genome.fa.s9592.2.7.7.80.10.50.1000.35.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009592.1 Hibiscus syriacus cultivar Beakdansim tig00116971_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  7920512

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   

This is table  35  of  39  ( 4673 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6867124--6867902	155	5.0	154	83	4	877	40	9	11	38	1.74
6868399--6868704	156	2.0	155	86	5	429	42	11	9	36	1.74
6868871--6868943	27	2.7	27	91	2	112	63	21	6	8	1.46
6868881--6868943	13	4.8	12	72	16	54	63	23	6	6	1.41
6868911--6868952	22	2.0	21	85	4	57	66	26	4	2	1.23
6869202--6869242	14	2.8	14	85	7	55	58	14	9	17	1.62
6869432--6869707	135	2.0	136	85	3	369	38	8	12	40	1.73
6869568--6869943	154	2.5	153	82	4	465	38	7	12	41	1.71
6873891--6873985	30	3.2	29	91	5	145	29	33	3	33	1.73
6876955--6877192	125	1.9	124	86	2	334	40	10	12	36	1.78
6877892--6878360	155	3.0	156	81	8	486	41	8	11	38	1.72
6878689--6879013	157	2.1	155	83	4	424	40	9	10	40	1.72
6879268--6879315	23	2.1	23	81	14	55	39	2	4	54	1.32
6883281--6883586	6	52.0	6	95	3	525	34	0	15	50	1.44
6885709--6886469	380	2.0	380	99	0	1504	34	9	20	36	1.84
6886778--6886822	21	2.1	21	83	0	54	33	28	22	15	1.95
6887911--6888215	149	2.1	148	89	1	468	26	16	21	35	1.94
6888192--6888236	23	2.0	23	86	0	63	20	26	28	24	1.99
6920279--6920333	3	19.0	3	83	10	53	30	0	1	67	1.01
6928003--6928043	22	1.9	21	85	5	55	31	12	7	48	1.68
6929611--6929646	15	2.4	15	95	0	63	0	13	13	72	1.13
6929965--6929998	12	2.8	12	90	0	50	11	14	44	29	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6936409--6936630	57	3.9	58	74	14	205	31	10	17	40	1.84
6936818--6936966	59	2.5	59	89	3	219	28	28	12	30	1.93
6936977--6937082	42	2.5	42	81	4	135	27	20	21	30	1.98
6937829--6937863	11	3.2	11	83	0	52	0	5	5	88	0.63
6937830--6937864	17	2.0	18	88	5	54	0	5	8	85	0.73
6939717--6939790	11	7.5	11	75	25	85	25	21	25	27	2.00
6939709--6939797	19	4.7	19	100	0	178	25	21	25	26	1.99
6940534--6940854	103	3.1	103	96	0	588	26	12	23	37	1.90
6940871--6940933	23	2.7	23	82	0	72	20	26	25	26	1.99
6945805--6945840	11	3.5	11	78	21	51	27	22	22	27	1.99
6945804--6945847	19	2.3	19	96	0	79	29	20	22	27	1.99
6946581--6946901	103	3.1	103	97	0	597	25	12	23	37	1.91
6946918--6946980	23	2.7	23	80	0	72	20	26	23	28	1.99
6948580--6948886	59	5.2	59	78	6	307	37	11	22	29	1.88
6948581--6949077	118	4.2	118	74	11	399	36	10	22	29	1.88
6948832--6949006	60	2.9	60	86	2	235	34	13	22	29	1.92
6949159--6949231	36	2.0	36	91	0	119	49	5	15	30	1.67
6949204--6949480	44	6.2	44	91	1	437	39	6	22	32	1.78
6949167--6949480	44	7.3	40	86	5	231	40	6	21	32	1.77
6953267--6953316	2	25.0	2	100	0	100	50	0	0	50	1.00
6955007--6955092	42	2.0	43	86	6	122	51	18	3	26	1.62
6955743--6955811	34	2.0	34	82	0	84	39	14	17	28	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6955805--6955838	17	1.9	18	88	5	52	73	0	2	23	0.97
6957058--6957121	24	2.7	23	83	9	67	73	4	3	18	1.14
6957634--6957683	26	2.0	26	88	4	75	20	10	0	70	1.16
6960699--6960861	60	2.7	60	75	9	136	35	19	4	39	1.73
6963308--6963351	22	1.9	24	86	9	65	36	13	0	50	1.42
6973568--6973622	23	2.4	23	77	17	69	36	12	12	38	1.82
6975658--6975695	20	1.9	20	88	0	58	15	31	26	26	1.96
6978043--6978097	24	2.3	25	75	9	60	20	12	16	50	1.77
6978205--6978314	55	2.0	56	94	0	179	11	20	33	34	1.89
6985792--6985844	2	26.5	2	96	0	97	49	49	0	1	1.12
6992146--6992172	3	9.0	3	100	0	54	33	33	33	0	1.58
6993054--6993121	26	2.7	24	76	15	66	48	1	0	50	1.10
6993072--6993125	23	2.2	26	87	12	80	53	0	0	46	1.00
6993054--6993125	25	2.9	24	82	14	83	48	1	0	50	1.09
6993926--6994258	111	3.0	111	93	0	585	35	7	10	46	1.67
6995761--6995797	18	2.1	18	100	0	74	27	24	21	27	1.99
7000481--7000514	2	17.0	2	100	0	68	50	0	0	50	1.00
7000524--7000598	23	3.3	23	78	12	66	32	0	2	65	1.07
7003586--7003643	25	2.4	24	83	11	73	51	6	3	37	1.46
7003598--7003660	19	3.2	19	78	12	81	53	7	1	36	1.40
7007064--7007094	16	1.9	16	93	0	53	54	0	35	9	1.33
7007083--7007135	15	3.6	14	75	14	54	69	0	22	7	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7007099--7007132	17	2.0	17	88	0	50	70	0	20	8	1.13
7012387--7012534	31	4.8	32	77	9	146	32	27	26	13	1.94
7012396--7012549	62	2.5	62	84	2	193	31	27	26	14	1.95
7015096--7015158	18	3.3	18	74	23	65	26	30	22	20	1.98
7015805--7015836	14	2.2	15	94	5	57	34	6	0	59	1.23
7016629--7016785	64	2.5	62	79	10	147	29	17	19	33	1.95
7018169--7018298	30	4.3	30	96	0	215	32	17	25	24	1.97
7021165--7021240	31	2.5	31	86	0	98	40	18	17	23	1.91
7025523--7027986	4	620.8	4	94	1	3949	25	2	24	47	1.66
7029770--7029855	43	2.0	43	100	0	172	32	4	13	48	1.63
7030819--7030843	12	2.1	12	100	0	50	44	0	0	56	0.99
7031716--7032307	298	2.0	299	87	4	872	26	15	17	41	1.88
7036546--7036585	20	2.0	20	95	0	71	55	22	15	7	1.65
7036545--7036584	10	4.0	10	90	0	62	57	22	12	7	1.60
7036885--7036927	14	3.1	14	93	0	68	53	20	13	11	1.71
7036896--7036950	26	2.2	24	77	6	56	49	20	16	14	1.80
7037522--7037565	12	3.8	12	90	3	63	11	9	47	31	1.71
7037520--7037565	24	2.0	24	91	4	76	10	10	47	30	1.73
7043792--7044072	58	4.8	58	76	7	246	30	23	9	35	1.87
7043811--7044080	117	2.3	117	93	1	452	31	23	10	35	1.88
7045280--7045410	64	2.0	64	98	0	253	30	16	23	29	1.96
7047215--7047336	60	2.0	61	95	1	219	33	18	13	34	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7048418--7048771	43	8.2	43	80	3	345	26	19	5	48	1.69
7048565--7048629	21	3.0	21	68	18	62	26	20	1	52	1.55
7048434--7048771	129	2.6	129	91	1	543	26	20	4	48	1.69
7048753--7049059	153	2.0	153	98	0	596	33	12	8	45	1.72
7049072--7049181	51	2.2	51	96	3	204	40	17	1	40	1.60
7049160--7049196	2	18.5	2	100	0	74	51	0	0	48	1.00
7049665--7049703	2	20.0	2	94	5	71	48	0	0	51	1.00
7053352--7053390	18	2.2	18	95	4	71	38	5	0	56	1.22
7054201--7054259	29	2.0	29	93	0	100	37	16	18	27	1.93
7055829--7056282	227	2.0	227	96	0	847	35	13	20	30	1.91
7060638--7060693	21	2.6	22	80	5	69	21	25	19	33	1.97
7060682--7060724	20	2.2	20	100	0	86	39	16	18	25	1.91
7060686--7060733	20	2.4	20	92	0	78	41	14	18	25	1.88
7060730--7060769	20	2.0	20	100	0	80	20	30	25	25	1.99
7061590--7061643	24	2.2	24	93	0	90	20	18	20	40	1.91
7063889--7063922	6	5.7	6	92	0	59	61	17	2	17	1.46
7063887--7063929	18	2.4	18	88	0	68	55	20	4	18	1.60
7063989--7064258	140	1.9	140	94	0	477	30	14	14	41	1.84
7064229--7064482	20	13.6	20	70	17	163	33	21	18	26	1.96
7064229--7064433	94	2.2	94	84	6	256	33	21	17	27	1.96
7064331--7064467	54	2.5	53	90	3	211	34	21	20	24	1.97
7064472--7064529	20	2.9	20	81	0	71	10	17	27	44	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7064628--7064689	14	4.3	14	77	6	61	46	14	0	38	1.45
7066112--7066204	42	2.2	42	80	3	107	22	17	39	20	1.92
7066690--7066755	20	3.4	20	83	4	82	37	25	16	19	1.93
7066800--7066886	20	4.3	20	97	0	165	16	19	25	39	1.92
7066780--7066878	40	2.6	37	85	11	123	15	19	22	43	1.87
7068800--7068867	20	3.5	20	85	2	93	50	23	14	11	1.76
7069469--7069561	20	4.7	20	90	0	150	24	22	27	24	2.00
7069494--7069603	40	2.8	38	83	10	116	25	20	28	25	1.99
7069470--7069601	60	2.2	60	80	8	144	25	21	28	25	1.99
7070197--7070281	35	2.3	38	78	15	90	49	1	1	48	1.16

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39