genome.fa.s9592.2.7.7.80.10.50.1000.39.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009592.1 Hibiscus syriacus cultivar Beakdansim tig00116971_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  7920512

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   

This is table  39  of  39  ( 4673 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7709561--7709636	35	2.2	35	79	9	84	35	3	1	59	1.24
7719442--7719875	188	2.3	189	80	7	461	37	10	12	40	1.77
7721254--7721288	16	2.2	16	89	0	52	14	5	22	57	1.59
7727475--7727535	21	3.2	21	65	29	64	31	4	21	42	1.74
7727467--7727622	72	2.1	75	89	5	241	32	5	18	44	1.72
7727467--7727622	37	4.3	37	91	5	239	32	5	18	44	1.72
7734294--7734343	23	2.2	23	96	0	91	34	6	24	36	1.80
7739305--7739360	12	4.7	12	84	0	58	21	32	5	41	1.76
7739327--7739360	6	5.7	6	92	0	59	17	32	2	47	1.63
7739309--7739360	18	2.9	18	91	0	68	19	32	5	42	1.75
7739306--7739360	21	2.6	21	79	0	65	20	32	5	41	1.75
7741337--7741389	21	2.5	21	100	0	106	32	16	13	37	1.88
7740824--7743573	201	13.7	201	91	3	4374	31	18	14	35	1.91
7745748--7745785	20	1.9	20	100	0	76	23	23	21	31	1.98
7745793--7745933	64	2.2	63	82	7	169	26	24	17	31	1.97
7747162--7747196	16	2.1	17	89	5	54	20	28	0	51	1.47
7749936--7749993	20	2.7	20	86	10	71	27	22	18	31	1.97
7749981--7750121	64	2.2	63	82	7	169	25	23	18	32	1.97
7752198--7752263	33	2.0	33	90	0	105	22	45	0	31	1.53
7752297--7752361	21	3.1	21	90	0	94	15	30	9	44	1.78
7754592--7754643	20	2.6	20	93	0	86	21	13	13	51	1.74
7764578--7764839	130	2.0	130	89	1	400	43	16	14	25	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7773095--7773130	2	18.0	2	100	0	72	50	0	0	50	1.00
7774166--7774196	16	1.9	16	93	0	53	48	16	12	22	1.80
7775988--7776018	16	1.9	16	93	0	53	22	19	16	41	1.89
7776783--7776859	33	2.3	33	90	0	118	44	23	16	15	1.86
7777662--7777713	20	2.6	19	80	16	61	67	1	1	28	1.12
7777835--7777872	2	19.0	2	100	0	76	50	0	0	50	1.00
7779585--7780331	105	7.1	105	95	0	1316	22	18	25	33	1.96
7781057--7781180	62	2.0	64	85	4	171	12	24	10	52	1.71
7790556--7790589	10	3.4	10	87	0	50	73	0	5	20	1.04
7791899--7791950	20	2.6	19	80	16	61	67	1	1	28	1.12
7792072--7792103	2	16.0	2	93	0	55	50	3	0	46	1.17
7797542--7797610	23	3.0	23	72	21	63	47	0	0	52	1.00
7797579--7797631	27	2.0	27	85	7	72	43	1	0	54	1.11
7800696--7800727	16	2.0	16	93	0	55	28	0	0	71	0.86
7800764--7800821	30	1.9	30	86	6	82	51	12	0	36	1.39
7801424--7801476	21	2.5	20	91	8	88	58	1	5	33	1.32
7804058--7804186	60	2.2	60	82	2	152	31	14	16	37	1.89
7806050--7806099	19	2.5	19	81	12	57	72	2	2	24	1.06
7806052--7806092	10	4.2	10	78	15	50	68	2	2	26	1.15
7806315--7806395	38	2.2	36	85	12	103	64	2	4	28	1.27
7806429--7806502	2	38.5	2	85	8	91	58	0	0	41	0.98
7806986--7807087	34	2.9	36	85	11	156	29	14	12	43	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7807635--7808190	105	5.3	104	88	4	753	22	18	25	33	1.97
7809985--7810039	22	2.5	22	96	0	101	23	10	27	38	1.88
7810636--7810689	22	2.5	20	77	11	54	3	14	7	74	1.18
7810674--7810713	16	2.5	16	84	11	55	0	15	7	77	0.98
7815298--7815347	19	2.5	19	81	12	57	72	2	2	24	1.06
7815300--7815340	10	4.2	10	78	15	50	68	2	2	26	1.15
7815467--7815621	56	2.7	55	79	16	147	68	1	4	25	1.16
7815598--7815657	17	3.2	17	70	20	57	63	1	5	30	1.25
7815575--7815658	39	2.2	36	89	6	123	67	2	3	26	1.19
7815705--7815760	2	29.5	2	87	10	82	51	0	1	46	1.11
7815705--7815779	14	5.1	15	84	9	84	56	0	1	42	1.08
7815705--7815783	16	5.2	15	84	11	90	56	0	1	41	1.07
7816230--7816318	37	2.4	37	83	3	99	30	14	13	41	1.84
7819392--7819427	16	2.2	16	100	0	72	47	11	0	41	1.39
7819770--7819796	2	13.5	2	100	0	54	48	0	0	51	1.00
7821917--7822309	196	2.0	197	99	0	779	34	16	12	36	1.86
7826598--7826632	2	17.5	2	100	0	70	0	48	0	51	1.00
7826635--7826665	2	16.0	2	93	6	55	51	0	0	48	1.00
7827368--7827454	31	2.8	31	78	1	86	57	22	12	6	1.59
7827395--7827466	31	2.3	31	78	7	74	62	19	11	6	1.50
7828239--7828290	21	2.5	21	84	3	70	40	19	23	17	1.91
7828279--7828413	20	6.7	20	81	4	119	33	23	17	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7828258--7828413	61	2.6	61	82	2	188	34	23	18	23	1.96
7828582--7828625	22	2.0	22	90	0	70	22	43	15	18	1.88
7828873--7828931	20	3.0	20	87	0	73	16	18	22	42	1.89
7830233--7830277	18	2.5	18	88	0	72	26	44	15	13	1.83
7830759--7830804	20	2.3	20	84	0	56	36	23	21	17	1.94
7830770--7830825	20	2.8	20	81	2	69	39	21	23	16	1.92
7830798--7830861	19	3.7	18	76	20	73	43	20	21	14	1.87
7830873--7830962	14	5.8	14	74	21	81	11	17	23	47	1.79
7830868--7830979	33	3.4	33	96	1	199	11	18	23	46	1.82
7830889--7830979	14	5.4	18	71	23	90	13	18	21	46	1.83
7830964--7831019	20	2.8	19	84	7	67	16	23	23	37	1.93
7831384--7831471	41	2.1	42	85	2	124	21	43	14	20	1.88
7832881--7832919	14	2.8	14	84	0	51	35	0	17	46	1.49
7833056--7833123	19	3.8	19	81	14	92	48	17	20	13	1.80
7833391--7833482	20	4.6	20	73	2	76	20	18	21	39	1.93
7833467--7833518	20	2.5	21	87	3	70	21	23	17	38	1.93
7833715--7833755	12	3.6	12	80	9	50	17	39	7	36	1.77
7834531--7834555	12	2.1	12	100	0	50	72	0	28	0	0.86
7836838--7836968	19	7.7	19	69	23	112	43	19	22	13	1.87
7836838--7836964	33	3.8	33	91	0	209	43	19	22	14	1.87
7836839--7836971	66	2.0	66	97	0	248	42	19	22	15	1.89
7836979--7837034	14	3.7	15	78	17	62	10	25	23	41	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7836968--7837052	32	2.6	33	90	5	129	14	22	20	43	1.87
7837159--7837195	14	2.6	14	91	0	65	45	24	0	29	1.53
7838491--7838557	21	3.2	21	68	4	55	19	20	35	23	1.95
7838491--7838604	42	2.7	41	81	5	104	21	19	35	22	1.96
7838828--7839012	91	2.0	91	89	6	284	47	17	12	22	1.82
7840006--7840111	53	2.0	53	100	0	212	22	20	13	43	1.86
7840618--7840729	19	6.1	19	77	14	110	43	19	24	12	1.85
7840642--7840707	33	2.0	34	90	3	107	40	22	25	10	1.86
7840725--7840791	19	3.5	19	85	2	89	10	16	25	47	1.78
7841309--7841503	20	9.6	20	68	13	76	28	18	20	32	1.96
7841370--7841442	21	3.5	21	79	3	76	36	17	21	23	1.94
7841370--7841545	41	4.3	41	69	10	117	32	19	21	26	1.97
7841493--7841545	21	2.5	22	78	6	65	33	20	26	18	1.96
7845768--7845817	21	2.4	21	89	0	73	40	12	24	24	1.88
7866060--7866148	40	2.2	40	95	0	160	38	19	19	23	1.93
7868019--7868402	42	9.0	42	79	7	360	28	18	21	31	1.97
7867913--7868354	135	3.3	135	84	5	505	28	18	21	30	1.97
7868191--7868340	20	7.2	20	65	21	76	24	19	23	32	1.97
7868850--7869151	53	5.7	53	80	3	281	30	18	25	24	1.98
7873911--7873958	2	24.0	2	95	0	87	47	2	0	50	1.12
7912680--7912708	15	1.9	15	100	0	58	31	20	6	41	1.79
7913159--7913265	34	3.1	34	87	0	151	36	2	4	56	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7913786--7913900	21	5.5	21	88	8	162	21	27	32	18	1.97
7915675--7915754	34	2.4	33	81	8	92	60	1	0	38	1.05
7916696--7916775	34	2.4	33	81	8	92	60	1	0	38	1.05

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39

The End!