	3	215	29	24	5	40	1.78
4560663--4560697	18	1.9	18	100	0	70	17	51	20	11	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4560649--4560685	13	2.8	13	91	0	65	16	48	21	13	1.80
4565765--4565863	8	12.5	8	66	23	50	15	40	24	20	1.90
4565760--4565853	13	7.3	13	78	18	74	15	42	23	18	1.88
4565756--4565819	18	3.6	18	93	0	110	17	48	21	12	1.80
4565760--4565853	31	3.1	30	72	23	90	15	42	23	18	1.88
4565800--4565852	13	3.9	13	90	7	79	15	37	24	22	1.92
4577194--4577288	23	4.3	22	80	5	102	23	34	22	20	1.96
4578823--4578863	18	2.3	18	95	0	73	46	24	29	0	1.53
4581569--4581606	3	12.3	3	88	5	58	63	0	0	36	0.95
4581924--4582180	93	2.8	93	87	6	362	24	19	30	24	1.98
4583041--4583069	14	2.1	14	100	0	58	34	27	6	31	1.83
4585917--4586058	31	4.6	31	93	1	223	20	19	21	39	1.93
4586686--4586731	24	2.0	23	91	8	76	19	28	17	34	1.94
4591828--4591861	10	3.2	10	84	15	50	8	14	0	76	1.01
4593446--4593470	8	3.1	8	100	0	50	36	24	24	16	1.94
4597526--4597577	26	2.0	27	88	3	79	63	13	1	21	1.39
4598237--4598294	30	2.0	28	83	6	71	55	15	8	20	1.67
4598540--4598590	22	2.4	20	78	12	57	47	9	0	43	1.36
4608435--4608488	23	2.3	23	87	0	81	29	25	25	18	1.98
4609130--4609251	63	1.9	63	83	6	158	23	18	21	36	1.95
4615392--4615453	23	2.7	23	84	0	88	25	27	25	20	1.99
4616106--4616267	63	2.5	65	82	4	179	25	19	20	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4620342--4620414	14	5.2	14	100	0	146	34	13	0	52	1.41
4625217--4625248	16	2.0	16	100	0	64	12	43	37	6	1.68
4625786--4625843	24	2.5	23	78	10	64	31	0	5	63	1.16
4625828--4625887	27	2.3	27	82	5	79	35	1	3	60	1.23
4627395--4627499	42	2.5	42	79	0	102	20	36	19	23	1.95
4627472--4627523	21	2.5	21	84	12	79	17	34	26	21	1.95
4628034--4628140	34	3.1	34	89	0	160	55	3	3	37	1.36
4628559--4628938	127	3.0	125	91	1	598	33	20	23	22	1.97
4631779--4631834	20	2.8	20	97	0	103	17	16	35	30	1.92
4631671--4631815	65	2.2	63	83	11	170	25	17	24	32	1.97
4632308--4632362	2	27.5	2	100	0	110	50	0	0	49	1.00
4638554--4639036	246	2.0	239	95	4	864	21	24	16	36	1.94
4640360--4640408	19	2.7	17	84	9	53	26	20	28	24	1.99
4640356--4640518	64	2.5	63	76	14	172	27	19	22	30	1.98
4642599--4642666	31	2.2	31	89	0	100	30	13	13	42	1.82
4643492--4643544	21	2.5	21	81	6	72	20	26	18	33	1.96
4643534--4643648	21	5.5	21	89	1	160	40	15	21	22	1.91
4643638--4643681	18	2.4	18	88	0	61	25	31	18	25	1.97
4644115--4644153	14	2.8	14	100	0	78	48	28	15	7	1.72
4644161--4644199	20	2.0	20	89	0	60	20	20	23	35	1.96
4644166--4644224	20	3.0	20	84	0	64	16	18	20	44	1.87
4645528--4645575	18	2.7	18	90	0	78	27	43	12	16	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4646107--4646152	20	2.3	20	84	0	56	36	23	21	17	1.94
4646126--4646242	19	6.6	19	70	19	83	43	19	21	15	1.87
4646162--4646220	14	3.9	14	76	20	64	49	23	16	10	1.77
4646146--4646237	33	2.8	33	94	0	157	47	19	18	14	1.82
4646249--4646314	19	3.7	19	75	19	79	12	19	21	46	1.82
4646299--4646373	20	3.8	20	89	1	107	17	25	24	33	1.96
4646347--4646399	20	2.7	20	87	0	70	24	13	28	33	1.93
4646308--4646393	40	2.2	40	82	4	102	18	20	26	33	1.96
4646741--4646796	21	2.7	20	72	8	58	25	39	14	21	1.91
4646738--4646830	43	2.2	42	86	1	132	21	41	16	20	1.90
4647222--4647255	16	2.1	16	100	0	68	52	0	5	41	1.25
4648255--4648293	14	2.8	14	84	0	51	35	0	17	46	1.49
4648774--4648870	20	4.8	20	97	0	167	26	20	28	23	1.99
4648783--4648911	20	6.4	20	86	5	161	24	19	27	27	1.99
4648901--4648952	20	2.5	21	87	3	70	21	23	17	38	1.93
4648966--4649055	20	4.5	20	92	0	135	26	28	18	25	1.98
4649791--4649837	24	2.0	24	91	0	76	29	19	17	34	1.94
4650025--4650059	12	2.9	12	95	0	61	77	0	14	8	0.99
4652368--4652413	19	2.3	20	85	3	58	41	19	19	19	1.91
4652406--4652437	14	2.3	14	100	0	64	43	21	25	9	1.82
4652420--4652495	33	2.3	33	90	0	116	46	18	23	11	1.82
4652505--4652584	33	2.4	33	91	0	124	11	21	21	46	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4652524--4652584	19	3.5	19	68	21	60	13	22	19	44	1.85
4652691--4652727	14	2.6	14	91	0	65	45	24	0	29	1.53
4654077--4654143	21	3.2	21	68	4	55	19	20	35	23	1.95
4654417--4654601	91	2.0	90	87	6	264	48	17	11	22	1.80
4656293--4656447	19	8.8	19	68	22	106	45	20	22	11	1.83
4656342--4656430	14	5.6	14	70	23	61	42	23	23	10	1.84
4656293--4656447	33	4.5	33	90	5	202	45	20	22	11	1.83
4656448--4656524	19	3.9	19	75	11	57	15	18	22	44	1.87
4657045--4657156	20	5.6	20	81	4	127	21	19	20	38	1.94
4657037--4657292	41	6.3	41	70	11	132	28	17	19	33	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39