genome.fa.s9592.2.7.7.80.10.50.1000.37.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009592.1 Hibiscus syriacus cultivar Beakdansim tig00116971_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  7920512

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   

This is table  37  of  39  ( 4673 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7306894--7306956	21	3.0	22	86	4	85	20	34	22	22	1.96
7310298--7310355	24	2.5	22	83	10	64	46	0	3	50	1.18
7310267--7310325	26	2.2	28	78	6	68	44	0	1	54	1.10
7310304--7310355	24	2.1	26	86	13	74	46	0	3	50	1.20
7310700--7310729	11	2.8	11	95	5	53	50	0	0	50	1.00
7318933--7318980	21	2.3	21	92	0	78	31	31	18	18	1.95
7318983--7319262	42	6.8	38	82	8	182	22	18	23	35	1.96
7318989--7319121	63	2.1	61	86	2	176	22	19	22	35	1.96
7318997--7319192	61	3.1	62	80	9	213	20	19	25	34	1.96
7318988--7319262	103	2.7	103	90	1	433	22	18	23	35	1.96
7319097--7319234	61	2.2	61	93	2	231	21	18	26	34	1.96
7319675--7319845	85	2.0	85	98	0	333	31	8	12	46	1.73
7319688--7319869	85	2.1	85	87	2	249	32	9	13	43	1.76
7320194--7320307	21	5.4	21	77	15	119	36	23	19	20	1.95
7320190--7320367	42	4.3	42	88	3	243	34	25	18	21	1.96
7320190--7320373	21	8.8	21	71	17	116	34	25	19	21	1.96
7320190--7320392	42	4.9	41	82	7	225	34	24	19	21	1.96
7330194--7330222	14	2.0	15	93	6	51	62	27	3	6	1.37
7332146--7332221	22	3.5	22	74	5	82	26	25	23	25	2.00
7332142--7332240	44	2.3	42	84	6	128	24	21	26	28	1.99
7338758--7339118	131	2.8	131	86	0	499	39	15	11	32	1.84
7341683--7341798	60	1.9	59	83	8	146	31	24	3	40	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7341954--7342084	60	2.2	60	84	2	165	40	7	19	32	1.80
7342578--7342697	60	2.0	60	81	3	143	29	20	5	45	1.74
7342892--7343073	60	3.1	58	75	14	174	36	4	23	35	1.76
7344743--7344995	131	2.0	127	80	10	289	39	4	9	45	1.58
7351430--7351468	2	19.5	2	94	0	69	48	2	0	48	1.15
7355575--7355604	2	15.0	2	100	0	60	50	0	0	50	1.00
7356729--7356788	30	2.0	31	90	3	95	28	16	15	40	1.89
7359059--7359111	26	2.0	26	82	7	63	35	16	18	28	1.93
7360089--7360201	24	4.8	24	83	6	131	28	18	18	34	1.95
7361462--7361494	7	4.6	7	92	7	57	66	0	0	33	0.92
7361462--7361494	15	2.3	14	94	5	57	66	0	0	33	0.92
7362607--7362647	22	1.9	22	85	5	57	60	14	12	12	1.58
7365935--7365992	26	2.3	24	85	8	80	31	6	5	56	1.47
7365936--7365980	14	3.4	14	74	22	51	28	8	4	57	1.48
7367025--7367433	205	2.0	204	99	0	800	40	16	16	26	1.89
7369793--7369898	51	2.1	50	82	10	126	54	13	13	18	1.70
7370925--7370962	18	2.1	18	100	0	76	31	15	10	42	1.81
7371070--7371172	39	2.8	37	80	4	109	39	14	17	28	1.89
7371014--7371187	75	2.3	76	83	5	214	38	13	18	29	1.89
7371014--7371639	36	17.8	36	66	17	140	38	11	18	30	1.87
7371349--7371603	36	7.3	36	71	18	150	39	12	19	29	1.88
7371161--7371466	68	4.5	68	87	2	436	37	12	17	32	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7371515--7371666	36	4.2	36	74	8	128	36	9	18	34	1.84
7372039--7372139	42	2.4	42	82	11	127	30	23	19	25	1.98
7372140--7372958	98	8.4	98	93	0	1284	36	20	11	31	1.88
7372140--7372958	391	2.1	389	92	1	1334	36	20	11	31	1.88
7372140--7372958	293	2.8	293	91	0	1309	36	20	11	31	1.88
7372959--7373037	38	2.1	38	90	0	122	32	18	17	30	1.95
7374339--7374419	14	5.9	14	78	16	55	1	20	4	72	1.10
7374317--7374396	39	2.1	38	86	6	108	2	18	5	73	1.13
7374353--7374423	22	3.0	22	79	8	70	1	18	4	76	1.03
7378081--7378169	29	2.9	29	75	16	81	75	6	1	16	1.08
7378075--7378133	20	2.9	21	73	14	52	72	6	0	20	1.06
7378080--7378174	40	2.4	40	80	13	99	73	6	1	18	1.10
7378083--7378171	32	2.9	29	79	15	90	75	6	1	16	1.08
7379536--7379572	17	2.1	18	90	5	58	2	5	45	45	1.40
7382023--7382091	20	3.4	21	88	9	99	34	28	10	26	1.89
7382061--7382164	20	5.2	20	77	6	95	30	20	13	35	1.91
7382000--7382162	40	4.1	40	78	4	150	31	23	13	31	1.93
7382328--7382365	16	2.5	15	84	12	51	28	5	0	65	1.14
7386339--7386453	21	5.5	21	79	0	131	21	17	37	23	1.94
7386339--7386460	42	2.9	42	85	0	163	22	16	37	23	1.93
7386747--7386908	21	7.7	21	66	5	67	33	33	11	20	1.88
7388437--7388490	20	2.7	19	83	8	72	46	22	16	14	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7388517--7388555	20	2.0	20	100	0	78	15	12	20	51	1.76
7388519--7388562	20	2.2	20	91	0	70	15	13	20	50	1.78
7388949--7388980	2	16.0	2	100	0	64	50	0	0	50	1.00
7393998--7394090	38	2.4	39	96	1	170	60	2	0	37	1.09
7394983--7395035	27	2.0	27	96	0	97	26	15	15	43	1.85
7395025--7395094	29	2.4	29	90	0	104	25	11	20	42	1.85
7397561--7397756	98	2.0	98	100	0	392	26	33	13	26	1.93
7401624--7401686	3	21.0	3	96	0	99	33	4	0	61	1.17
7402372--7402455	26	3.2	26	73	20	68	69	2	9	19	1.28
7402703--7402749	22	2.1	23	84	11	62	61	2	8	27	1.36
7403274--7403393	34	3.4	35	86	4	170	31	9	16	42	1.80
7404152--7404237	34	2.5	34	96	0	154	20	19	24	34	1.96
7405724--7405861	69	2.0	69	85	0	186	23	14	23	38	1.92
7405940--7405987	13	3.8	12	78	13	51	2	14	4	79	0.98
7405943--7405982	13	2.9	13	82	13	53	2	15	2	80	0.93
7405940--7405982	15	3.1	14	83	9	61	2	13	2	81	0.89
7409057--7409199	33	4.0	33	73	21	119	65	1	1	32	1.10
7409055--7409144	29	3.0	28	80	13	90	66	0	1	32	0.99
7409100--7409192	48	1.9	48	82	4	116	65	2	2	30	1.16
7409519--7409663	37	3.9	37	94	0	245	31	13	13	42	1.82
7414177--7414204	14	2.0	14	100	0	56	35	35	0	28	1.58
7420443--7420495	23	2.4	21	72	19	54	73	1	9	15	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7421177--7421248	31	2.3	31	78	4	83	20	20	13	44	1.86
7431596--7431710	40	2.9	40	76	14	114	34	15	0	48	1.51
7440023--7440090	36	1.9	35	93	3	118	41	7	20	30	1.80
7440055--7440100	15	3.1	15	81	6	67	41	8	19	30	1.82
7440444--7440508	23	2.8	23	79	6	60	44	3	1	50	1.26
7440532--7440579	24	2.0	24	83	0	60	58	2	0	39	1.10
7440513--7440591	29	2.7	29	83	13	83	53	2	0	44	1.14
7440607--7440650	22	2.0	23	86	4	63	54	0	0	45	0.99
7440843--7440957	42	2.7	42	90	4	178	47	20	16	15	1.82
7448993--7449134	16	9.1	15	68	19	51	67	2	4	25	1.22
7448993--7449108	25	4.8	23	68	17	67	68	2	3	25	1.19
7448993--7449167	15	10.9	16	66	25	68	68	2	4	25	1.19
7449043--7449109	20	3.6	18	69	16	55	71	0	2	25	1.00
7449046--7449160	19	5.9	19	70	17	58	70	0	4	24	1.11
7450413--7450461	14	3.4	14	78	15	64	61	2	2	34	1.19
7450420--7450469	16	3.3	16	75	16	61	64	4	4	28	1.30
7457543--7457608	24	2.8	24	81	2	71	21	21	21	36	1.95
7459536--7459570	13	2.6	14	90	4	54	60	31	8	0	1.27
7461172--7461223	19	2.7	19	93	0	86	23	17	26	32	1.96
7461108--7461288	83	2.2	83	83	8	217	27	18	25	28	1.98
7461127--7461288	84	1.9	83	85	8	222	27	18	24	29	1.98
7464473--7464549	23	3.5	22	78	5	84	23	23	24	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7473769--7474300	268	2.0	266	98	1	1030	29	16	25	28	1.97
7478127--7478183	12	4.8	12	73	14	55	52	17	14	15	1.75
7478113--7478183	24	2.9	24	79	10	72	50	16	12	19	1.77
7478127--7478204	24	3.2	24	76	7	77	52	19	11	16	1.74
7479213--7479256	17	2.6	18	92	7	74	22	13	20	43	1.87
7479304--7479338	18	1.9	18	88	0	52	28	17	0	54	1.43
7480653--7480693	13	3.2	13	89	0	55	19	21	39	19	1.93
7483422--7483547	64	2.0	64	84	7	166	26	19	24	29	1.98
7489380--7489461	42	2.0	42	87	0	119	29	20	26	23	1.99
7490251--7490299	22	2.2	22	92	7	82	32	12	16	38	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39