genome.fa.s9592.2.7.7.80.10.50.1000.36.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009592.1 Hibiscus syriacus cultivar Beakdansim tig00116971_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  7920512

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   

This is table  36  of  39  ( 4673 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7073849--7073935	23	3.8	23	76	0	84	37	9	13	39	1.77
7073844--7073933	46	2.0	46	86	0	126	37	10	14	37	1.80
7080020--7080144	56	2.2	58	94	2	218	40	25	5	28	1.78
7089502--7089559	21	2.8	20	71	19	57	34	22	31	12	1.91
7089791--7089844	24	2.2	24	96	0	99	40	14	14	29	1.86
7091778--7091811	2	17.0	2	100	0	68	50	0	0	50	1.00
7093229--7093274	24	2.0	23	87	12	67	54	0	0	45	0.99
7106891--7106924	9	3.6	10	88	11	54	20	38	20	20	1.94
7116414--7116456	22	2.0	20	86	8	59	25	32	0	41	1.56
7117033--7117127	43	2.2	43	98	0	181	36	17	5	40	1.73
7117032--7117108	24	3.4	24	65	17	74	38	16	5	38	1.71
7117190--7117300	58	1.9	59	81	9	138	33	15	5	45	1.69
7118543--7118687	60	2.4	60	79	8	152	32	20	3	44	1.68
7125149--7125187	20	2.0	20	89	0	60	33	23	10	33	1.88
7127084--7127118	18	1.9	18	88	0	52	5	20	31	42	1.75
7132556--7132595	21	1.9	21	85	10	55	35	10	2	52	1.48
7134173--7134264	42	2.2	42	100	0	184	32	17	25	25	1.97
7135427--7135585	52	3.1	52	95	0	291	32	7	15	44	1.75
7138741--7138831	21	4.3	21	72	8	60	40	15	38	5	1.70
7138794--7138849	21	2.7	21	82	0	67	44	14	37	3	1.62
7139333--7139414	43	1.9	43	82	0	101	36	20	19	23	1.95
7139376--7139509	43	3.1	43	83	1	171	28	24	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7140417--7140497	42	1.9	42	94	0	144	38	13	19	28	1.90
7141660--7141818	52	3.1	52	98	0	309	32	7	16	43	1.76
7144984--7145039	21	2.7	21	82	0	76	39	16	39	5	1.71
7145512--7145752	43	5.7	43	79	6	170	31	21	19	26	1.98
7145524--7145747	86	2.6	84	78	3	223	31	21	19	27	1.97
7147038--7147082	10	4.2	10	83	11	54	0	15	0	84	0.62
7152546--7152608	33	1.9	33	83	6	83	25	11	17	46	1.81
7159882--7159920	20	2.0	20	89	0	60	33	23	10	33	1.88
7166336--7166373	11	3.5	11	96	3	69	44	0	7	47	1.32
7166790--7166823	16	2.0	18	88	11	54	58	0	0	41	0.98
7169041--7169100	2	30.0	2	100	0	120	50	0	0	50	1.00
7174779--7174819	21	2.0	21	85	0	55	48	2	0	48	1.14
7174785--7174836	24	2.2	24	83	13	63	44	3	0	51	1.19
7175708--7175741	15	2.3	15	89	0	50	73	0	0	26	0.83
7177333--7177445	39	2.9	39	93	2	194	28	8	15	46	1.76
7177334--7177499	34	4.6	35	80	9	167	28	10	16	44	1.80
7179996--7180037	17	2.5	17	88	3	59	52	0	0	47	1.00
7179984--7180057	39	2.0	35	84	10	94	50	0	1	48	1.09
7180179--7180811	75	8.4	75	97	0	1167	35	21	21	21	1.96
7181488--7181564	22	3.5	22	76	0	82	37	12	12	36	1.83
7181920--7182031	54	2.1	54	87	0	161	22	22	16	39	1.92
7183093--7183400	145	2.1	145	97	0	580	31	22	16	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7184374--7184602	114	2.0	114	91	0	368	30	20	15	33	1.94
7193605--7194055	106	4.2	106	92	2	717	20	17	26	34	1.95
7194088--7194201	43	2.7	43	95	0	210	24	13	30	31	1.93
7198397--7198431	16	2.2	16	94	0	61	57	0	2	40	1.14
7200979--7201052	22	3.4	23	75	14	77	47	0	0	52	1.00
7201072--7201107	12	2.9	12	91	4	54	11	16	52	19	1.73
7204943--7204968	12	2.2	12	100	0	52	53	15	15	15	1.73
7212242--7212293	23	2.3	23	82	0	68	23	26	23	26	2.00
7213994--7214027	17	2.0	17	94	0	59	44	0	8	47	1.34
7219396--7219430	18	1.9	18	94	0	61	25	0	2	71	1.00
7220872--7221119	71	3.6	69	82	6	285	46	6	5	40	1.54
7224464--7224498	4	8.8	4	93	0	61	74	0	2	22	0.95
7226361--7226405	23	1.9	23	81	4	54	20	2	31	46	1.62
7226905--7227686	95	8.2	95	86	0	992	32	17	18	31	1.94
7227667--7227727	20	3.0	21	65	18	56	24	24	9	40	1.85
7227258--7228884	812	2.0	820	96	0	2991	30	17	16	35	1.92
7228084--7228498	95	4.4	95	84	3	493	33	17	17	30	1.93
7229015--7229443	95	4.5	94	86	2	529	33	17	17	31	1.94
7229015--7229443	190	2.3	190	86	1	583	33	17	17	31	1.94
7228073--7230909	945	3.0	944	96	0	5240	32	17	16	33	1.93
7229960--7230389	95	4.5	95	85	1	520	33	17	17	31	1.94
7229966--7230389	189	2.2	189	85	2	555	33	17	17	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7233910--7233955	10	4.5	10	83	5	56	4	13	0	82	0.81
7235322--7235358	13	2.6	15	79	16	51	51	10	24	13	1.73
7235751--7235810	29	2.0	30	90	3	95	56	10	18	15	1.66
7239986--7240062	32	2.4	32	100	0	154	24	37	12	24	1.91
7245810--7245841	15	2.1	15	94	0	55	40	9	0	50	1.35
7250890--7250922	15	2.1	16	94	5	59	0	33	30	36	1.58
7253870--7253931	13	4.6	13	73	13	54	51	3	6	38	1.44
7254563--7254635	34	2.2	33	90	2	110	17	12	21	47	1.80
7254530--7254615	20	4.6	20	65	19	60	20	15	19	44	1.87
7256132--7256287	42	3.8	42	85	4	151	26	38	12	23	1.90
7256383--7256454	21	3.4	21	83	7	92	23	12	29	34	1.92
7256468--7256577	21	5.2	21	71	6	89	21	10	34	33	1.87
7256404--7256564	63	2.6	63	79	5	182	22	11	33	32	1.89
7256470--7256565	42	2.3	43	76	5	115	21	8	35	34	1.84
7256685--7256734	4	12.5	4	91	0	82	26	0	2	72	0.96
7258120--7258318	20	10.2	20	71	9	135	42	21	12	24	1.86
7258139--7258258	40	3.0	40	91	0	177	42	21	12	23	1.87
7258202--7258312	54	2.1	54	89	0	168	45	22	12	19	1.84
7260376--7260500	40	3.1	40	79	4	108	40	11	19	29	1.86
7260380--7260458	20	4.0	20	72	0	68	37	12	18	30	1.89
7261332--7261375	13	3.4	13	96	0	79	40	0	18	40	1.50
7261299--7261544	109	2.2	110	93	3	413	25	4	23	46	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7261757--7261875	38	3.2	37	74	11	109	36	10	17	36	1.84
7261775--7261887	38	3.0	38	75	12	110	39	11	15	32	1.84
7261917--7262505	75	7.8	75	83	2	680	39	10	17	32	1.83
7262029--7262451	39	11.2	38	67	9	229	37	10	19	31	1.86
7261900--7262505	227	2.7	224	81	4	691	39	10	17	32	1.83
7267558--7267588	16	1.9	16	93	0	53	77	0	0	22	0.77
7269292--7269386	33	2.9	33	93	0	163	33	13	24	28	1.93
7269671--7269806	38	3.6	37	78	4	130	38	13	15	33	1.86
7269898--7270161	36	7.1	36	67	12	122	38	10	19	31	1.86
7269824--7270562	75	9.8	75	88	2	1036	37	10	19	31	1.87
7272836--7272870	14	2.5	14	100	0	70	28	31	8	31	1.87
7277679--7277705	13	2.1	13	100	0	54	22	22	25	29	1.99
7278598--7278632	16	2.2	16	94	0	61	42	5	20	31	1.75
7278945--7279033	27	3.2	27	72	20	83	39	1	15	43	1.54
7278907--7279055	57	2.5	58	89	5	210	38	2	14	45	1.56
7279580--7279631	2	28.5	2	74	18	51	46	0	3	50	1.20
7281360--7281444	42	2.0	44	86	6	120	21	25	18	34	1.96
7283363--7283397	16	2.2	16	94	0	61	42	5	20	31	1.75
7283710--7283798	27	3.2	27	72	20	83	39	1	15	43	1.54
7283672--7283820	57	2.5	58	89	5	210	38	2	14	45	1.56
7286121--7286205	42	2.0	44	86	6	120	21	25	18	34	1.96
7288041--7288099	22	2.7	22	94	0	109	23	6	30	38	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7288399--7288445	23	2.1	22	88	4	67	36	2	14	46	1.57
7288399--7288485	35	2.6	33	79	16	106	40	1	11	47	1.47
7288479--7288531	27	2.0	27	88	3	81	41	11	16	30	1.84
7289999--7290045	16	2.9	16	83	3	58	31	0	2	65	1.04
7295647--7295714	23	3.0	23	82	0	91	32	23	22	22	1.98
7300975--7301039	23	2.8	23	83	0	94	29	24	26	20	1.99
7305036--7305091	17	3.4	17	73	14	62	42	0	0	57	0.99
7305041--7305101	15	3.9	15	73	12	59	42	0	0	57	0.98
7305030--7305098	33	2.2	31	84	10	86	39	0	0	60	0.97
7306831--7306913	42	2.0	42	80	4	96	22	33	18	25	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39